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Cow genome map

           
Conread name:
           
rcte07_n20.y1
        

               
Conread position:
               
1-288
               

               
Cow position:
               
chr1:91039342-91039052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr1:99642533-99642238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 141
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr1:4414371-4414101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:90976252-90975926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr1:22827002-22827279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
4-302
               

               
Cow position:
               
chr1:53622796-53623091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr1:94226715-94226394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
6-171
               

               
Cow position:
               
chr1:41004520-41004354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 7
               

               
Conread position:
               
6-228
               

               
Cow position:
               
chr1:1991578-1991355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
94, 6
               

               
Conread position:
               
6-269
               

               
Cow position:
               
chr1:56634934-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chr1:42555101-42555371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
6-272
               

               
Cow position:
               
chr1:81355868-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr1:37309675-37309408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
6-295
               

               
Cow position:
               
chr1:56477430-56477722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
6-296
               

               
Cow position:
               
chr1:36998027-36998316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
6-297
               

               
Cow position:
               
chr1:89510086-89509789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
6-300
               

               
Cow position:
               
chr1:81228505-81228199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
5, 265
               

               
Conread position:
               
6-306
               

               
Cow position:
               
chr1:10778405-10778704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
201, 24
               

               
Conread position:
               
6-306
               

               
Cow position:
               
chr1:53671903-53671609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
6-311
               

               
Cow position:
               
chr1:24778143-24777847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
6-314
               

               
Cow position:
               
chr1:57575920-57575614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
102, 7
               

               
Conread position:
               
6-315
               

               
Cow position:
               
chr1:90621668-90621353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 6
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr1:86110889-86110592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr1:97231795-97232123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 142
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:96081324-96081613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
52, 133
               

               
Conread position:
               
8-314
               

               
Cow position:
               
chr1:197163-196856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 5
               

               
Conread position:
               
8-314
               

               
Cow position:
               
chr1:81569190-81568879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
100, 5
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr1:68855009-68855322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
9-322
               

               
Cow position:
               
chr1:47658188-47658498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
9-322
               

               
Cow position:
               
chr1:74084358-74084038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
10-297
               

               
Cow position:
               
chr1:72011968-72011683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
10-300
               

               
Cow position:
               
chr1:51394264-51394554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
10-306
               

               
Cow position:
               
chr1:53308547-53308253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
11, 18
               

               
Conread position:
               
10-322
               

               
Cow position:
               
chr1:43872485-43872159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
11-280
               

               
Cow position:
               
chr1:68862875-68863147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
11-284
               

               
Cow position:
               
chr1:100800200-100800472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr1:41252558-41252285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
11-311
               

               
Cow position:
               
chr1:69264657-69264955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
11-311
               

               
Cow position:
               
chr1:71253710-71253410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
89, 129
               

               
Conread position:
               
11-322
               

               
Cow position:
               
chr1:64804263-64803947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
13-314
               

               
Cow position:
               
chr1:42887418-42887130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
15-277
               

               
Cow position:
               
chr1:19482228-19481970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
15-308
               

               
Cow position:
               
chr1:39510203-39509913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
24, 125
               

               
Conread position:
               
15-311
               

               
Cow position:
               
chr1:90868592-90868293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
93, 39
               

               
Conread position:
               
17-322
               

               
Cow position:
               
chr1:8471-8768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:72068990-72068681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
19-276
               

               
Cow position:
               
chr1:64251201-64250941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
84, 135
               

               
Conread position:
               
19-287
               

               
Cow position:
               
chr1:24876116-24876384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
19-311
               

               
Cow position:
               
chr1:77880884-77880589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
22-302
               

               
Cow position:
               
chr1:79640438-79640151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
23-314
               

               
Cow position:
               
chr1:45555219-45555516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
84, 121
               

               
Conread position:
               
26-314
               

               
Cow position:
               
chr1:71079098-71078812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
27-257
               

               
Cow position:
               
chr1:5023897-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
212, 110
               

               
Conread position:
               
27-276
               

               
Cow position:
               
chr1:30047735-30047492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 113
               

               
Conread position:
               
27-277
               

               
Cow position:
               
chr1:85866007-85866271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
27-282
               

               
Cow position:
               
chr1:42545928-42545662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
27-287
               

               
Cow position:
               
chr1:17196770-17196505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
27-299
               

               
Cow position:
               
chr1:94261401-94261669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 44
               

               
Conread position:
               
27-302
               

               
Cow position:
               
chr1:43311914-43311634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
27-314
               

               
Cow position:
               
chr1:56225325-56225619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 114
               

               
Conread position:
               
27-322
               

               
Cow position:
               
chr1:23999060-23998773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
27-322
               

               
Cow position:
               
chr1:63530432-63530709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
28-228
               

               
Cow position:
               
chr1:85301278-85301480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
75, 119
               

               
Conread position:
               
28-294
               

               
Cow position:
               
chr1:24542722-24542440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
80, 154
               

               
Conread position:
               
28-297
               

               
Cow position:
               
chr1:102349895-102349618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
28-298
               

               
Cow position:
               
chr1:22525738-22526012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
28-301
               

               
Cow position:
               
chr1:92369591-92369870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 123
               

               
Conread position:
               
28-302
               

               
Cow position:
               
chr1:31272582-31272304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 102
               

               
Conread position:
               
28-305
               

               
Cow position:
               
chr1:89448757-89449039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 117
               

               
Conread position:
               
29-244
               

               
Cow position:
               
chr1:6788425-6788204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
29-264
               

               
Cow position:
               
chr1:43703268-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
29-270
               

               
Cow position:
               
chr1:16855830-16855594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 98
               

               
Conread position:
               
29-273
               

               
Cow position:
               
chr1:75141863-75142105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
29-297
               

               
Cow position:
               
chr1:36932018-36932285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 77
               

               
Conread position:
               
29-298
               

               
Cow position:
               
chr1:3962831-3962555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
29-301
               

               
Cow position:
               
chr1:6941326-6941605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
29-301
               

               
Cow position:
               
chr1:6958739-6959018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
29-301
               

               
Cow position:
               
chr1:29935517-29935252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr1:21787191-21787473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr1:82337920-82337641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 175
               

               
Conread position:
               
29-313
               

               
Cow position:
               
chr1:68763821-68763539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
29-322
               

               
Cow position:
               
chr1:78857460-78857176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
29-322
               

               
Cow position:
               
chr1:92997038-92996736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 283
               

               
Conread position:
               
30-277
               

               
Cow position:
               
chr1:30189015-30189264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
30-305
               

               
Cow position:
               
chr1:1956466-1956195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
30-306
               

               
Cow position:
               
chr1:81290369-81290648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
76, 120
               

               
Conread position:
               
30-322
               

               
Cow position:
               
chr1:25383524-25383819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
31-291
               

               
Cow position:
               
chr1:54478187-54478455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
31-302
               

               
Cow position:
               
chr1:41047437-41047165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
31-302
               

               
Cow position:
               
chr1:89342131-89341843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 5
               

               
Conread position:
               
32-180
               

               
Cow position:
               
chr1:94404076-94404229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 107
               

               
Conread position:
               
32-181
               

               
Cow position:
               
chr1:12596040-12595885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 107
               

               
Conread position:
               
32-192
               

               
Cow position:
               
chr1:40069106-40069263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
32-207
               

               
Cow position:
               
chr1:99039489-99039313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 102
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr1:44155113-44155308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
32-228
               

               
Cow position:
               
chr1:51968325-51968525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
32-235
               

               
Cow position:
               
chr1:24413307-24413519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 118
               

               
Conread position:
               
32-241
               

               
Cow position:
               
chr1:87440332-87440543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
72, 109
               

               
Conread position:
               
32-254
               

               
Cow position:
               
chr1:52753302-52753071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
32-254
               

               
Cow position:
               
chr1:91816906-91816682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
32-264
               

               
Cow position:
               
chr1:91800738-91800499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 113
               

               
Conread position:
               
32-269
               

               
Cow position:
               
chr1:81563600-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
32-270
               

               
Cow position:
               
chr1:62291827-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 75
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr1:101634568-101634819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
32-273
               

               
Cow position:
               
chr1:20204891-20205135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
32-274
               

               
Cow position:
               
chr1:70434867-70435107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
75, 105
               

               
Conread position:
               
32-275
               

               
Cow position:
               
chr1:35162271-35162520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
32-275
               

               
Cow position:
               
chr1:89230364-89230121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
32-276
               

               
Cow position:
               
chr1:12978544-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 108
               

               
Conread position:
               
32-276
               

               
Cow position:
               
chr1:85647918-85647671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
73, 114
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr1:42874083-42873838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
153, 101
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr1:97954595-97954356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
73, 91
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chr1:7350406-7350661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
76, 96
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:45289008-45288756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
32-281
               

               
Cow position:
               
chr1:70380282-70380027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 111
               

               
Conread position:
               
32-282
               

               
Cow position:
               
chr1:70538471-70538728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 112
               

               
Conread position:
               
32-282
               

               
Cow position:
               
chr1:88652494-88652753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
76, 116
               

               
Conread position:
               
32-284
               

               
Cow position:
               
chr1:49795870-49796113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
32-284
               

               
Cow position:
               
chr1:82884526-82884276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
76, 106
               

               
Conread position:
               
32-288
               

               
Cow position:
               
chr1:64678565-64678818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
71, 101
               

               
Conread position:
               
32-292
               

               
Cow position:
               
chr1:5135830-5135580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 68
               

               
Conread position:
               
32-293
               

               
Cow position:
               
chr1:83583070-83582805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
32-293
               

               
Cow position:
               
chr1:96277191-96276921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
32-294
               

               
Cow position:
               
chr1:77720371-77720122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 90
               

               
Conread position:
               
32-296
               

               
Cow position:
               
chr1:3923931-3923669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
32-296
               

               
Cow position:
               
chr1:52039500-52039767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 124
               

               
Conread position:
               
32-296
               

               
Cow position:
               
chr1:93043893-93044148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
32-296
               

               
Cow position:
               
chr1:97696604-97696875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
32-296
               

               
Cow position:
               
chr1:101632475-101632207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 110
               

               
Conread position:
               
32-297
               

               
Cow position:
               
chr1:72304507-72304257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
76, 99
               

               
Conread position:
               
32-297
               

               
Cow position:
               
chr1:77683221-77683487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
124, 76
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr1:24534390-24534123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr1:45019943-45019666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr1:59518784-59519049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
64, 117
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr1:68619070-68618800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr1:91066289-91066019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
76, 121
               

               
Conread position:
               
32-299
               

               
Cow position:
               
chr1:4291022-4291298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
26, 188
               

               
Conread position:
               
32-299
               

               
Cow position:
               
chr1:37322138-37321868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
32-299
               

               
Cow position:
               
chr1:82936722-82936465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
63, 89
               

               
Conread position:
               
32-299
               

               
Cow position:
               
chr1:95176803-95177071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
65, 106
               

               
Conread position:
               
32-299
               

               
Cow position:
               
chr1:95499628-95499363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
32-300
               

               
Cow position:
               
chr1:61884783-61885048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
32-300
               

               
Cow position:
               
chr1:73960569-73960835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
76, 200
               

               
Conread position:
               
32-301
               

               
Cow position:
               
chr1:43505388-43505663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 260
               

               
Conread position:
               
32-301
               

               
Cow position:
               
chr1:84812069-84811802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chr1:12464802-12464528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 113
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chr1:13637809-13637527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
47, 115
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chr1:48730960-48730694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chr1:53397855-53398111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 98
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chr1:68817935-68817662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chr1:70828767-70829041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chr1:74956158-74955886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chr1:87197691-87197958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 66
               

               
Conread position:
               
32-305
               

               
Cow position:
               
chr1:69678458-69678185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
63, 104
               

               
Conread position:
               
32-305
               

               
Cow position:
               
chr1:86682699-86682428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
51, 114
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr1:18936966-18936697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 112
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr1:22728915-22729195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
68, 254
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr1:51445743-51446029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr1:81613253-81613531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 106
               

               
Conread position:
               
32-307
               

               
Cow position:
               
chr1:88913182-88913459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
76, 109
               

               
Conread position:
               
32-308
               

               
Cow position:
               
chr1:41696922-41697199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
71, 113
               

               
Conread position:
               
32-309
               

               
Cow position:
               
chr1:98360541-98360262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
32-309
               

               
Cow position:
               
chr1:98551580-98551863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 116
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr1:68253455-68253740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
68, 102
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:18780470-18780183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:21835809-21836075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:23512791-23512516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
71, 106
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:27380338-27380602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
269, 52
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:52994891-52995170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:57297337-57297637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:57900875-57900578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:65909390-65909658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:83747810-83748089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
32-311
               

               
Cow position:
               
chr1:85162680-85162401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
66, 111
               

               
Conread position:
               
32-314
               

               
Cow position:
               
chr1:5597334-5597062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
194, 66
               

               
Conread position:
               
32-314
               

               
Cow position:
               
chr1:15333745-15334038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
32-314
               

               
Cow position:
               
chr1:53520771-53521064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 117
               

               
Conread position:
               
32-314
               

               
Cow position:
               
chr1:75744724-75745013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
72, 117
               

               
Conread position:
               
32-314
               

               
Cow position:
               
chr1:93499490-93499769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
46, 105
               

               
Conread position:
               
32-314
               

               
Cow position:
               
chr1:101713985-101714266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr1:101834688-101834962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
32-316
               

               
Cow position:
               
chr1:7971285-7971561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
32-316
               

               
Cow position:
               
chr1:24407023-24406749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
32-317
               

               
Cow position:
               
chr1:50931112-50930827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
32-320
               

               
Cow position:
               
chr1:44506831-44507116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
32-320
               

               
Cow position:
               
chr1:52913011-52912745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:1981250-1980959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:8287750-8287480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:28563705-28563411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 183
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:33207007-33206724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
76, 112
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:34771640-34771346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
76, 116
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:37707101-37706816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:41056547-41056830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:42175588-42175878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
77, 112
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:61005698-61005410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:61564660-61564931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 107
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:63434942-63434648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:79844330-79844628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:83072307-83072592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 107
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:84910764-84910491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 86
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:91023604-91023316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 109
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:91811651-91811932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
33-266
               

               
Cow position:
               
chr1:20384755-20384522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
33-271
               

               
Cow position:
               
chr1:81868861-81868623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
33-271
               

               
Cow position:
               
chr1:100393296-100393057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 102
               

               
Conread position:
               
33-276
               

               
Cow position:
               
chr1:60281235-60281484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 117
               

               
Conread position:
               
33-277
               

               
Cow position:
               
chr1:38401659-38401911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 50
               

               
Conread position:
               
33-293
               

               
Cow position:
               
chr1:8129102-8128839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 111
               

               
Conread position:
               
33-293
               

               
Cow position:
               
chr1:39418257-39417987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 113
               

               
Conread position:
               
33-297
               

               
Cow position:
               
chr1:64302383-64302110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
33-298
               

               
Cow position:
               
chr1:20667877-20667610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 238
               

               
Conread position:
               
33-298
               

               
Cow position:
               
chr1:98030783-98031055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
44, 236
               

               
Conread position:
               
33-299
               

               
Cow position:
               
chr1:91875043-91874783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
33-299
               

               
Cow position:
               
chr1:98461159-98461422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
33-301
               

               
Cow position:
               
chr1:11729046-11729311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
126, 73
               

               
Conread position:
               
33-301
               

               
Cow position:
               
chr1:100761944-100762213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
33-302
               

               
Cow position:
               
chr1:39069090-39068819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
33-302
               

               
Cow position:
               
chr1:55705385-55705106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
72, 108
               

               
Conread position:
               
33-302
               

               
Cow position:
               
chr1:100551833-100552112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
33-305
               

               
Cow position:
               
chr1:93554708-93554976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
33-306
               

               
Cow position:
               
chr1:47233614-47233335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 120
               

               
Conread position:
               
33-308
               

               
Cow position:
               
chr1:3882600-3882316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
51, 113
               

               
Conread position:
               
33-315
               

               
Cow position:
               
chr1:97090192-97090471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
33-322
               

               
Cow position:
               
chr1:49433397-49433111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
33-322
               

               
Cow position:
               
chr1:53458561-53458850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
33-322
               

               
Cow position:
               
chr1:54258428-54258719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 204
               

               
Conread position:
               
33-322
               

               
Cow position:
               
chr1:61742103-61741813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 45
               

               
Conread position:
               
34-281
               

               
Cow position:
               
chr1:40599909-40600157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
74, 230
               

               
Conread position:
               
34-290
               

               
Cow position:
               
chr1:102784829-102785078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
34-296
               

               
Cow position:
               
chr1:97611787-97611526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
34-297
               

               
Cow position:
               
chr1:54206953-54206684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 179
               

               
Conread position:
               
34-302
               

               
Cow position:
               
chr1:78810905-78811176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
74, 105
               

               
Conread position:
               
34-306
               

               
Cow position:
               
chr1:3167203-3166935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
74, 109
               

               
Conread position:
               
34-311
               

               
Cow position:
               
chr1:48105568-48105288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
34-316
               

               
Cow position:
               
chr1:34159700-34159993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
34-322
               

               
Cow position:
               
chr1:62964144-62964418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
35-276
               

               
Cow position:
               
chr1:44125780-44125527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
73, 189
               

               
Conread position:
               
35-281
               

               
Cow position:
               
chr1:89497832-89498062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
35-282
               

               
Cow position:
               
chr1:89349829-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 115
               

               
Conread position:
               
35-286
               

               
Cow position:
               
chr1:85028825-85029075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
35-292
               

               
Cow position:
               
chr1:78838665-78838922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
71, 103
               

               
Conread position:
               
35-294
               

               
Cow position:
               
chr1:85774327-85774586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
35-301
               

               
Cow position:
               
chr1:96947837-96947585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
35-313
               

               
Cow position:
               
chr1:85550211-85549932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
35-316
               

               
Cow position:
               
chr1:39427126-39426852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
239, 27
               

               
Conread position:
               
35-322
               

               
Cow position:
               
chr1:24133191-24132913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
35-322
               

               
Cow position:
               
chr1:48580997-48581280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
36-296
               

               
Cow position:
               
chr1:64572381-64572648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
72, 102
               

               
Conread position:
               
36-302
               

               
Cow position:
               
chr1:78096804-78097064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
36-322
               

               
Cow position:
               
chr1:92197332-92197608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
37-320
               

               
Cow position:
               
chr1:26934392-26934120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
58, 95
               

               
Conread position:
               
37-322
               

               
Cow position:
               
chr1:78079596-78079873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 104
               

               
Conread position:
               
38-297
               

               
Cow position:
               
chr1:24581453-24581708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
38-298
               

               
Cow position:
               
chr1:10632918-10633179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
38-314
               

               
Cow position:
               
chr1:89381144-89381424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
70, 106
               

               
Conread position:
               
39-277
               

               
Cow position:
               
chr1:71295438-71295180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
39-282
               

               
Cow position:
               
chr1:93810300-93810546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 107
               

               
Conread position:
               
39-295
               

               
Cow position:
               
chr1:74822326-74822581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 93
               

               
Conread position:
               
40-281
               

               
Cow position:
               
chr1:72286185-72285952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
40-290
               

               
Cow position:
               
chr1:80899989-80900243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 100
               

               
Conread position:
               
42-299
               

               
Cow position:
               
chr1:84255632-84255903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 104
               

               
Conread position:
               
42-301
               

               
Cow position:
               
chr1:62036685-62036937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
43-322
               

               
Cow position:
               
chr1:58754920-58754647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
44-316
               

               
Cow position:
               
chr1:3790190-3789916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
45-302
               

               
Cow position:
               
chr1:43389173-43388915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
46-301
               

               
Cow position:
               
chr1:20104146-20104403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
62, 99
               

               
Conread position:
               
49-302
               

               
Cow position:
               
chr1:89388224-89388481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
49-322
               

               
Cow position:
               
chr1:261598-261313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
46, 162
               

               
Conread position:
               
49-322
               

               
Cow position:
               
chr1:9437428-9437129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
54-322
               

               
Cow position:
               
chr1:98511813-98512091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
56-308
               

               
Cow position:
               
chr1:7023008-7023262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
56-311
               

               
Cow position:
               
chr1:45553356-45553097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
47, 89
               

               
Conread position:
               
56-314
               

               
Cow position:
               
chr1:56618763-56618506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
48, 91
               

               
Conread position:
               
56-322
               

               
Cow position:
               
chr1:10716390-10716655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 71
               

               
Conread position:
               
57-322
               

               
Cow position:
               
chr1:3323760-3324024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
60-276
               

               
Cow position:
               
chr1:6752336-6752120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
60-297
               

               
Cow position:
               
chr1:67688689-67688451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
14, 174
               

               
Conread position:
               
61-286
               

               
Cow position:
               
chr1:65028422-65028655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
62-295
               

               
Cow position:
               
chr1:42360176-42360418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 205
               

               
Conread position:
               
64-311
               

               
Cow position:
               
chr1:81580071-81580323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 156
               

               
Conread position:
               
64-322
               

               
Cow position:
               
chr1:72356254-72356518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
66-272
               

               
Cow position:
               
chr1:19227157-19226950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
67-297
               

               
Cow position:
               
chr1:98583662-98583885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
67-322
               

               
Cow position:
               
chr1:22823804-22824059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr1:82513456-82513218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
68-302
               

               
Cow position:
               
chr1:51044406-51044170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
68-311
               

               
Cow position:
               
chr1:77232668-77232432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
74-267
               

               
Cow position:
               
chr1:30504417-30504603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
79-290
               

               
Cow position:
               
chr1:4581416-4581204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
79-294
               

               
Cow position:
               
chr1:52662253-52662045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
85-321
               

               
Cow position:
               
chr1:53370006-53370235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
86-316
               

               
Cow position:
               
chr1:79003900-79004120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
87-273
               

               
Cow position:
               
chr1:43286270-43286452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
90-301
               

               
Cow position:
               
chr1:95974322-95974535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 197
               

               
Conread position:
               
90-314
               

               
Cow position:
               
chr1:81481456-81481235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
94-224
               

               
Cow position:
               
chr1:41695533-41695660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
94-275
               

               
Cow position:
               
chr1:100450247-100450066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
94-277
               

               
Cow position:
               
chr1:52467235-52467415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
133, 39
               

               
Conread position:
               
94-287
               

               
Cow position:
               
chr1:52052787-52052595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
94-287
               

               
Cow position:
               
chr1:99793477-99793672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
94-289
               

               
Cow position:
               
chr1:102306209-102306022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
94-295
               

               
Cow position:
               
chr1:68826971-68826782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
199, 43
               

               
Conread position:
               
94-296
               

               
Cow position:
               
chr1:25281727-25281524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
182, 43
               

               
Conread position:
               
94-297
               

               
Cow position:
               
chr1:42541531-42541729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
94-297
               

               
Cow position:
               
chr1:69695058-69694862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
94-299
               

               
Cow position:
               
chr1:27463064-27463268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
94-299
               

               
Cow position:
               
chr1:45223513-45223715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
94-301
               

               
Cow position:
               
chr1:76658148-76657931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
94-301
               

               
Cow position:
               
chr1:89158196-89157989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
94-305
               

               
Cow position:
               
chr1:79135212-79135418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
94-306
               

               
Cow position:
               
chr1:80841586-80841785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
94-311
               

               
Cow position:
               
chr1:48769737-48769947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
94-311
               

               
Cow position:
               
chr1:50991868-50992080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
94-311
               

               
Cow position:
               
chr1:68672666-68672456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
94-311
               

               
Cow position:
               
chr1:95153153-95153368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
94-317
               

               
Cow position:
               
chr1:186343-186129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
94-322
               

               
Cow position:
               
chr1:30983557-30983342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
169, 47
               

               
Conread position:
               
94-322
               

               
Cow position:
               
chr1:37726486-37726265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
94-322
               

               
Cow position:
               
chr1:46030893-46031113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
94-322
               

               
Cow position:
               
chr1:92684758-92684531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
95-310
               

               
Cow position:
               
chr1:86912373-86912587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
184, 42
               

               
Conread position:
               
95-311
               

               
Cow position:
               
chr1:98575980-98576193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
95-322
               

               
Cow position:
               
chr1:54267999-54267790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
95-322
               

               
Cow position:
               
chr1:95072264-95072493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
199, 47
               

               
Conread position:
               
95-322
               

               
Cow position:
               
chr1:100474164-100474389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
96-282
               

               
Cow position:
               
chr1:42537389-42537205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
97-297
               

               
Cow position:
               
chr1:78066602-78066404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
98-287
               

               
Cow position:
               
chr1:5155282-5155098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
99-318
               

               
Cow position:
               
chr1:60901012-60901226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
101-301
               

               
Cow position:
               
chr1:98059990-98060198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
101-305
               

               
Cow position:
               
chr1:3942270-3942078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
101-306
               

               
Cow position:
               
chr1:54156793-54156596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
101-320
               

               
Cow position:
               
chr1:88359821-88360033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
102-322
               

               
Cow position:
               
chr1:3965781-3965986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
104-244
               

               
Cow position:
               
chr1:61560783-61560644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
104-277
               

               
Cow position:
               
chr1:30136411-30136242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
104-283
               

               
Cow position:
               
chr1:35671486-35671659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
104-298
               

               
Cow position:
               
chr1:84768936-84768746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
104-302
               

               
Cow position:
               
chr1:67646172-67646380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
104-307
               

               
Cow position:
               
chr1:80584374-80584571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
104-309
               

               
Cow position:
               
chr1:64113851-64113647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
104-314
               

               
Cow position:
               
chr1:48618296-48618097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
104-314
               

               
Cow position:
               
chr1:49825126-49824915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
104-314
               

               
Cow position:
               
chr1:61012253-61012456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
104-321
               

               
Cow position:
               
chr1:37886866-37886656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
106-295
               

               
Cow position:
               
chr1:101507303-101507489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
106-298
               

               
Cow position:
               
chr1:46143517-46143330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
106-311
               

               
Cow position:
               
chr1:8347069-8347269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
106-311
               

               
Cow position:
               
chr1:99221409-99221210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
106-315
               

               
Cow position:
               
chr1:48206590-48206386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
106-316
               

               
Cow position:
               
chr1:31357566-31357362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
106-316
               

               
Cow position:
               
chr1:82880590-82880796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
194, 30
               

               
Conread position:
               
107-299
               

               
Cow position:
               
chr1:69482005-69481816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
113-300
               

               
Cow position:
               
chr1:79146868-79146684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
113-306
               

               
Cow position:
               
chr1:49153268-49153459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
158, 94
               

               
Conread position:
               
114-302
               

               
Cow position:
               
chr1:97833663-97833843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
115-277
               

               
Cow position:
               
chr1:92590149-92590303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
115-311
               

               
Cow position:
               
chr1:57090930-57091126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
159, 27
               

               
Conread position:
               
116-311
               

               
Cow position:
               
chr1:816456-816264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
120-314
               

               
Cow position:
               
chr1:85771968-85772155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
120-322
               

               
Cow position:
               
chr1:62997756-62997951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
124-311
               

               
Cow position:
               
chr1:8670736-8670920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
158, 16
               

               
Conread position:
               
125-322
               

               
Cow position:
               
chr1:33775682-33775485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
127-317
               

               
Cow position:
               
chr1:82556447-82556260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
129-322
               

               
Cow position:
               
chr1:38706890-38706702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
131-276
               

               
Cow position:
               
chr1:83618641-83618493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
131-302
               

               
Cow position:
               
chr1:90904790-90904619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
131-322
               

               
Cow position:
               
chr1:101177482-101177672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
133-301
               

               
Cow position:
               
chr1:79630934-79630781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
133-314
               

               
Cow position:
               
chr1:62034860-62034680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
134-298
               

               
Cow position:
               
chr1:48214185-48214025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
136-322
               

               
Cow position:
               
chr1:73721331-73721514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
123, 136
               

               
Conread position:
               
137-314
               

               
Cow position:
               
chr1:41027047-41027222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
137-314
               

               
Cow position:
               
chr1:49980682-49980858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
138-278
               

               
Cow position:
               
chr1:53452511-53452648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
139-296
               

               
Cow position:
               
chr1:63078984-63079138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
140-298
               

               
Cow position:
               
chr1:84288378-84288535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
142-297
               

               
Cow position:
               
chr1:54157271-54157428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
142-302
               

               
Cow position:
               
chr1:83025187-83025027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
115, 137
               

               
Conread position:
               
142-302
               

               
Cow position:
               
chr1:100852686-100852846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
142-322
               

               
Cow position:
               
chr1:102768158-102768328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
143-306
               

               
Cow position:
               
chr1:74082004-74081842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 143
               

               
Conread position:
               
143-311
               

               
Cow position:
               
chr1:9143700-9143866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
144-301
               

               
Cow position:
               
chr1:24530481-24530635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
144-308
               

               
Cow position:
               
chr1:45478880-45478720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
145-277
               

               
Cow position:
               
chr1:27959570-27959439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
145-280
               

               
Cow position:
               
chr1:45575914-45576048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
145-296
               

               
Cow position:
               
chr1:55753235-55753085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
145-302
               

               
Cow position:
               
chr1:93590606-93590449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-305
               

               
Cow position:
               
chr1:98911988-98912143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
124, 64
               

               
Conread position:
               
145-311
               

               
Cow position:
               
chr1:40935787-40935619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
122, 144
               

               
Conread position:
               
145-314
               

               
Cow position:
               
chr1:67654340-67654172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
146-322
               

               
Cow position:
               
chr1:31855266-31855079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
147-305
               

               
Cow position:
               
chr1:68845187-68845030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
147-313
               

               
Cow position:
               
chr1:19962035-19962198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
149-322
               

               
Cow position:
               
chr1:45315652-45315481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
151-316
               

               
Cow position:
               
chr1:95152856-95153018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 59
               

               
Conread position:
               
152-322
               

               
Cow position:
               
chr1:759431-759263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
153-268
               

               
Cow position:
               
chr1:83067059-83066944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
154-272
               

               
Cow position:
               
chr1:31598914-31599032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
154-294
               

               
Cow position:
               
chr1:61011170-61011310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
154-314
               

               
Cow position:
               
chr1:66752640-66752482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
154-316
               

               
Cow position:
               
chr1:6381761-6381920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
154-320
               

               
Cow position:
               
chr1:56711610-56711448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
154-322
               

               
Cow position:
               
chr1:95835809-95835645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
155-277
               

               
Cow position:
               
chr1:52429670-52429548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-301
               

               
Cow position:
               
chr1:68688573-68688717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
155-322
               

               
Cow position:
               
chr1:73719451-73719621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
158-311
               

               
Cow position:
               
chr1:97750626-97750473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
161-314
               

               
Cow position:
               
chr1:99605191-99605039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
161-322
               

               
Cow position:
               
chr1:50329491-50329647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
163-311
               

               
Cow position:
               
chr1:83783932-83783784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
144, 121
               

               
Conread position:
               
167-295
               

               
Cow position:
               
chr1:69185720-69185600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
167-322
               

               
Cow position:
               
chr1:83606448-83606297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
167-322
               

               
Cow position:
               
chr1:101525923-101525770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
168-302
               

               
Cow position:
               
chr1:55685975-55685840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
168-306
               

               
Cow position:
               
chr1:42774914-42775049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
168-307
               

               
Cow position:
               
chr1:53640718-53640854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
168-322
               

               
Cow position:
               
chr1:73551507-73551352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
170-311
               

               
Cow position:
               
chr1:44269096-44269236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
170-318
               

               
Cow position:
               
chr1:84779633-84779494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
173-301
               

               
Cow position:
               
chr1:70483326-70483196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
173-322
               

               
Cow position:
               
chr1:71946076-71945929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
175-294
               

               
Cow position:
               
chr1:71636315-71636195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
175-302
               

               
Cow position:
               
chr1:50585868-50585738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
178-295
               

               
Cow position:
               
chr1:85339400-85339514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
179-305
               

               
Cow position:
               
chr1:70416746-70416621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
179-322
               

               
Cow position:
               
chr1:29671210-29671069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
180-322
               

               
Cow position:
               
chr1:69378584-69378448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
180-322
               

               
Cow position:
               
chr1:102730747-102730607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
182-306
               

               
Cow position:
               
chr1:76474540-76474419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
184-302
               

               
Cow position:
               
chr1:3417374-3417494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
185-295
               

               
Cow position:
               
chr1:28354577-28354684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
188-322
               

               
Cow position:
               
chr1:73494573-73494441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
203-312
               

               
Cow position:
               
chr1:79170115-79170006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr10:51942587-51942886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 149
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr10:37818756-37818454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr10:17175837-17176129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 150
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr10:10148460-10148770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr10:22528099-22527819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
6-281
               

               
Cow position:
               
chr10:8923090-8923366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
98, 6
               

               
Conread position:
               
6-297
               

               
Cow position:
               
chr10:22321328-22321625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
6-302
               

               
Cow position:
               
chr10:35802563-35802253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
6-311
               

               
Cow position:
               
chr10:6252668-6252377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
253, 9
               

               
Conread position:
               
6-311
               

               
Cow position:
               
chr10:50609354-50609666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
97, 6
               

               
Conread position:
               
6-314
               

               
Cow position:
               
chr10:38725461-38725772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
19, 148
               

               
Conread position:
               
6-316
               

               
Cow position:
               
chr10:32583721-32584029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr10:5151163-5151470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr10:47542893-47543199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
7-277
               

               
Cow position:
               
chr10:41254762-41254495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
7-282
               

               
Cow position:
               
chr10:27828139-27828410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr10:34175182-34174860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
9-272
               

               
Cow position:
               
chr10:38014177-38014443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
9-305
               

               
Cow position:
               
chr10:57461164-57461466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 134
               

               
Conread position:
               
10-277
               

               
Cow position:
               
chr10:8934296-8934553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
10-277
               

               
Cow position:
               
chr10:23936292-23936559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
20, 137
               

               
Conread position:
               
10-295
               

               
Cow position:
               
chr10:28671013-28670718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
10-298
               

               
Cow position:
               
chr10:49146333-49146618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
10-314
               

               
Cow position:
               
chr10:21422335-21422042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
10-315
               

               
Cow position:
               
chr10:19372528-19372214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
15, 142
               

               
Conread position:
               
10-322
               

               
Cow position:
               
chr10:12392793-12392484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
10-322
               

               
Cow position:
               
chr10:16598498-16598811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
11-275
               

               
Cow position:
               
chr10:12486077-12486343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
11-275
               

               
Cow position:
               
chr10:29339568-29339316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
11-276
               

               
Cow position:
               
chr10:33733055-33732791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 129
               

               
Conread position:
               
11-284
               

               
Cow position:
               
chr10:37415605-37415881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
11-301
               

               
Cow position:
               
chr10:23912686-23912405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
11-301
               

               
Cow position:
               
chr10:28395487-28395197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 74
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr10:9576225-9575941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
11-311
               

               
Cow position:
               
chr10:15293087-15293381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
54, 70
               

               
Conread position:
               
11-320
               

               
Cow position:
               
chr10:6852084-6852382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
11-322
               

               
Cow position:
               
chr10:5889956-5889639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
19-282
               

               
Cow position:
               
chr10:30613658-30613914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 118
               

               
Conread position:
               
19-297
               

               
Cow position:
               
chr10:3998725-3999011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
19-302
               

               
Cow position:
               
chr10:14947083-14947361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
19-308
               

               
Cow position:
               
chr10:24763299-24763596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
19-311
               

               
Cow position:
               
chr10:51696564-51696855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
21-306
               

               
Cow position:
               
chr10:16093038-16093320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
57, 125
               

               
Conread position:
               
23-311
               

               
Cow position:
               
chr10:15115440-15115731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
23-322
               

               
Cow position:
               
chr10:44764680-44764371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
34, 255
               

               
Conread position:
               
26-295
               

               
Cow position:
               
chr10:12314983-12315246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
7, 110
               

               
Conread position:
               
27-269
               

               
Cow position:
               
chr10:33240849-33240608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 119
               

               
Conread position:
               
27-277
               

               
Cow position:
               
chr10:68183113-68182872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
27-292
               

               
Cow position:
               
chr10:31400006-31400272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
27-298
               

               
Cow position:
               
chr10:2704038-2704300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
78, 87
               

               
Conread position:
               
27-302
               

               
Cow position:
               
chr10:4109418-4109694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 117
               

               
Conread position:
               
27-322
               

               
Cow position:
               
chr10:59664147-59663843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
28-291
               

               
Cow position:
               
chr10:2849183-2849445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 125
               

               
Conread position:
               
28-296
               

               
Cow position:
               
chr10:34430391-34430124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
5, 114
               

               
Conread position:
               
28-302
               

               
Cow position:
               
chr10:31534574-31534844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
156, 19
               

               
Conread position:
               
29-256
               

               
Cow position:
               
chr10:2202294-2202057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
29-270
               

               
Cow position:
               
chr10:17863418-17863661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
29-273
               

               
Cow position:
               
chr10:68829450-68829207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
29-282
               

               
Cow position:
               
chr10:29279272-29279533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 152
               

               
Conread position:
               
29-287
               

               
Cow position:
               
chr10:2613197-2613460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 116
               

               
Conread position:
               
29-297
               

               
Cow position:
               
chr10:64285962-64285691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 55
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr10:54476937-54477208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 115
               

               
Conread position:
               
29-303
               

               
Cow position:
               
chr10:21082215-21082489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
29-314
               

               
Cow position:
               
chr10:24276902-24276608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
29-314
               

               
Cow position:
               
chr10:30523236-30522944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
29-322
               

               
Cow position:
               
chr10:6489700-6489998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 121
               

               
Conread position:
               
29-322
               

               
Cow position:
               
chr10:25699483-25699781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 71
               

               
Conread position:
               
29-322
               

               
Cow position:
               
chr10:47690224-47690519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
83, 18
               
29-322UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:48257446-48257154 (view  custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
84, 119
               
30-321UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:59588336-59588056 (view  custom track)

               
               
               
Alignm length:
294

               
               
               
Alignm identity:
191

               
               
               
Alignm E-value:
7e-23

               
               
               
Alignm gaps (pig, cow):
35, 98
32-185UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:19678705-19678864 (view  custom track)

               
               
               
Alignm length:
162

               
               
               
Alignm identity:
127

               
               
               
Alignm E-value:
1e-27

               
               
               
Alignm gaps (pig, cow):
76, 117

               
               
               Conread position:32-205
               
               
               Cow position:chr10:55580430-55580263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:32-228
               
               
               Cow position:chr10:22520330-22520128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:32-240
               
               
               Cow position:chr10:1427877-1428085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:32-241
               
               
               Cow position:chr10:39304017-39303800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:32-258
               
               
               Cow position:chr10:24744381-24744609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-259
               
               
               Cow position:chr10:10963824-10964052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:32-259
               
               
               Cow position:chr10:54469560-54469329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-260
               
               
               Cow position:chr10:805032-805255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:32-260
               
               
               Cow position:chr10:42893131-42892905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:32-264
               
               
               Cow position:chr10:24781021-24781258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-265
               
               
               Cow position:chr10:5264654-5264881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:32-272
               
               
               Cow position:chr10:20897140-20897365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:32-275
               
               
               Cow position:chr10:13391216-13390967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-276
               
               
               Cow position:chr10:28105249-28104998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:32-276
               
               
               Cow position:chr10:47412271-47412025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-277
               
               
               Cow position:chr10:15318717-15318968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:32-277
               
               
               Cow position:chr10:22434086-22433828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:32-277
               
               
               Cow position:chr10:39875312-39875071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:32-277
               
               
               Cow position:chr10:63940607-63940860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:32-278
               
               
               Cow position:chr10:21462071-21462326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:32-282
               
               
               Cow position:chr10:15462323-15462590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-282
               
               
               Cow position:chr10:37668324-37668069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:32-282
               
               
               Cow position:chr10:53357734-53357983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:32-283
               
               
               Cow position:chr10:41941743-41941476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:32-284
               
               
               Cow position:chr10:29589007-29588750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:32-284
               
               
               Cow position:chr10:50134973-50134714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-286
               
               
               Cow position:chr10:28039103-28038841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:32-287
               
               
               Cow position:chr10:38376818-38376567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):112, 75

               
               
               Conread position:32-289
               
               
               Cow position:chr10:60237260-60237000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-291
               
               
               Cow position:chr10:55622012-55621758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:32-293
               
               
               Cow position:chr10:721135-721399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:32-293
               
               
               Cow position:chr10:23056245-23055979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-294
               
               
               Cow position:chr10:4164101-4164369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:32-294
               
               
               Cow position:chr10:23576376-23576645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:32-294
               
               
               Cow position:chr10:28840790-28841057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 5

               
               
               Conread position:32-294
               
               
               Cow position:chr10:57786173-57786440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:32-294
               
               
               Cow position:chr10:62353297-62353561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-295
               
               
               Cow position:chr10:6435892-6436164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:32-295
               
               
               Cow position:chr10:24132984-24132723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:32-295
               
               
               Cow position:chr10:37529432-37529165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-296
               
               
               Cow position:chr10:33067731-33067475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:32-297
               
               
               Cow position:chr10:22472152-22472427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:32-297
               
               
               Cow position:chr10:31362374-31362110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-297
               
               
               Cow position:chr10:34661480-34661223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:32-297
               
               
               Cow position:chr10:35791766-35792028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-297
               
               
               Cow position:chr10:51289091-51289351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:32-298
               
               
               Cow position:chr10:8093480-8093215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:32-298
               
               
               Cow position:chr10:29251999-29252267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:32-298
               
               
               Cow position:chr10:39387293-39387556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 112

               
               
               Conread position:32-298
               
               
               Cow position:chr10:53248178-53247900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 190

               
               
               Conread position:32-300
               
               
               Cow position:chr10:54504439-54504707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:32-301
               
               
               Cow position:chr10:8404048-8404320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-301
               
               
               Cow position:chr10:20553016-20553291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:32-301
               
               
               Cow position:chr10:33215634-33215904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:32-301
               
               
               Cow position:chr10:34655279-34655002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-301
               
               
               Cow position:chr10:35779068-35778796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-301
               
               
               Cow position:chr10:67627159-67626890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:32-302
               
               
               Cow position:chr10:5543412-5543143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:32-302
               
               
               Cow position:chr10:15872038-15871765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):68, 150

               
               
               Conread position:32-302
               
               
               Cow position:chr10:17073525-17073259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-302
               
               
               Cow position:chr10:21657257-21657525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:32-302
               
               
               Cow position:chr10:24756250-24756519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-302
               
               
               Cow position:chr10:35901163-35901423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):73, 105

               
               
               Conread position:32-302
               
               
               Cow position:chr10:48462505-48462238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:32-302
               
               
               Cow position:chr10:50559094-50558817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:32-302
               
               
               Cow position:chr10:59571735-59572008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:32-302
               
               
               Cow position:chr10:63883786-63884047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:32-303
               
               
               Cow position:chr10:7366952-7366679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:32-304
               
               
               Cow position:chr10:64041919-64042192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:32-305
               
               
               Cow position:chr10:31027812-31027532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-305
               
               
               Cow position:chr10:37295829-37295562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:32-305
               
               
               Cow position:chr10:45370888-45371166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-305
               
               
               Cow position:chr10:46195616-46195893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 115

               
               
               Conread position:32-305
               
               
               Cow position:chr10:52296334-52296605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:32-306
               
               
               Cow position:chr10:19549655-19549377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:32-306
               
               
               Cow position:chr10:19895232-19895504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:32-306
               
               
               Cow position:chr10:24375386-24375655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):105, 76

               
               
               Conread position:32-306
               
               
               Cow position:chr10:31401061-31400788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-306
               
               
               Cow position:chr10:37235716-37235433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:32-306
               
               
               Cow position:chr10:47773563-47773839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 182

               
               
               Conread position:32-307
               
               
               Cow position:chr10:45769876-45770156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:32-307
               
               
               Cow position:chr10:58259682-58259411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:32-308
               
               
               Cow position:chr10:52113836-52113560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-308
               
               
               Cow position:chr10:67288129-67288404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:32-310
               
               
               Cow position:chr10:3362456-3362744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:32-310
               
               
               Cow position:chr10:13311569-13311849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 136

               
               
               Conread position:32-310
               
               
               Cow position:chr10:31374261-31373975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:32-311
               
               
               Cow position:chr10:77223-77488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:32-311
               
               
               Cow position:chr10:11212949-11213229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 152

               
               
               Conread position:32-311
               
               
               Cow position:chr10:20132695-20132414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:32-311
               
               
               Cow position:chr10:22396085-22396369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):74, 123

               
               
               Conread position:32-311
               
               
               Cow position:chr10:41803060-41802774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:32-313
               
               
               Cow position:chr10:54848610-54848896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):75, 173

               
               
               Conread position:32-314
               
               
               Cow position:chr10:1978826-1978552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:32-314
               
               
               Cow position:chr10:10120032-10120313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:32-314
               
               
               Cow position:chr10:15817959-15817675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-314
               
               
               Cow position:chr10:22390422-22390716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:32-314
               
               
               Cow position:chr10:35731689-35731408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:32-314
               
               
               Cow position:chr10:35868164-35867897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):242, 18

               
               
               Conread position:32-314
               
               
               Cow position:chr10:42745749-42746032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:32-314
               
               
               Cow position:chr10:50183215-50182934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 173

               
               
               Conread position:32-314
               
               
               Cow position:chr10:52278564-52278844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:32-314
               
               
               Cow position:chr10:56828484-56828200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-315
               
               
               Cow position:chr10:30352681-30352971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:32-316
               
               
               Cow position:chr10:36002032-36002315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-319
               
               
               Cow position:chr10:49169220-49168910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:32-320
               
               
               Cow position:chr10:5600161-5599881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:32-320
               
               
               Cow position:chr10:20095591-20095885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:32-320
               
               
               Cow position:chr10:62286386-62286683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:32-321
               
               
               Cow position:chr10:7816941-7817234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:32-321
               
               
               Cow position:chr10:48317123-48316825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-322
               
               
               Cow position:chr10:2974248-2973960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 55

               
               
               Conread position:32-322
               
               
               Cow position:chr10:4184025-4184323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr10:6719735-6720026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:32-322
               
               
               Cow position:chr10:10720839-10720551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr10:11080795-11081092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr10:11463833-11463540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr10:11967008-11966725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 88

               
               
               Conread position:32-322
               
               
               Cow position:chr10:13586547-13586832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 27

               
               
               Conread position:32-322
               
               
               Cow position:chr10:16645357-16645066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr10:24561151-24560869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:32-322
               
               
               Cow position:chr10:24870998-24871291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 256

               
               
               Conread position:32-322
               
               
               Cow position:chr10:28176556-28176277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr10:28178975-28178695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:32-322
               
               
               Cow position:chr10:38370625-38370332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr10:40106940-40107223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:32-322
               
               
               Cow position:chr10:54730848-54731144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 188

               
               
               Conread position:32-322
               
               
               Cow position:chr10:57059448-57059154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:33-235
               
               
               Cow position:chr10:29816427-29816642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 212

               
               
               Conread position:33-277
               
               
               Cow position:chr10:28152545-28152297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:33-277
               
               
               Cow position:chr10:48573857-48573597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):44, 127

               
               
               Conread position:33-290
               
               
               Cow position:chr10:10043257-10043011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:33-296
               
               
               Cow position:chr10:55733765-55733506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:33-297
               
               
               Cow position:chr10:10134819-10135090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:33-304
               
               
               Cow position:chr10:6665707-6665450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:33-310
               
               
               Cow position:chr10:60960774-60961050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:33-315
               
               
               Cow position:chr10:6505198-6505472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-317
               
               
               Cow position:chr10:11247811-11248106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 115

               
               
               Conread position:33-320
               
               
               Cow position:chr10:53973682-53973963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 170

               
               
               Conread position:33-321
               
               
               Cow position:chr10:35246105-35245826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:33-322
               
               
               Cow position:chr10:37014470-37014757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:34-270
               
               
               Cow position:chr10:55849192-55849423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:34-282
               
               
               Cow position:chr10:30224522-30224769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 111

               
               
               Conread position:34-294
               
               
               Cow position:chr10:40421006-40420749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:34-302
               
               
               Cow position:chr10:13765329-13765056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:34-308
               
               
               Cow position:chr10:26209423-26209134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:34-322
               
               
               Cow position:chr10:39227981-39228275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:35-258
               
               
               Cow position:chr10:37644910-37645123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:35-293
               
               
               Cow position:chr10:53674661-53674924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:35-296
               
               
               Cow position:chr10:33665675-33665945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:35-301
               
               
               Cow position:chr10:48741323-48741054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:35-311
               
               
               Cow position:chr10:24732150-24732421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 110

               
               
               Conread position:35-314
               
               
               Cow position:chr10:52695892-52695607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:35-322
               
               
               Cow position:chr10:43487547-43487836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:36-282
               
               
               Cow position:chr10:51862236-51861991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:36-305
               
               
               Cow position:chr10:51944196-51944473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):72, 182

               
               
               Conread position:36-311
               
               
               Cow position:chr10:6530034-6530303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):243, 69

               
               
               Conread position:36-314
               
               
               Cow position:chr10:31527826-31528087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:36-320
               
               
               Cow position:chr10:57142374-57142086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:36-322
               
               
               Cow position:chr10:23506649-23506362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:37-302
               
               
               Cow position:chr10:19191615-19191861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:38-301
               
               
               Cow position:chr10:40164094-40163827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:39-302
               
               
               Cow position:chr10:17022723-17022458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 127

               
               
               Conread position:39-308
               
               
               Cow position:chr10:47651149-47651412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:39-311
               
               
               Cow position:chr10:28776191-28776467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:39-313
               
               
               Cow position:chr10:6543563-6543845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:41-277
               
               
               Cow position:chr10:25260096-25260330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:42-294
               
               
               Cow position:chr10:6384379-6384629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 86

               
               
               Conread position:42-300
               
               
               Cow position:chr10:30369967-30369717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:42-312
               
               
               Cow position:chr10:29919990-29919719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:42-322
               
               
               Cow position:chr10:16986173-16986455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:44-282
               
               
               Cow position:chr10:42451392-42451169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):201, 60

               
               
               Conread position:44-298
               
               
               Cow position:chr10:9675612-9675360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:44-311
               
               
               Cow position:chr10:24022432-24022167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:45-277
               
               
               Cow position:chr10:31116532-31116756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:45-287
               
               
               Cow position:chr10:48087734-48087981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):62, 172

               
               
               Conread position:47-186
               
               
               Cow position:chr10:17602727-17602590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:48-287
               
               
               Cow position:chr10:22633775-22633533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:48-319
               
               
               Cow position:chr10:37913337-37913063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:48-320
               
               
               Cow position:chr10:61922289-61922025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:51-297
               
               
               Cow position:chr10:33117098-33116849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:55-298
               
               
               Cow position:chr10:30360376-30360622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:56-282
               
               
               Cow position:chr10:762777-763001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:56-314
               
               
               Cow position:chr10:69997945-69997682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:57-298
               
               
               Cow position:chr10:53075980-53076217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:57-298
               
               
               Cow position:chr10:58451513-58451270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:57-322
               
               
               Cow position:chr10:27119108-27118843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):51, 159

               
               
               Conread position:58-298
               
               
               Cow position:chr10:68572221-68572456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:58-314
               
               
               Cow position:chr10:46327557-46327810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:59-306
               
               
               Cow position:chr10:15309536-15309293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:61-322
               
               
               Cow position:chr10:39123992-39124255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 75

               
               
               Conread position:63-277
               
               
               Cow position:chr10:45624285-45624074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:64-302
               
               
               Cow position:chr10:3364311-3364075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:64-314
               
               
               Cow position:chr10:37068547-37068301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:64-318
               
               
               Cow position:chr10:13315807-13316062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:68-304
               
               
               Cow position:chr10:59010265-59010026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:70-311
               
               
               Cow position:chr10:32973334-32973088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:70-314
               
               
               Cow position:chr10:7383739-7383497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:74-312
               
               
               Cow position:chr10:49948003-49947762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:75-300
               
               
               Cow position:chr10:48407020-48407244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):198, 58

               
               
               Conread position:79-295
               
               
               Cow position:chr10:24929628-24929841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 162

               
               
               Conread position:86-277
               
               
               Cow position:chr10:6198911-6199102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:86-301
               
               
               Cow position:chr10:55396084-55395870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:90-305
               
               
               Cow position:chr10:58044230-58044018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):112, 12

               
               
               Conread position:93-298
               
               
               Cow position:chr10:24447765-24447972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):134, 48

               
               
               Conread position:94-295
               
               
               Cow position:chr10:8449403-8449605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:94-297
               
               
               Cow position:chr10:46493094-46492893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:94-298
               
               
               Cow position:chr10:61510037-61509839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):185, 43

               
               
               Conread position:94-301
               
               
               Cow position:chr10:6663930-6664140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr10:22888912-22888707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-303
               
               
               Cow position:chr10:23583666-23583462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:94-306
               
               
               Cow position:chr10:60446636-60446846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):117, 37

               
               
               Conread position:94-314
               
               
               Cow position:chr10:33573337-33573127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):185, 30

               
               
               Conread position:94-320
               
               
               Cow position:chr10:15868153-15868373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr10:10750349-10750126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr10:31005115-31004895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):197, 12

               
               
               Conread position:94-322
               
               
               Cow position:chr10:33084533-33084316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr10:42230693-42230925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:94-322
               
               
               Cow position:chr10:52881716-52881494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:94-322
               
               
               Cow position:chr10:55122699-55122930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 201

               
               
               Conread position:95-292
               
               
               Cow position:chr10:54819170-54819363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:99-295
               
               
               Cow position:chr10:52827681-52827499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:99-308
               
               
               Cow position:chr10:56180474-56180678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):196, 38

               
               
               Conread position:101-289
               
               
               Cow position:chr10:37768212-37768397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:101-295
               
               
               Cow position:chr10:23390406-23390211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):158, 31

               
               
               Conread position:101-320
               
               
               Cow position:chr10:60491348-60491141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):182, 35

               
               
               Conread position:102-292
               
               
               Cow position:chr10:973051-973231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:104-269
               
               
               Cow position:chr10:48282641-48282477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-275
               
               
               Cow position:chr10:29380047-29379878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:104-289
               
               
               Cow position:chr10:44421993-44421811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:104-294
               
               
               Cow position:chr10:17293521-17293332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-301
               
               
               Cow position:chr10:23346390-23346198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:104-308
               
               
               Cow position:chr10:41760409-41760208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:104-310
               
               
               Cow position:chr10:53405389-53405588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:104-311
               
               
               Cow position:chr10:4151460-4151655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:104-311
               
               
               Cow position:chr10:35893996-35893788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:104-314
               
               
               Cow position:chr10:34646535-34646331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:106-272
               
               
               Cow position:chr10:533445-533609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:106-282
               
               
               Cow position:chr10:58935253-58935082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:106-290
               
               
               Cow position:chr10:15424969-15425145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-297
               
               
               Cow position:chr10:10137783-10137967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:106-298
               
               
               Cow position:chr10:31803567-31803377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):168, 27

               
               
               Conread position:106-312
               
               
               Cow position:chr10:34660327-34660127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:106-318
               
               
               Cow position:chr10:28429582-28429379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):182, 27

               
               
               Conread position:107-322
               
               
               Cow position:chr10:25465980-25466190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:108-282
               
               
               Cow position:chr10:37707003-37707174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:109-311
               
               
               Cow position:chr10:67581200-67581401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:112-282
               
               
               Cow position:chr10:49060794-49060630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:113-301
               
               
               Cow position:chr10:43586365-43586178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:114-298
               
               
               Cow position:chr10:41676489-41676307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:114-322
               
               
               Cow position:chr10:68208168-68208379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:115-301
               
               
               Cow position:chr10:2535491-2535674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 139

               
               
               Conread position:117-314
               
               
               Cow position:chr10:24903062-24902865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:125-302
               
               
               Cow position:chr10:36947261-36947086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:127-298
               
               
               Cow position:chr10:40744048-40744216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:129-302
               
               
               Cow position:chr10:37426197-37426028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:130-307
               
               
               Cow position:chr10:6242574-6242401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:133-298
               
               
               Cow position:chr10:32080213-32080375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:133-311
               
               
               Cow position:chr10:2185288-2185465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):139, 71

               
               
               Conread position:135-320
               
               
               Cow position:chr10:47182627-47182448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:136-277
               
               
               Cow position:chr10:25822303-25822161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:137-289
               
               
               Cow position:chr10:5739334-5739183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:137-302
               
               
               Cow position:chr10:63628131-63628295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:139-314
               
               
               Cow position:chr10:35838824-35838995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):159, 71

               
               
               Conread position:142-276
               
               
               Cow position:chr10:25192927-25193060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:142-322
               
               
               Cow position:chr10:30746622-30746801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:143-311
               
               
               Cow position:chr10:50042558-50042719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):152, 10

               
               
               Conread position:144-297
               
               
               Cow position:chr10:17149829-17149983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:144-322
               
               
               Cow position:chr10:55600207-55600032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:145-298
               
               
               Cow position:chr10:10634169-10634322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr10:60697673-60697521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:145-307
               
               
               Cow position:chr10:46886107-46886267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):142, 64

               
               
               Conread position:145-311
               
               
               Cow position:chr10:2694915-2695076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:145-316
               
               
               Cow position:chr10:49253317-49253481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:145-318
               
               
               Cow position:chr10:13927685-13927857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr10:705045-704867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr10:24831133-24830950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr10:38995179-38995355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 147

               
               
               Conread position:146-322
               
               
               Cow position:chr10:23311076-23310906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:147-322
               
               
               Cow position:chr10:23128034-23127860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:148-297
               
               
               Cow position:chr10:38205757-38205608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-301
               
               
               Cow position:chr10:49634020-49634173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-322
               
               
               Cow position:chr10:49923420-49923246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:150-322
               
               
               Cow position:chr10:32503382-32503551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:151-306
               
               
               Cow position:chr10:62454413-62454258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):46, 56

               
               
               Conread position:152-302
               
               
               Cow position:chr10:7835629-7835486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:154-321
               
               
               Cow position:chr10:32928935-32929105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:157-302
               
               
               Cow position:chr10:2857010-2857154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:160-314
               
               
               Cow position:chr10:20447881-20448039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:161-310
               
               
               Cow position:chr10:27178462-27178605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:163-258
               
               
               Cow position:chr10:32404009-32403914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-304
               
               
               Cow position:chr10:11112592-11112735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:167-322
               
               
               Cow position:chr10:6516670-6516823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:169-311
               
               
               Cow position:chr10:46941504-46941361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:170-294
               
               
               Cow position:chr10:49862445-49862567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 39

               
               
               Conread position:171-322
               
               
               Cow position:chr10:59004324-59004481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:172-314
               
               
               Cow position:chr10:40998833-40998977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:173-297
               
               
               Cow position:chr10:59417257-59417129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:173-300
               
               
               Cow position:chr10:65904224-65904349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:173-306
               
               
               Cow position:chr10:43460074-43459944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr10:19679076-19679225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-293
               
               
               Cow position:chr10:55043663-55043543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:174-305
               
               
               Cow position:chr10:13158092-13158226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:175-314
               
               
               Cow position:chr10:17077757-17077621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:175-322
               
               
               Cow position:chr10:11047224-11047084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:178-301
               
               
               Cow position:chr10:37508164-37508043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:178-322
               
               
               Cow position:chr10:5784271-5784132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 53

               
               
               Conread position:178-322
               
               
               Cow position:chr10:53564137-53563998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:179-297
               
               
               Cow position:chr10:7089327-7089449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:181-314
               
               
               Cow position:chr10:14188624-14188492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:182-293
               
               
               Cow position:chr10:26103150-26103039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 96

               
               
               Conread position:183-322
               
               
               Cow position:chr10:59159231-59159372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:184-322
               
               
               Cow position:chr10:2985085-2984945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:187-306
               
               
               Cow position:chr10:27136696-27136577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-301
               
               
               Cow position:chr10:47429822-47429932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:188-322
               
               
               Cow position:chr10:37375755-37375625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-259
               
               
               Cow position:chr11:30912178-30911933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:1-280
               
               
               Cow position:chr11:36986771-36987041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:1-285
               
               
               Cow position:chr11:50778180-50778464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:1-286
               
               
               Cow position:chr11:38638930-38639208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:1-305
               
               
               Cow position:chr11:23232704-23232405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:1-308
               
               
               Cow position:chr11:377839-377523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:1-310
               
               
               Cow position:chr11:23138256-23137933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:1-311
               
               
               Cow position:chr11:20761659-20761965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:2-297
               
               
               Cow position:chr11:67600591-67600893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:2-300
               
               
               Cow position:chr11:29947120-29946803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:4-282
               
               
               Cow position:chr11:23128732-23128445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:5-318
               
               
               Cow position:chr11:4653165-4652845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:6-277
               
               
               Cow position:chr11:44036534-44036808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:6-300
               
               
               Cow position:chr11:11557979-11558283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-305
               
               
               Cow position:chr11:67747103-67747394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):100, 6

               
               
               Conread position:6-306
               
               
               Cow position:chr11:76114466-76114760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:6-311
               
               
               Cow position:chr11:17831406-17831100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):6, 130

               
               
               Conread position:7-322
               
               
               Cow position:chr11:65157593-65157277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:7-322
               
               
               Cow position:chr11:77750957-77750633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:8-251
               
               
               Cow position:chr11:24937481-24937728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):97, 5

               
               
               Conread position:9-257
               
               
               Cow position:chr11:67550555-67550309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:9-301
               
               
               Cow position:chr11:78381237-78380952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:9-311
               
               
               Cow position:chr11:73512614-73512319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:10-288
               
               
               Cow position:chr11:63469697-63469976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:10-311
               
               
               Cow position:chr11:43430635-43430333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:10-311
               
               
               Cow position:chr11:77128478-77128787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:10-320
               
               
               Cow position:chr11:84385820-84385511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 194

               
               
               Conread position:10-322
               
               
               Cow position:chr11:65762782-65762456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 141

               
               
               Conread position:11-272
               
               
               Cow position:chr11:56654368-56654639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:11-282
               
               
               Cow position:chr11:18572623-18572894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:11-291
               
               
               Cow position:chr11:73354232-73353956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:11-297
               
               
               Cow position:chr11:21728450-21728173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):182, 96

               
               
               Conread position:11-298
               
               
               Cow position:chr11:59872750-59873039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-304
               
               
               Cow position:chr11:8988409-8988116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:11-306
               
               
               Cow position:chr11:63847669-63847964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:11-316
               
               
               Cow position:chr11:30354888-30355187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):119, 54

               
               
               Conread position:12-301
               
               
               Cow position:chr11:83043540-83043250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:12-322
               
               
               Cow position:chr11:47772571-47772254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:13-311
               
               
               Cow position:chr11:62225805-62226118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:13-312
               
               
               Cow position:chr11:61958926-61958621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 126

               
               
               Conread position:13-322
               
               
               Cow position:chr11:36286518-36286836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:15-281
               
               
               Cow position:chr11:8840915-8840652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):227, 112

               
               
               Conread position:17-287
               
               
               Cow position:chr11:42358944-42359218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:17-312
               
               
               Cow position:chr11:56518485-56518187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 134

               
               
               Conread position:18-289
               
               
               Cow position:chr11:53553062-53553317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):263, 89

               
               
               Conread position:19-298
               
               
               Cow position:chr11:38577946-38577669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:19-300
               
               
               Cow position:chr11:20238499-20238788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:19-314
               
               
               Cow position:chr11:34113092-34113390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:19-315
               
               
               Cow position:chr11:46746456-46746767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:21-322
               
               
               Cow position:chr11:53778441-53778748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:24-302
               
               
               Cow position:chr11:64048250-64048516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:26-277
               
               
               Cow position:chr11:55494513-55494768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:26-311
               
               
               Cow position:chr11:50072784-50073056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:26-320
               
               
               Cow position:chr11:34121034-34121324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):82, 241

               
               
               Conread position:27-240
               
               
               Cow position:chr11:62490268-62490490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 42

               
               
               Conread position:27-270
               
               
               Cow position:chr11:13040326-13040090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:27-281
               
               
               Cow position:chr11:47544965-47545223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):81, 185

               
               
               Conread position:27-287
               
               
               Cow position:chr11:36799468-36799209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:27-316
               
               
               Cow position:chr11:83066329-83066614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):76, 126

               
               
               Conread position:27-320
               
               
               Cow position:chr11:38236078-38236379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:27-322
               
               
               Cow position:chr11:30708333-30708633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:27-322
               
               
               Cow position:chr11:61454697-61454374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 194

               
               
               Conread position:29-254
               
               
               Cow position:chr11:5075386-5075162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:29-276
               
               
               Cow position:chr11:16233099-16232847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:29-287
               
               
               Cow position:chr11:8148060-8147800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:29-287
               
               
               Cow position:chr11:58588184-58588443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 127

               
               
               Conread position:29-300
               
               
               Cow position:chr11:17278829-17278564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:29-306
               
               
               Cow position:chr11:35684658-35684384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:29-314
               
               
               Cow position:chr11:22978028-22977749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:29-318
               
               
               Cow position:chr11:58990346-58990619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:29-322
               
               
               Cow position:chr11:46748027-46747731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:29-322
               
               
               Cow position:chr11:48474539-48474839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:29-322
               
               
               Cow position:chr11:62620220-62620504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 86

               
               
               Conread position:29-322
               
               
               Cow position:chr11:66188484-66188191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:30-277
               
               
               Cow position:chr11:17660932-17661172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:30-302
               
               
               Cow position:chr11:26535616-26535900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:31-270
               
               
               Cow position:chr11:52983514-52983757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:31-314
               
               
               Cow position:chr11:45434925-45435205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:32-221
               
               
               Cow position:chr11:75355450-75355653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:32-224
               
               
               Cow position:chr11:18591592-18591398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:32-225
               
               
               Cow position:chr11:8339566-8339369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:32-226
               
               
               Cow position:chr11:42793133-42792935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:32-257
               
               
               Cow position:chr11:10620483-10620259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:32-272
               
               
               Cow position:chr11:5307-5547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:32-272
               
               
               Cow position:chr11:70619892-70620128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:32-274
               
               
               Cow position:chr11:64090244-64090011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):121, 76

               
               
               Conread position:32-276
               
               
               Cow position:chr11:61427446-61427680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 96

               
               
               Conread position:32-276
               
               
               Cow position:chr11:69810746-69810991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 114

               
               
               Conread position:32-277
               
               
               Cow position:chr11:35874152-35873914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):103, 76

               
               
               Conread position:32-277
               
               
               Cow position:chr11:47899119-47899357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-277
               
               
               Cow position:chr11:64044081-64044322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:32-281
               
               
               Cow position:chr11:31352730-31352459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:32-284
               
               
               Cow position:chr11:11232615-11232361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:32-289
               
               
               Cow position:chr11:16843163-16842886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:32-293
               
               
               Cow position:chr11:9270888-9270622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 125

               
               
               Conread position:32-293
               
               
               Cow position:chr11:19500940-19500687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:32-294
               
               
               Cow position:chr11:41023-41285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 57

               
               
               Conread position:32-294
               
               
               Cow position:chr11:27746764-27747030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:32-294
               
               
               Cow position:chr11:42296778-42296514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-295
               
               
               Cow position:chr11:44636918-44636648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:32-295
               
               
               Cow position:chr11:62155464-62155745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 212

               
               
               Conread position:32-296
               
               
               Cow position:chr11:20602067-20602334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 115

               
               
               Conread position:32-296
               
               
               Cow position:chr11:55761719-55761973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:32-297
               
               
               Cow position:chr11:50152976-50152704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:32-298
               
               
               Cow position:chr11:19247356-19247088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:32-298
               
               
               Cow position:chr11:40479015-40478743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:32-298
               
               
               Cow position:chr11:63482587-63482321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:32-299
               
               
               Cow position:chr11:45898213-45897940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 153

               
               
               Conread position:32-300
               
               
               Cow position:chr11:2907679-2907417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-300
               
               
               Cow position:chr11:30639106-30638838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:32-300
               
               
               Cow position:chr11:62239586-62239856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:32-300
               
               
               Cow position:chr11:80923484-80923211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:32-301
               
               
               Cow position:chr11:3393369-3393097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:32-301
               
               
               Cow position:chr11:15632717-15632455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:32-301
               
               
               Cow position:chr11:30830776-30830501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:32-301
               
               
               Cow position:chr11:40818800-40818515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:32-301
               
               
               Cow position:chr11:70086164-70086445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):26, 213

               
               
               Conread position:32-301
               
               
               Cow position:chr11:83230551-83230288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:32-302
               
               
               Cow position:chr11:11469795-11469537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr11:15338914-15339176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr11:16907203-16906937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):169, 32

               
               
               Conread position:32-302
               
               
               Cow position:chr11:27248332-27248604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:32-302
               
               
               Cow position:chr11:48295872-48296144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 116

               
               
               Conread position:32-302
               
               
               Cow position:chr11:52381034-52380756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:32-302
               
               
               Cow position:chr11:77319252-77319528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-303
               
               
               Cow position:chr11:23586477-23586753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-306
               
               
               Cow position:chr11:2083976-2084261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:32-306
               
               
               Cow position:chr11:41176110-41175827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 118

               
               
               Conread position:32-306
               
               
               Cow position:chr11:44642447-44642172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-308
               
               
               Cow position:chr11:44234193-44234473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:32-310
               
               
               Cow position:chr11:11125502-11125784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:32-311
               
               
               Cow position:chr11:952111-952390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):71, 45

               
               
               Conread position:32-311
               
               
               Cow position:chr11:1849322-1849048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):247, 69

               
               
               Conread position:32-311
               
               
               Cow position:chr11:3282891-3283148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:32-311
               
               
               Cow position:chr11:30954838-30955121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:32-311
               
               
               Cow position:chr11:33310809-33311100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:32-311
               
               
               Cow position:chr11:42044148-42043872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:32-311
               
               
               Cow position:chr11:48272037-48272323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr11:59702326-59702616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-311
               
               
               Cow position:chr11:73924720-73924438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:32-312
               
               
               Cow position:chr11:27764995-27765275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:32-314
               
               
               Cow position:chr11:13043306-13043020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-314
               
               
               Cow position:chr11:33348346-33348066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:32-314
               
               
               Cow position:chr11:48544276-48544564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:32-314
               
               
               Cow position:chr11:65607851-65607565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:32-314
               
               
               Cow position:chr11:74316552-74316834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:32-316
               
               
               Cow position:chr11:75874912-75874629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-320
               
               
               Cow position:chr11:27405226-27404945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:32-322
               
               
               Cow position:chr11:1380521-1380805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:32-322
               
               
               Cow position:chr11:1625378-1625094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:32-322
               
               
               Cow position:chr11:4207152-4207444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:32-322
               
               
               Cow position:chr11:7590033-7590319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr11:15016881-15017186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 266

               
               
               Conread position:32-322
               
               
               Cow position:chr11:18509179-18508901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:32-322
               
               
               Cow position:chr11:26144259-26143966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:32-322
               
               
               Cow position:chr11:30192012-30192309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:32-322
               
               
               Cow position:chr11:32436171-32436466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr11:33287113-33286827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:32-322
               
               
               Cow position:chr11:34145074-34144791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:32-322
               
               
               Cow position:chr11:35153985-35153693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr11:35580097-35580389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):68, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr11:45646755-45646465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr11:55333751-55334047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 76

               
               
               Conread position:32-322
               
               
               Cow position:chr11:72375846-72375538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:32-322
               
               
               Cow position:chr11:79728830-79728537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:33-220
               
               
               Cow position:chr11:6154255-6154440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:33-227
               
               
               Cow position:chr11:955206-955407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:33-274
               
               
               Cow position:chr11:82940781-82940539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:33-282
               
               
               Cow position:chr11:22499508-22499273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:33-288
               
               
               Cow position:chr11:10213721-10213468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:33-292
               
               
               Cow position:chr11:45631921-45631662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:33-293
               
               
               Cow position:chr11:2576063-2575799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:33-297
               
               
               Cow position:chr11:24601814-24602077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):208, 75

               
               
               Conread position:33-297
               
               
               Cow position:chr11:71390723-71390457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:33-301
               
               
               Cow position:chr11:3175531-3175786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:33-302
               
               
               Cow position:chr11:38874563-38874292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:33-306
               
               
               Cow position:chr11:11646910-11647203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:33-306
               
               
               Cow position:chr11:33341305-33341026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:33-307
               
               
               Cow position:chr11:80530206-80530477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:33-308
               
               
               Cow position:chr11:32693631-32693365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:33-309
               
               
               Cow position:chr11:70609626-70609917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:33-310
               
               
               Cow position:chr11:2092180-2092457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:33-311
               
               
               Cow position:chr11:36238624-36238901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:33-311
               
               
               Cow position:chr11:48649820-48650093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:33-314
               
               
               Cow position:chr11:259332-259048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:33-314
               
               
               Cow position:chr11:21844292-21844011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:33-314
               
               
               Cow position:chr11:41271982-41272265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 117

               
               
               Conread position:33-314
               
               
               Cow position:chr11:52297380-52297095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:33-314
               
               
               Cow position:chr11:55052727-55052995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:33-320
               
               
               Cow position:chr11:63909817-63909529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:33-322
               
               
               Cow position:chr11:34646432-34646723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:33-322
               
               
               Cow position:chr11:67804592-67804873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:34-265
               
               
               Cow position:chr11:82796444-82796212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):116, 92

               
               
               Conread position:34-277
               
               
               Cow position:chr11:13061388-13061146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:34-282
               
               
               Cow position:chr11:43360946-43360690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:34-287
               
               
               Cow position:chr11:30924991-30925253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:34-295
               
               
               Cow position:chr11:29960147-29960402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):245, 34

               
               
               Conread position:34-296
               
               
               Cow position:chr11:4663204-4662940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:34-296
               
               
               Cow position:chr11:17083456-17083203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:34-301
               
               
               Cow position:chr11:69119144-69119407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 55

               
               
               Conread position:34-305
               
               
               Cow position:chr11:8525269-8524997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:34-307
               
               
               Cow position:chr11:1071250-1070972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:34-308
               
               
               Cow position:chr11:26845740-26845475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:34-314
               
               
               Cow position:chr11:68206997-68206718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:34-316
               
               
               Cow position:chr11:34962902-34963201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 189

               
               
               Conread position:34-322
               
               
               Cow position:chr11:36112263-36112546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:34-322
               
               
               Cow position:chr11:77745414-77745121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:35-207
               
               
               Cow position:chr11:16251404-16251225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:35-276
               
               
               Cow position:chr11:39115336-39115583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:35-276
               
               
               Cow position:chr11:49934893-49934643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:35-276
               
               
               Cow position:chr11:63434213-63433972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 217

               
               
               Conread position:35-276
               
               
               Cow position:chr11:81162590-81162345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:35-277
               
               
               Cow position:chr11:80820156-80819916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:35-282
               
               
               Cow position:chr11:76606526-76606766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:35-294
               
               
               Cow position:chr11:43897983-43898244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:35-296
               
               
               Cow position:chr11:51729131-51729394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:35-297
               
               
               Cow position:chr11:17227803-17227536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):72, 183

               
               
               Conread position:35-298
               
               
               Cow position:chr11:39499201-39499467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 54

               
               
               Conread position:35-298
               
               
               Cow position:chr11:62151042-62150784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:35-301
               
               
               Cow position:chr11:48496744-48496480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:35-313
               
               
               Cow position:chr11:36182529-36182819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:35-322
               
               
               Cow position:chr11:17493321-17493612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:35-322
               
               
               Cow position:chr11:46580198-46580485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:36-284
               
               
               Cow position:chr11:44222734-44222982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:36-294
               
               
               Cow position:chr11:2917742-2917481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:36-294
               
               
               Cow position:chr11:49152795-49153054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:36-297
               
               
               Cow position:chr11:2925444-2925192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 63

               
               
               Conread position:36-305
               
               
               Cow position:chr11:25386907-25387186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:36-314
               
               
               Cow position:chr11:14470213-14470489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:36-322
               
               
               Cow position:chr11:13592580-13592867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:37-312
               
               
               Cow position:chr11:63917622-63917353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:37-314
               
               
               Cow position:chr11:35213316-35213041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:37-322
               
               
               Cow position:chr11:5201805-5201517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:37-322
               
               
               Cow position:chr11:56187464-56187735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:37-322
               
               
               Cow position:chr11:63435362-63435650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 177

               
               
               Conread position:40-297
               
               
               Cow position:chr11:62663373-62663126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:42-277
               
               
               Cow position:chr11:18851768-18851996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:42-301
               
               
               Cow position:chr11:70250775-70251031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:42-306
               
               
               Cow position:chr11:44031852-44032131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:42-311
               
               
               Cow position:chr11:40573484-40573213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):6, 103

               
               
               Conread position:43-282
               
               
               Cow position:chr11:86720561-86720324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:43-310
               
               
               Cow position:chr11:6633562-6633832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:43-310
               
               
               Cow position:chr11:28643935-28644209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:46-297
               
               
               Cow position:chr11:33825037-33824797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:46-301
               
               
               Cow position:chr11:23407315-23407577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:48-311
               
               
               Cow position:chr11:69075764-69076032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:51-276
               
               
               Cow position:chr11:65767056-65767287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:53-299
               
               
               Cow position:chr11:21497382-21497633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:53-301
               
               
               Cow position:chr11:67615382-67615132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:53-313
               
               
               Cow position:chr11:69977838-69978095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:56-308
               
               
               Cow position:chr11:261399-261148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:57-276
               
               
               Cow position:chr11:80537351-80537574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:57-301
               
               
               Cow position:chr11:39462494-39462736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:57-302
               
               
               Cow position:chr11:62788993-62789243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:64-314
               
               
               Cow position:chr11:67615057-67614797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 225

               
               
               Conread position:66-305
               
               
               Cow position:chr11:41293945-41293701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:67-306
               
               
               Cow position:chr11:40608722-40608476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:71-322
               
               
               Cow position:chr11:32398525-32398769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:82-287
               
               
               Cow position:chr11:24599494-24599290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:84-302
               
               
               Cow position:chr11:31227860-31228074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 60

               
               
               Conread position:85-318
               
               
               Cow position:chr11:64351894-64351660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:86-305
               
               
               Cow position:chr11:42066754-42066981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:89-296
               
               
               Cow position:chr11:32691067-32690863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):70, 46

               
               
               Conread position:90-308
               
               
               Cow position:chr11:27565239-27565450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:93-306
               
               
               Cow position:chr11:49872978-49872771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:93-322
               
               
               Cow position:chr11:8669916-8670145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:94-276
               
               
               Cow position:chr11:83032591-83032768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:94-277
               
               
               Cow position:chr11:249575-249393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-282
               
               
               Cow position:chr11:6194115-6194300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):175, 28

               
               
               Conread position:94-284
               
               
               Cow position:chr11:8428420-8428607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:94-292
               
               
               Cow position:chr11:41603780-41603583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr11:70978821-70978621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):187, 43

               
               
               Conread position:94-302
               
               
               Cow position:chr11:17676461-17676259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr11:30493908-30494107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr11:52690612-52690408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:94-302
               
               
               Cow position:chr11:81168122-81167915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:94-303
               
               
               Cow position:chr11:35803043-35803251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):141, 39

               
               
               Conread position:94-304
               
               
               Cow position:chr11:14466579-14466372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):194, 48

               
               
               Conread position:94-306
               
               
               Cow position:chr11:375364-375577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:94-308
               
               
               Cow position:chr11:64406135-64406351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):143, 39

               
               
               Conread position:94-308
               
               
               Cow position:chr11:72292450-72292670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 144

               
               
               Conread position:94-314
               
               
               Cow position:chr11:35536497-35536712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-314
               
               
               Cow position:chr11:70756391-70756602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:94-320
               
               
               Cow position:chr11:19592081-19591867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr11:63999180-63998962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr11:80413102-80412881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:94-322
               
               
               Cow position:chr11:80564202-80564425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):199, 47

               
               
               Conread position:96-322
               
               
               Cow position:chr11:35926995-35926780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:100-306
               
               
               Cow position:chr11:17721889-17721685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:101-253
               
               
               Cow position:chr11:54218633-54218779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:101-302
               
               
               Cow position:chr11:46922982-46922771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:101-302
               
               
               Cow position:chr11:62813035-62812836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:101-305
               
               
               Cow position:chr11:18910962-18910767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:101-314
               
               
               Cow position:chr11:67312687-67312908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):51, 114

               
               
               Conread position:102-306
               
               
               Cow position:chr11:18587690-18587478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:103-311
               
               
               Cow position:chr11:70825869-70826071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:104-256
               
               
               Cow position:chr11:36914801-36914659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:104-268
               
               
               Cow position:chr11:82740427-82740589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:104-271
               
               
               Cow position:chr11:84490570-84490416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):165, 22

               
               
               Conread position:104-277
               
               
               Cow position:chr11:16342311-16342140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:104-277
               
               
               Cow position:chr11:28168505-28168334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:104-283
               
               
               Cow position:chr11:53279795-53279619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):166, 33

               
               
               Conread position:104-287
               
               
               Cow position:chr11:19586374-19586558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:104-300
               
               
               Cow position:chr11:39060680-39060491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:104-302
               
               
               Cow position:chr11:17036610-17036416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-305
               
               
               Cow position:chr11:48085835-48086035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):112, 26

               
               
               Conread position:104-308
               
               
               Cow position:chr11:79019140-79018939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:104-314
               
               
               Cow position:chr11:33409341-33409135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):184, 29

               
               
               Conread position:104-322
               
               
               Cow position:chr11:8437770-8437559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:105-259
               
               
               Cow position:chr11:69392482-69392633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:105-302
               
               
               Cow position:chr11:31410963-31410764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:105-314
               
               
               Cow position:chr11:42160140-42159932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:106-278
               
               
               Cow position:chr11:69652863-69652692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:106-294
               
               
               Cow position:chr11:84890799-84890612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:106-306
               
               
               Cow position:chr11:41313735-41313537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:108-297
               
               
               Cow position:chr11:30867104-30867292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:108-314
               
               
               Cow position:chr11:4637250-4637047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:110-295
               
               
               Cow position:chr11:64104922-64105104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:110-311
               
               
               Cow position:chr11:83033311-83033117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:113-278
               
               
               Cow position:chr11:30483845-30484009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:114-281
               
               
               Cow position:chr11:3790764-3790935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:115-311
               
               
               Cow position:chr11:10363458-10363260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:118-311
               
               
               Cow position:chr11:29699768-29699576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:121-302
               
               
               Cow position:chr11:25119997-25119818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):167, 12

               
               
               Conread position:122-322
               
               
               Cow position:chr11:1932556-1932360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:124-311
               
               
               Cow position:chr11:22747390-22747207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:125-320
               
               
               Cow position:chr11:11533990-11533802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:129-321
               
               
               Cow position:chr11:48248275-48248081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):102, 109

               
               
               Conread position:132-297
               
               
               Cow position:chr11:18447549-18447384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 150

               
               
               Conread position:132-302
               
               
               Cow position:chr11:11523524-11523341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:133-285
               
               
               Cow position:chr11:36329090-36328938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:133-301
               
               
               Cow position:chr11:72884649-72884484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:134-297
               
               
               Cow position:chr11:80639604-80639438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:134-321
               
               
               Cow position:chr11:20205906-20205718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:135-314
               
               
               Cow position:chr11:37425194-37425026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:135-322
               
               
               Cow position:chr11:62889946-62889764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:136-306
               
               
               Cow position:chr11:54334275-54334446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:138-302
               
               
               Cow position:chr11:38211595-38211757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:138-311
               
               
               Cow position:chr11:19606527-19606701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:138-311
               
               
               Cow position:chr11:56290462-56290634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:141-275
               
               
               Cow position:chr11:18914978-18915113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:142-277
               
               
               Cow position:chr11:16801998-16801868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:142-296
               
               
               Cow position:chr11:34413386-34413232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-302
               
               
               Cow position:chr11:34692807-34692967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-310
               
               
               Cow position:chr11:4225051-4225212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:142-312
               
               
               Cow position:chr11:17321601-17321780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):104, 83

               
               
               Conread position:143-295
               
               
               Cow position:chr11:25668962-25669111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:143-297
               
               
               Cow position:chr11:82731043-82730889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:143-320
               
               
               Cow position:chr11:35109583-35109411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:143-322
               
               
               Cow position:chr11:29786543-29786365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 11

               
               
               Conread position:144-316
               
               
               Cow position:chr11:65826795-65826621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:145-289
               
               
               Cow position:chr11:46952904-46953048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-301
               
               
               Cow position:chr11:897630-897785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr11:63866702-63866545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):112, 38

               
               
               Conread position:145-305
               
               
               Cow position:chr11:30964303-30964460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):113, 21

               
               
               Conread position:145-322
               
               
               Cow position:chr11:15382546-15382367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:146-277
               
               
               Cow position:chr11:76822128-76822000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:147-291
               
               
               Cow position:chr11:4430174-4430034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:147-322
               
               
               Cow position:chr11:21885792-21885961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:152-285
               
               
               Cow position:chr11:3248745-3248610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:154-300
               
               
               Cow position:chr11:58938779-58938633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:154-302
               
               
               Cow position:chr11:53717841-53717692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:154-311
               
               
               Cow position:chr11:58173591-58173747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:155-320
               
               
               Cow position:chr11:3896732-3896572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:155-322
               
               
               Cow position:chr11:46427441-46427276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):120, 135

               
               
               Conread position:156-302
               
               
               Cow position:chr11:30895036-30894887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:156-305
               
               
               Cow position:chr11:65803903-65803753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:157-298
               
               
               Cow position:chr11:49255373-49255508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:158-310
               
               
               Cow position:chr11:71021970-71022124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr11:17638560-17638396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:166-301
               
               
               Cow position:chr11:22027411-22027277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:166-301
               
               
               Cow position:chr11:63165669-63165532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:166-313
               
               
               Cow position:chr11:35669974-35669830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:167-322
               
               
               Cow position:chr11:2900742-2900585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:168-298
               
               
               Cow position:chr11:56114918-56115050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:170-297
               
               
               Cow position:chr11:905401-905276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:173-311
               
               
               Cow position:chr11:17195846-17195707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:173-314
               
               
               Cow position:chr11:48315412-48315271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-315
               
               
               Cow position:chr11:30986628-30986765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:175-322
               
               
               Cow position:chr11:70741129-70741276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):98, 110

               
               
               Conread position:179-292
               
               
               Cow position:chr11:34238580-34238469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:180-297
               
               
               Cow position:chr11:22884405-22884521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:182-287
               
               
               Cow position:chr11:25320179-25320284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-322
               
               
               Cow position:chr11:2484798-2484667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:188-322
               
               
               Cow position:chr11:80008068-80007934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 66

               
               
               Conread position:196-310
               
               
               Cow position:chr11:31326013-31326128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:199-322
               
               
               Cow position:chr11:36104323-36104443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:201-316
               
               
               Cow position:chr11:23278952-23278837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:202-322
               
               
               Cow position:chr11:11483324-11483449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:203-305
               
               
               Cow position:chr11:5200564-5200462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-298
               
               
               Cow position:chr12:31532614-31532315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:2-282
               
               
               Cow position:chr12:47803941-47804229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:2-302
               
               
               Cow position:chr12:2813018-2813323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 8

               
               
               Conread position:2-311
               
               
               Cow position:chr12:34148557-34148254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 23

               
               
               Conread position:6-266
               
               
               Cow position:chr12:731148-730883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 139

               
               
               Conread position:6-301
               
               
               Cow position:chr12:17879504-17879210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 6

               
               
               Conread position:6-304
               
               
               Cow position:chr12:6410941-6410641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:6-316
               
               
               Cow position:chr12:31228365-31228679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:7-276
               
               
               Cow position:chr12:29484098-29483819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:7-309
               
               
               Cow position:chr12:30753514-30753817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:7-311
               
               
               Cow position:chr12:34473829-34473523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:8-314
               
               
               Cow position:chr12:33851155-33851462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:9-277
               
               
               Cow position:chr12:6489188-6488925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:10-286
               
               
               Cow position:chr12:19691441-19691157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):18, 136

               
               
               Conread position:10-289
               
               
               Cow position:chr12:46333151-46333424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:10-308
               
               
               Cow position:chr12:25320718-25321013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:10-311
               
               
               Cow position:chr12:25444726-25445015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:10-322
               
               
               Cow position:chr12:4341925-4341629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):291, 13

               
               
               Conread position:10-322
               
               
               Cow position:chr12:42162834-42163159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 215

               
               
               Conread position:11-297
               
               
               Cow position:chr12:30194505-30194789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:11-301
               
               
               Cow position:chr12:40910490-40910194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:11-311
               
               
               Cow position:chr12:29995661-29995363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:11-313
               
               
               Cow position:chr12:8943421-8943116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr12:5635648-5635346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:18-308
               
               
               Cow position:chr12:17774604-17774891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:18-316
               
               
               Cow position:chr12:34466207-34465897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:18-322
               
               
               Cow position:chr12:30919226-30919540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:19-284
               
               
               Cow position:chr12:30662143-30661875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:19-296
               
               
               Cow position:chr12:5714434-5714716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:19-311
               
               
               Cow position:chr12:31959700-31959981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:27-192
               
               
               Cow position:chr12:29411676-29411506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:27-247
               
               
               Cow position:chr12:28471452-28471685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:27-295
               
               
               Cow position:chr12:34161230-34161498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 159

               
               
               Conread position:27-310
               
               
               Cow position:chr12:7000791-7000504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:27-322
               
               
               Cow position:chr12:19502602-19502312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 102

               
               
               Conread position:28-322
               
               
               Cow position:chr12:15089329-15089622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:28-322
               
               
               Cow position:chr12:37993908-37993615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 53

               
               
               Conread position:28-322
               
               
               Cow position:chr12:42685132-42684833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):80, 122

               
               
               Conread position:29-272
               
               
               Cow position:chr12:8869061-8868819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:29-276
               
               
               Cow position:chr12:31429754-31429504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:29-284
               
               
               Cow position:chr12:30438061-30438313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:29-295
               
               
               Cow position:chr12:44517920-44517652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:29-302
               
               
               Cow position:chr12:27803230-27802956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:29-305
               
               
               Cow position:chr12:33323679-33323399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 120

               
               
               Conread position:29-309
               
               
               Cow position:chr12:4008461-4008183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 106

               
               
               Conread position:30-276
               
               
               Cow position:chr12:5905874-5906123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:32-192
               
               
               Cow position:chr12:4116312-4116472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:32-235
               
               
               Cow position:chr12:38454736-38454932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:32-246
               
               
               Cow position:chr12:18550701-18550918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:32-259
               
               
               Cow position:chr12:34673521-34673290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-272
               
               
               Cow position:chr12:18964108-18963865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:32-276
               
               
               Cow position:chr12:33457964-33458214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-282
               
               
               Cow position:chr12:30210301-30210556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:32-286
               
               
               Cow position:chr12:39465401-39465656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-287
               
               
               Cow position:chr12:17001081-17001336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):76, 91

               
               
               Conread position:32-291
               
               
               Cow position:chr12:41083888-41084137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-294
               
               
               Cow position:chr12:30605333-30605081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):96, 57

               
               
               Conread position:32-295
               
               
               Cow position:chr12:6210338-6210071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 63

               
               
               Conread position:32-296
               
               
               Cow position:chr12:17031434-17031702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:32-296
               
               
               Cow position:chr12:18123505-18123756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:32-297
               
               
               Cow position:chr12:7977861-7978125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 166

               
               
               Conread position:32-297
               
               
               Cow position:chr12:12304210-12304466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 112

               
               
               Conread position:32-297
               
               
               Cow position:chr12:17881681-17881949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:32-297
               
               
               Cow position:chr12:29969399-29969670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 49

               
               
               Conread position:32-297
               
               
               Cow position:chr12:45965433-45965170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:32-298
               
               
               Cow position:chr12:38774421-38774151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:32-299
               
               
               Cow position:chr12:25452625-25452357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:32-301
               
               
               Cow position:chr12:25561191-25561461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:32-302
               
               
               Cow position:chr12:9143216-9143481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 69

               
               
               Conread position:32-302
               
               
               Cow position:chr12:30745535-30745810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):57, 166

               
               
               Conread position:32-302
               
               
               Cow position:chr12:35378022-35378294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:32-302
               
               
               Cow position:chr12:36544830-36544549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-302
               
               
               Cow position:chr12:41473910-41474182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-306
               
               
               Cow position:chr12:4768745-4769021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:32-306
               
               
               Cow position:chr12:30590599-30590863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:32-306
               
               
               Cow position:chr12:35368460-35368739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:32-306
               
               
               Cow position:chr12:42966819-42967091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:32-308
               
               
               Cow position:chr12:3510386-3510652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):168, 75

               
               
               Conread position:32-308
               
               
               Cow position:chr12:27037626-27037351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:32-309
               
               
               Cow position:chr12:18020677-18020957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:32-309
               
               
               Cow position:chr12:45820540-45820266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:32-310
               
               
               Cow position:chr12:6720142-6720428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-311
               
               
               Cow position:chr12:15530877-15531157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):76, 202

               
               
               Conread position:32-311
               
               
               Cow position:chr12:19507451-19507737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:32-311
               
               
               Cow position:chr12:29770754-29770476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-311
               
               
               Cow position:chr12:32714863-32715148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:32-314
               
               
               Cow position:chr12:18518485-18518778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:32-314
               
               
               Cow position:chr12:30805673-30805963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:32-315
               
               
               Cow position:chr12:42181318-42181021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:32-321
               
               
               Cow position:chr12:6241132-6241429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:32-322
               
               
               Cow position:chr12:18388463-18388180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr12:18421104-18420819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr12:23574589-23574876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:32-322
               
               
               Cow position:chr12:24662937-24663226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:32-322
               
               
               Cow position:chr12:27563564-27563270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:32-322
               
               
               Cow position:chr12:33976020-33976309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:32-322
               
               
               Cow position:chr12:39486252-39486534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):253, 98

               
               
               Conread position:32-322
               
               
               Cow position:chr12:41159411-41159696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):31, 91

               
               
               Conread position:32-322
               
               
               Cow position:chr12:44622173-44622466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:33-224
               
               
               Cow position:chr12:6164205-6164007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:33-281
               
               
               Cow position:chr12:23855655-23855904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:33-282
               
               
               Cow position:chr12:24211240-24211480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:33-301
               
               
               Cow position:chr12:7884850-7884589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:33-301
               
               
               Cow position:chr12:11836053-11836326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 127

               
               
               Conread position:33-302
               
               
               Cow position:chr12:25805290-25805040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:33-302
               
               
               Cow position:chr12:25917443-25917182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:33-310
               
               
               Cow position:chr12:6485387-6485111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:33-322
               
               
               Cow position:chr12:15429775-15429488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:34-277
               
               
               Cow position:chr12:43942298-43942549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:35-277
               
               
               Cow position:chr12:30170490-30170736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):73, 166

               
               
               Conread position:35-293
               
               
               Cow position:chr12:18577668-18577922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 99

               
               
               Conread position:35-302
               
               
               Cow position:chr12:15122142-15122419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 117

               
               
               Conread position:35-302
               
               
               Cow position:chr12:20777100-20776835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:35-320
               
               
               Cow position:chr12:32169362-32169651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:36-297
               
               
               Cow position:chr12:44595987-44595722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:36-298
               
               
               Cow position:chr12:11056703-11056965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 107

               
               
               Conread position:36-302
               
               
               Cow position:chr12:37770699-37770961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:36-322
               
               
               Cow position:chr12:17080083-17080372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:36-322
               
               
               Cow position:chr12:42879518-42879805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:37-274
               
               
               Cow position:chr12:25110612-25110376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:37-316
               
               
               Cow position:chr12:15703673-15703394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 176

               
               
               Conread position:39-299
               
               
               Cow position:chr12:26223158-26222899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:45-272
               
               
               Cow position:chr12:42784139-42784375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 105

               
               
               Conread position:46-322
               
               
               Cow position:chr12:20479492-20479231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:47-314
               
               
               Cow position:chr12:35669639-35669360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:47-322
               
               
               Cow position:chr12:22485647-22485915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:50-228
               
               
               Cow position:chr12:4790731-4790556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:51-303
               
               
               Cow position:chr12:41216046-41215792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:52-305
               
               
               Cow position:chr12:37170104-37169851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:55-295
               
               
               Cow position:chr12:24032343-24032586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:55-322
               
               
               Cow position:chr12:22285277-22285015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 103

               
               
               Conread position:57-269
               
               
               Cow position:chr12:11090271-11090476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:64-322
               
               
               Cow position:chr12:19400959-19400710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:65-301
               
               
               Cow position:chr12:26575737-26575987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 220

               
               
               Conread position:65-314
               
               
               Cow position:chr12:4866674-4866920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:67-295
               
               
               Cow position:chr12:24116510-24116278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 84

               
               
               Conread position:67-302
               
               
               Cow position:chr12:9767020-9766784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:67-322
               
               
               Cow position:chr12:10942147-10942400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):207, 73

               
               
               Conread position:67-322
               
               
               Cow position:chr12:12300775-12301033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:69-298
               
               
               Cow position:chr12:44203127-44202898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:74-301
               
               
               Cow position:chr12:48415648-48415424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:79-283
               
               
               Cow position:chr12:47194148-47193950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:89-296
               
               
               Cow position:chr12:19261074-19261282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:92-276
               
               
               Cow position:chr12:6469176-6468993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:93-298
               
               
               Cow position:chr12:37514395-37514191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):180, 43

               
               
               Conread position:93-301
               
               
               Cow position:chr12:18583105-18582901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-269
               
               
               Cow position:chr12:3092684-3092520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr12:17269688-17269894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr12:46120941-46120739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:94-307
               
               
               Cow position:chr12:19258168-19258374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):174, 47

               
               
               Conread position:94-311
               
               
               Cow position:chr12:7110089-7110299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):141, 47

               
               
               Conread position:94-314
               
               
               Cow position:chr12:26217937-26217720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:94-322
               
               
               Cow position:chr12:13988260-13988480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr12:24152226-24152448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:94-322
               
               
               Cow position:chr12:42254556-42254775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:95-301
               
               
               Cow position:chr12:7902913-7902710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:95-302
               
               
               Cow position:chr12:3371654-3371453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:95-306
               
               
               Cow position:chr12:18523453-18523666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:95-322
               
               
               Cow position:chr12:31269040-31269266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:96-322
               
               
               Cow position:chr12:26750068-26749843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 195

               
               
               Conread position:104-258
               
               
               Cow position:chr12:6235182-6235338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:104-306
               
               
               Cow position:chr12:11659824-11660018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-311
               
               
               Cow position:chr12:33319769-33319566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:104-320
               
               
               Cow position:chr12:16670164-16670373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:106-286
               
               
               Cow position:chr12:1333129-1333306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:106-306
               
               
               Cow position:chr12:5609610-5609415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:106-321
               
               
               Cow position:chr12:35771118-35770915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:107-322
               
               
               Cow position:chr12:24043266-24043050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:113-311
               
               
               Cow position:chr12:30819149-30819343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:114-301
               
               
               Cow position:chr12:26777283-26777101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:115-294
               
               
               Cow position:chr12:5554426-5554249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:125-275
               
               
               Cow position:chr12:24273442-24273291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:125-302
               
               
               Cow position:chr12:33948821-33948995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:132-296
               
               
               Cow position:chr12:45092370-45092533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:132-303
               
               
               Cow position:chr12:17252275-17252107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:133-301
               
               
               Cow position:chr12:5839736-5839563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:134-294
               
               
               Cow position:chr12:4793122-4793282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:135-295
               
               
               Cow position:chr12:6484067-6484223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:140-303
               
               
               Cow position:chr12:15260694-15260855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:142-306
               
               
               Cow position:chr12:44901194-44901355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:143-301
               
               
               Cow position:chr12:29057323-29057483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:143-322
               
               
               Cow position:chr12:12232817-12232987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:144-322
               
               
               Cow position:chr12:36261624-36261800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:145-276
               
               
               Cow position:chr12:15641172-15641040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:145-281
               
               
               Cow position:chr12:24167008-24166872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr12:4797236-4797392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr12:19274461-19274305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):134, 64

               
               
               Conread position:145-302
               
               
               Cow position:chr12:46464131-46463977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:145-315
               
               
               Cow position:chr12:4594437-4594611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:146-300
               
               
               Cow position:chr12:26151523-26151369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):129, 60

               
               
               Conread position:146-300
               
               
               Cow position:chr12:45039044-45039201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:147-301
               
               
               Cow position:chr12:27357326-27357477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:154-302
               
               
               Cow position:chr12:7920187-7920337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:155-320
               
               
               Cow position:chr12:34195761-34195600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):153, 54

               
               
               Conread position:162-302
               
               
               Cow position:chr12:6139628-6139484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:163-301
               
               
               Cow position:chr12:2734954-2734816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-310
               
               
               Cow position:chr12:24437681-24437534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-264
               
               
               Cow position:chr12:19513068-19512970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-297
               
               
               Cow position:chr12:48578800-48578930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:166-314
               
               
               Cow position:chr12:14986706-14986853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:167-306
               
               
               Cow position:chr12:1766870-1767006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:167-311
               
               
               Cow position:chr12:27572282-27572138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:169-302
               
               
               Cow position:chr12:29731274-29731405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:170-322
               
               
               Cow position:chr12:2964011-2964152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:172-276
               
               
               Cow position:chr12:19371927-19371823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-302
               
               
               Cow position:chr12:29180636-29180768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:173-311
               
               
               Cow position:chr12:23696196-23696059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr12:6480604-6480748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr12:20355177-20355329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:174-302
               
               
               Cow position:chr12:23714640-23714768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-320
               
               
               Cow position:chr12:29316496-29316350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:178-298
               
               
               Cow position:chr12:16434903-16434785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:178-306
               
               
               Cow position:chr12:44861291-44861163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:186-310
               
               
               Cow position:chr12:7514791-7514914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:188-301
               
               
               Cow position:chr12:25528581-25528468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-322
               
               
               Cow position:chr12:4014444-4014316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:198-322
               
               
               Cow position:chr12:24186501-24186370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:200-322
               
               
               Cow position:chr12:583519-583398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:238-322
               
               
               Cow position:chr12:17331897-17331978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:77
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-277
               
               
               Cow position:chr13:9593668-9593385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:1-302
               
               
               Cow position:chr13:18166891-18166584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:1-314
               
               
               Cow position:chr13:23667416-23667095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:1-314
               
               
               Cow position:chr13:60375329-60375646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 149

               
               
               Conread position:1-316
               
               
               Cow position:chr13:40722547-40722866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:2-276
               
               
               Cow position:chr13:15903169-15902904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):104, 10

               
               
               Conread position:6-246
               
               
               Cow position:chr13:25062566-25062323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):20, 142

               
               
               Conread position:6-258
               
               
               Cow position:chr13:25531632-25531892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-275
               
               
               Cow position:chr13:47356787-47356533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 31

               
               
               Conread position:6-297
               
               
               Cow position:chr13:47964043-47964320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 73

               
               
               Conread position:6-302
               
               
               Cow position:chr13:20820684-20820983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):102, 26

               
               
               Conread position:6-306
               
               
               Cow position:chr13:17158715-17159028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 154

               
               
               Conread position:6-311
               
               
               Cow position:chr13:49503383-49503691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 6

               
               
               Conread position:6-314
               
               
               Cow position:chr13:37818593-37818909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-322
               
               
               Cow position:chr13:52894300-52893987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:8-258
               
               
               Cow position:chr13:8524470-8524720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 5

               
               
               Conread position:9-296
               
               
               Cow position:chr13:971741-972037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):20, 210

               
               
               Conread position:9-322
               
               
               Cow position:chr13:35526060-35526357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:10-282
               
               
               Cow position:chr13:23270061-23270331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-283
               
               
               Cow position:chr13:5758193-5758470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-295
               
               
               Cow position:chr13:56686584-56686296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-297
               
               
               Cow position:chr13:28683511-28683221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-301
               
               
               Cow position:chr13:46112119-46111822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:10-311
               
               
               Cow position:chr13:18172484-18172177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:10-314
               
               
               Cow position:chr13:14063372-14063679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:11-228
               
               
               Cow position:chr13:24376637-24376421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-316
               
               
               Cow position:chr13:19188450-19188141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:15-314
               
               
               Cow position:chr13:42200764-42200462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 67

               
               
               Conread position:18-260
               
               
               Cow position:chr13:36352823-36353061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:19-310
               
               
               Cow position:chr13:35659894-35659609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:19-314
               
               
               Cow position:chr13:6974303-6974004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:20-314
               
               
               Cow position:chr13:18058106-18058405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 256

               
               
               Conread position:26-295
               
               
               Cow position:chr13:58763497-58763756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):7, 116

               
               
               Conread position:26-306
               
               
               Cow position:chr13:16014949-16014661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:26-308
               
               
               Cow position:chr13:56155025-56155303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):82, 108

               
               
               Conread position:27-257
               
               
               Cow position:chr13:18243996-18243761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:27-276
               
               
               Cow position:chr13:11820725-11820479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:27-296
               
               
               Cow position:chr13:15192757-15193028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:27-297
               
               
               Cow position:chr13:20473558-20473822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:27-314
               
               
               Cow position:chr13:5263156-5263437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:27-322
               
               
               Cow position:chr13:45353179-45352869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 257

               
               
               Conread position:28-306
               
               
               Cow position:chr13:20679480-20679189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):47, 121

               
               
               Conread position:28-322
               
               
               Cow position:chr13:51528315-51528604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:29-300
               
               
               Cow position:chr13:24754012-24753743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:29-306
               
               
               Cow position:chr13:17622412-17622140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:29-312
               
               
               Cow position:chr13:20706075-20706361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:29-322
               
               
               Cow position:chr13:6663620-6663914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:30-275
               
               
               Cow position:chr13:22085614-22085865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:30-294
               
               
               Cow position:chr13:24586171-24585908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:30-308
               
               
               Cow position:chr13:5082780-5082499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:30-311
               
               
               Cow position:chr13:23166966-23167256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:31-298
               
               
               Cow position:chr13:18852209-18851941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:31-322
               
               
               Cow position:chr13:19223774-19223493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:32-188
               
               
               Cow position:chr13:13265935-13265774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:32-207
               
               
               Cow position:chr13:20440461-20440632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:32-241
               
               
               Cow position:chr13:61166330-61166535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:32-252
               
               
               Cow position:chr13:12618986-12619212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:32-252
               
               
               Cow position:chr13:15234042-15233830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:32-258
               
               
               Cow position:chr13:48375517-48375735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):101, 76

               
               
               Conread position:32-269
               
               
               Cow position:chr13:8838866-8839103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:32-272
               
               
               Cow position:chr13:47007602-47007834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):54, 88

               
               
               Conread position:32-274
               
               
               Cow position:chr13:34263241-34263488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:32-277
               
               
               Cow position:chr13:8374644-8374894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-277
               
               
               Cow position:chr13:15144244-15144486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:32-278
               
               
               Cow position:chr13:12682417-12682663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:32-282
               
               
               Cow position:chr13:31813999-31813749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-283
               
               
               Cow position:chr13:6060882-6061134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-283
               
               
               Cow position:chr13:17966081-17966336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):76, 243

               
               
               Conread position:32-285
               
               
               Cow position:chr13:15166947-15166689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):72, 174

               
               
               Conread position:32-287
               
               
               Cow position:chr13:11460749-11460502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:32-288
               
               
               Cow position:chr13:62518204-62518464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:32-291
               
               
               Cow position:chr13:10928866-10929123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:32-291
               
               
               Cow position:chr13:13501495-13501752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:32-292
               
               
               Cow position:chr13:13176778-13176513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:32-293
               
               
               Cow position:chr13:53566723-53566464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:32-294
               
               
               Cow position:chr13:20563124-20562853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:32-297
               
               
               Cow position:chr13:37484146-37484422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 271

               
               
               Conread position:32-298
               
               
               Cow position:chr13:34261362-34261089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:32-299
               
               
               Cow position:chr13:17568971-17569243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:32-300
               
               
               Cow position:chr13:5671464-5671730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:32-301
               
               
               Cow position:chr13:1042833-1043107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:32-302
               
               
               Cow position:chr13:6079291-6079557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-302
               
               
               Cow position:chr13:11260397-11260131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 153

               
               
               Conread position:32-302
               
               
               Cow position:chr13:17021601-17021871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:32-302
               
               
               Cow position:chr13:17745367-17745104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:32-302
               
               
               Cow position:chr13:20666261-20666532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:32-302
               
               
               Cow position:chr13:20879703-20879971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:32-302
               
               
               Cow position:chr13:21241965-21242230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr13:41806903-41806626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-302
               
               
               Cow position:chr13:52057672-52057411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:32-302
               
               
               Cow position:chr13:60974211-60973936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 176

               
               
               Conread position:32-304
               
               
               Cow position:chr13:8609423-8609693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:32-305
               
               
               Cow position:chr13:12670320-12670600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 50

               
               
               Conread position:32-305
               
               
               Cow position:chr13:15281809-15282083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:32-305
               
               
               Cow position:chr13:27525137-27525407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-305
               
               
               Cow position:chr13:34281804-34281529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:32-306
               
               
               Cow position:chr13:18696970-18696693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-307
               
               
               Cow position:chr13:54388893-54389172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:32-308
               
               
               Cow position:chr13:11381594-11381876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-310
               
               
               Cow position:chr13:40943372-40943086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):76, 218

               
               
               Conread position:32-311
               
               
               Cow position:chr13:3315550-3315830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:32-311
               
               
               Cow position:chr13:17439642-17439923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr13:17800200-17799924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:32-311
               
               
               Cow position:chr13:17970900-17971182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 164

               
               
               Conread position:32-311
               
               
               Cow position:chr13:20683993-20684284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):68, 114

               
               
               Conread position:32-311
               
               
               Cow position:chr13:21283582-21283859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):98, 110

               
               
               Conread position:32-311
               
               
               Cow position:chr13:23856340-23856054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr13:51115900-51116179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:32-311
               
               
               Cow position:chr13:51940864-51940579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:32-311
               
               
               Cow position:chr13:60429946-60430232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:32-312
               
               
               Cow position:chr13:6086776-6087048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):159, 37

               
               
               Conread position:32-314
               
               
               Cow position:chr13:13320912-13320639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:32-314
               
               
               Cow position:chr13:15195076-15195359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 123

               
               
               Conread position:32-314
               
               
               Cow position:chr13:15288801-15289077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:32-314
               
               
               Cow position:chr13:19393417-19393134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:32-314
               
               
               Cow position:chr13:20217260-20217556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:32-314
               
               
               Cow position:chr13:24369708-24369426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:32-314
               
               
               Cow position:chr13:25926920-25926630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:32-314
               
               
               Cow position:chr13:38283858-38284137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 77

               
               
               Conread position:32-314
               
               
               Cow position:chr13:49022746-49023024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):275, 105

               
               
               Conread position:32-315
               
               
               Cow position:chr13:11061115-11060828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:32-315
               
               
               Cow position:chr13:54583005-54582715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 200

               
               
               Conread position:32-316
               
               
               Cow position:chr13:60966895-60966606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:32-317
               
               
               Cow position:chr13:12989972-12989688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:32-318
               
               
               Cow position:chr13:2404867-2404601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:32-319
               
               
               Cow position:chr13:21107266-21106984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):66, 161

               
               
               Conread position:32-320
               
               
               Cow position:chr13:60508991-60509280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:32-322
               
               
               Cow position:chr13:152082-151807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-322
               
               
               Cow position:chr13:2774255-2773957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:32-322
               
               
               Cow position:chr13:12875844-12876134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:32-322
               
               
               Cow position:chr13:13261132-13260840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 185

               
               
               Conread position:32-322
               
               
               Cow position:chr13:15257254-15257527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr13:17114251-17114539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:32-322
               
               
               Cow position:chr13:19022403-19022106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr13:21275983-21275697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 122

               
               
               Conread position:32-322
               
               
               Cow position:chr13:23479154-23478870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:32-322
               
               
               Cow position:chr13:23960685-23960970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):257, 76

               
               
               Conread position:32-322
               
               
               Cow position:chr13:24230340-24230051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:32-322
               
               
               Cow position:chr13:32017398-32017674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):119, 52

               
               
               Conread position:32-322
               
               
               Cow position:chr13:32283252-32282966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr13:37069477-37069183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 264

               
               
               Conread position:32-322
               
               
               Cow position:chr13:37592810-37593109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr13:38329754-38329460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 260

               
               
               Conread position:32-322
               
               
               Cow position:chr13:44323028-44322734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr13:45023084-45023381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-322
               
               
               Cow position:chr13:52055471-52055752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:32-322
               
               
               Cow position:chr13:54702315-54702021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr13:55674081-55674368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:32-322
               
               
               Cow position:chr13:61976837-61977116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:33-264
               
               
               Cow position:chr13:8201359-8201591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:33-270
               
               
               Cow position:chr13:15528905-15529151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:33-272
               
               
               Cow position:chr13:7663297-7663538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:33-273
               
               
               Cow position:chr13:890045-890289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:33-276
               
               
               Cow position:chr13:17292006-17292251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:33-276
               
               
               Cow position:chr13:17821141-17821390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):73, 105

               
               
               Conread position:33-287
               
               
               Cow position:chr13:48037748-48037492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:33-295
               
               
               Cow position:chr13:39368082-39367820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 107

               
               
               Conread position:33-296
               
               
               Cow position:chr13:15991100-15991371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:33-298
               
               
               Cow position:chr13:9265705-9265970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:33-298
               
               
               Cow position:chr13:20784715-20784448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:33-301
               
               
               Cow position:chr13:13089146-13088885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:33-301
               
               
               Cow position:chr13:55316062-55316342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:33-302
               
               
               Cow position:chr13:14576334-14576069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:33-302
               
               
               Cow position:chr13:19882911-19883180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:33-307
               
               
               Cow position:chr13:23512494-23512218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:33-311
               
               
               Cow position:chr13:7076384-7076101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:33-311
               
               
               Cow position:chr13:38872841-38873099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:33-322
               
               
               Cow position:chr13:18995256-18994964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:34-225
               
               
               Cow position:chr13:10098865-10099056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:34-277
               
               
               Cow position:chr13:43480183-43479938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:34-291
               
               
               Cow position:chr13:43762295-43762034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:34-300
               
               
               Cow position:chr13:26698371-26698641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:34-322
               
               
               Cow position:chr13:46525319-46525587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:35-286
               
               
               Cow position:chr13:25434995-25435254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:35-298
               
               
               Cow position:chr13:37804004-37803749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):72, 99

               
               
               Conread position:35-300
               
               
               Cow position:chr13:11808683-11808435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 97

               
               
               Conread position:35-302
               
               
               Cow position:chr13:4552928-4552671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:35-306
               
               
               Cow position:chr13:12448867-12449136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 118

               
               
               Conread position:35-312
               
               
               Cow position:chr13:25817647-25817373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:35-314
               
               
               Cow position:chr13:21287962-21288243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:35-318
               
               
               Cow position:chr13:36771294-36771579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:36-214
               
               
               Cow position:chr13:30693829-30693656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:36-277
               
               
               Cow position:chr13:18835316-18835083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:36-299
               
               
               Cow position:chr13:43184749-43185021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:36-302
               
               
               Cow position:chr13:20288454-20288192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):72, 101

               
               
               Conread position:36-302
               
               
               Cow position:chr13:48165301-48165574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 60

               
               
               Conread position:36-316
               
               
               Cow position:chr13:20839687-20839407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:36-318
               
               
               Cow position:chr13:37381930-37381639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:36-322
               
               
               Cow position:chr13:9142415-9142115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 187

               
               
               Conread position:37-277
               
               
               Cow position:chr13:12202489-12202241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:37-306
               
               
               Cow position:chr13:1569046-1568782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:38-322
               
               
               Cow position:chr13:21135777-21136070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):5, 104

               
               
               Conread position:39-268
               
               
               Cow position:chr13:34555711-34555940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:39-282
               
               
               Cow position:chr13:21176201-21176445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:42-277
               
               
               Cow position:chr13:15194614-15194856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:42-286
               
               
               Cow position:chr13:15884902-15885150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:43-277
               
               
               Cow position:chr13:57494071-57494310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:44-302
               
               
               Cow position:chr13:6189500-6189746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:45-277
               
               
               Cow position:chr13:45073811-45074035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 109

               
               
               Conread position:48-305
               
               
               Cow position:chr13:19279203-19278945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:49-316
               
               
               Cow position:chr13:19320646-19320376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 96

               
               
               Conread position:51-297
               
               
               Cow position:chr13:20880817-20881068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:53-298
               
               
               Cow position:chr13:20155107-20154859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:55-270
               
               
               Cow position:chr13:7265020-7265234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:55-297
               
               
               Cow position:chr13:12974907-12974673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:55-311
               
               
               Cow position:chr13:8355302-8355049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):240, 77

               
               
               Conread position:57-287
               
               
               Cow position:chr13:46329501-46329737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:64-314
               
               
               Cow position:chr13:20534977-20534739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:65-308
               
               
               Cow position:chr13:23526204-23525958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:67-302
               
               
               Cow position:chr13:16714169-16714412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:69-300
               
               
               Cow position:chr13:47022450-47022221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:69-314
               
               
               Cow position:chr13:52477555-52477803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:80-297
               
               
               Cow position:chr13:45073177-45073396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:85-314
               
               
               Cow position:chr13:19610496-19610722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:85-322
               
               
               Cow position:chr13:18999607-18999373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 171

               
               
               Conread position:93-302
               
               
               Cow position:chr13:7149454-7149655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:93-322
               
               
               Cow position:chr13:1147090-1147309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:93-322
               
               
               Cow position:chr13:34728783-34729001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:94-269
               
               
               Cow position:chr13:48862038-48862208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-277
               
               
               Cow position:chr13:18181715-18181896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-294
               
               
               Cow position:chr13:20868698-20868888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr13:13196299-13196093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr13:20314561-20314767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:94-306
               
               
               Cow position:chr13:17838007-17837801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-307
               
               
               Cow position:chr13:18197549-18197759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-307
               
               
               Cow position:chr13:62008170-62007956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:94-314
               
               
               Cow position:chr13:12925831-12925619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):136, 43

               
               
               Conread position:94-314
               
               
               Cow position:chr13:17822893-17823108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:94-317
               
               
               Cow position:chr13:56148581-56148360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:94-317
               
               
               Cow position:chr13:56160386-56160607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:94-322
               
               
               Cow position:chr13:6861240-6861017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr13:42672364-42672588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:96-286
               
               
               Cow position:chr13:45108356-45108546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:96-305
               
               
               Cow position:chr13:35557049-35557258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:96-310
               
               
               Cow position:chr13:9981785-9981991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:96-317
               
               
               Cow position:chr13:13297731-13297516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):181, 41

               
               
               Conread position:97-284
               
               
               Cow position:chr13:8402111-8401928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:97-322
               
               
               Cow position:chr13:17350408-17350196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:99-302
               
               
               Cow position:chr13:38035890-38035693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:99-322
               
               
               Cow position:chr13:54128541-54128757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:101-297
               
               
               Cow position:chr13:25504584-25504391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:101-302
               
               
               Cow position:chr13:17611499-17611697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:101-316
               
               
               Cow position:chr13:21171521-21171728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:101-322
               
               
               Cow position:chr13:20271176-20271392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):150, 39

               
               
               Conread position:104-271
               
               
               Cow position:chr13:29123353-29123189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 26

               
               
               Conread position:104-301
               
               
               Cow position:chr13:21170577-21170381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:104-302
               
               
               Cow position:chr13:19007980-19007790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-305
               
               
               Cow position:chr13:15239472-15239658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:105-302
               
               
               Cow position:chr13:17089476-17089668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):177, 27

               
               
               Conread position:105-311
               
               
               Cow position:chr13:52585987-52586191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-302
               
               
               Cow position:chr13:16020898-16020705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:106-304
               
               
               Cow position:chr13:3211597-3211400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):190, 47

               
               
               Conread position:106-312
               
               
               Cow position:chr13:24110532-24110324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:106-322
               
               
               Cow position:chr13:10924867-10925081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 148

               
               
               Conread position:106-322
               
               
               Cow position:chr13:11103145-11103366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:107-282
               
               
               Cow position:chr13:48465784-48465957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:108-279
               
               
               Cow position:chr13:60393827-60393661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:108-293
               
               
               Cow position:chr13:29663074-29662891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:113-297
               
               
               Cow position:chr13:28440496-28440678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):176, 24

               
               
               Conread position:113-314
               
               
               Cow position:chr13:55494481-55494680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:114-282
               
               
               Cow position:chr13:13211925-13211758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:114-322
               
               
               Cow position:chr13:8350369-8350144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:116-300
               
               
               Cow position:chr13:9117534-9117709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:116-314
               
               
               Cow position:chr13:16160458-16160262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:119-281
               
               
               Cow position:chr13:31529912-31529753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:124-306
               
               
               Cow position:chr13:43525205-43525382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:127-287
               
               
               Cow position:chr13:84608-84446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:131-314
               
               
               Cow position:chr13:57985913-57986090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:133-299
               
               
               Cow position:chr13:15460752-15460919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:133-311
               
               
               Cow position:chr13:37640612-37640433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:136-322
               
               
               Cow position:chr13:6926536-6926354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:136-322
               
               
               Cow position:chr13:40154708-40154898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 183

               
               
               Conread position:137-322
               
               
               Cow position:chr13:6183397-6183590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:138-306
               
               
               Cow position:chr13:15083677-15083515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:143-272
               
               
               Cow position:chr13:47634520-47634391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-305
               
               
               Cow position:chr13:21980963-21981121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:143-308
               
               
               Cow position:chr13:17563753-17563588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:143-311
               
               
               Cow position:chr13:5006010-5005849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:143-322
               
               
               Cow position:chr13:13775231-13775411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:145-298
               
               
               Cow position:chr13:50568395-50568548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):143, 84

               
               
               Conread position:145-310
               
               
               Cow position:chr13:42640393-42640231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):159, 31

               
               
               Conread position:145-311
               
               
               Cow position:chr13:49255224-49255400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr13:3209310-3209496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:145-322
               
               
               Cow position:chr13:37614180-37614356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:146-300
               
               
               Cow position:chr13:37527943-37528097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-302
               
               
               Cow position:chr13:18340543-18340385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:146-311
               
               
               Cow position:chr13:19750725-19750560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:146-314
               
               
               Cow position:chr13:14645061-14644895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 42

               
               
               Conread position:146-315
               
               
               Cow position:chr13:37621350-37621518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):143, 63

               
               
               Conread position:146-316
               
               
               Cow position:chr13:54682111-54681941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):149, 42

               
               
               Conread position:147-302
               
               
               Cow position:chr13:14927269-14927116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 63

               
               
               Conread position:147-314
               
               
               Cow position:chr13:1462288-1462452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:148-284
               
               
               Cow position:chr13:36877068-36876931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:151-300
               
               
               Cow position:chr13:21188374-21188224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:151-308
               
               
               Cow position:chr13:40634872-40634712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:152-314
               
               
               Cow position:chr13:57769985-57770141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:156-297
               
               
               Cow position:chr13:8450330-8450186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:161-314
               
               
               Cow position:chr13:11565831-11565681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:161-322
               
               
               Cow position:chr13:53850819-53850662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:163-311
               
               
               Cow position:chr13:21295068-21294920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr13:8699744-8699901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr13:42849140-42849295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:166-311
               
               
               Cow position:chr13:52880878-52881021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):113, 43

               
               
               Conread position:166-322
               
               
               Cow position:chr13:16908207-16908055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:167-296
               
               
               Cow position:chr13:7046860-7046730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:167-300
               
               
               Cow position:chr13:6962441-6962307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:168-287
               
               
               Cow position:chr13:18866715-18866596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:168-298
               
               
               Cow position:chr13:49283792-49283924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:168-310
               
               
               Cow position:chr13:18092887-18093027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:170-321
               
               
               Cow position:chr13:1075053-1075202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:173-277
               
               
               Cow position:chr13:16156242-16156346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-293
               
               
               Cow position:chr13:21277485-21277604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-302
               
               
               Cow position:chr13:33854702-33854830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-310
               
               
               Cow position:chr13:12237426-12237293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:175-314
               
               
               Cow position:chr13:10711434-10711573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):62, 56

               
               
               Conread position:178-294
               
               
               Cow position:chr13:31507466-31507581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:178-297
               
               
               Cow position:chr13:52913851-52913729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:178-298
               
               
               Cow position:chr13:16790187-16790067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:179-320
               
               
               Cow position:chr13:26423028-26422881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:180-314
               
               
               Cow position:chr13:9391536-9391405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:180-314
               
               
               Cow position:chr13:37554898-37555029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:181-302
               
               
               Cow position:chr13:51249405-51249527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:182-322
               
               
               Cow position:chr13:16099147-16099287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 96

               
               
               Conread position:187-306
               
               
               Cow position:chr13:20826754-20826874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:190-301
               
               
               Cow position:chr13:52249082-52249193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:190-322
               
               
               Cow position:chr13:16525257-16525386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:194-309
               
               
               Cow position:chr13:28652703-28652588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-322
               
               
               Cow position:chr13:23478860-23478742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:199-322
               
               
               Cow position:chr13:28081679-28081558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:200-308
               
               
               Cow position:chr13:18701328-18701220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-322
               
               
               Cow position:chr13:47644019-47643894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:202-314
               
               
               Cow position:chr13:23399720-23399608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:203-322
               
               
               Cow position:chr13:53619957-53619842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr14:34096376-34096662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):230, 22

               
               
               Conread position:2-294
               
               
               Cow position:chr14:34199633-34199924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 134

               
               
               Conread position:2-322
               
               
               Cow position:chr14:9901388-9901070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:4-302
               
               
               Cow position:chr14:45677441-45677139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:4-315
               
               
               Cow position:chr14:40165639-40165320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:6-282
               
               
               Cow position:chr14:33309295-33309572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:6-297
               
               
               Cow position:chr14:10078481-10078183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 60

               
               
               Conread position:6-297
               
               
               Cow position:chr14:42154758-42155058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):99, 6

               
               
               Conread position:6-302
               
               
               Cow position:chr14:42596594-42596311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:6-308
               
               
               Cow position:chr14:4991208-4990907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:7-316
               
               
               Cow position:chr14:33338274-33338575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:8-322
               
               
               Cow position:chr14:48427281-48426970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:9-308
               
               
               Cow position:chr14:39926406-39926113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:9-322
               
               
               Cow position:chr14:33714473-33714776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:10-254
               
               
               Cow position:chr14:20010101-20010352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 141

               
               
               Conread position:10-271
               
               
               Cow position:chr14:24417091-24416819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):98, 135

               
               
               Conread position:10-276
               
               
               Cow position:chr14:8784389-8784138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:10-305
               
               
               Cow position:chr14:20826682-20826400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:10-311
               
               
               Cow position:chr14:38337942-38338231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 7

               
               
               Conread position:11-265
               
               
               Cow position:chr14:25002241-25001983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 129

               
               
               Conread position:11-280
               
               
               Cow position:chr14:38168889-38168625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:11-311
               
               
               Cow position:chr14:20384778-20385083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:11-314
               
               
               Cow position:chr14:16033215-16032911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:11-314
               
               
               Cow position:chr14:16237301-16237615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr14:24981660-24981342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:14-306
               
               
               Cow position:chr14:19593934-19594229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:15-302
               
               
               Cow position:chr14:19129714-19129417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):15, 141

               
               
               Conread position:17-304
               
               
               Cow position:chr14:48838795-48838504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):90, 120

               
               
               Conread position:21-275
               
               
               Cow position:chr14:15997568-15997827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 122

               
               
               Conread position:23-282
               
               
               Cow position:chr14:40433116-40432856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:27-298
               
               
               Cow position:chr14:16549814-16550088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:28-311
               
               
               Cow position:chr14:10630935-10631218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:29-291
               
               
               Cow position:chr14:13810126-13809863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:29-297
               
               
               Cow position:chr14:39770045-39770312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:29-298
               
               
               Cow position:chr14:47672697-47672967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:29-302
               
               
               Cow position:chr14:8101977-8101704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 72

               
               
               Conread position:29-302
               
               
               Cow position:chr14:13846175-13845897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):98, 88

               
               
               Conread position:29-306
               
               
               Cow position:chr14:45605279-45605005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 124

               
               
               Conread position:29-310
               
               
               Cow position:chr14:35420573-35420861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:29-322
               
               
               Cow position:chr14:6735672-6735969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:29-322
               
               
               Cow position:chr14:25779279-25778986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:29-322
               
               
               Cow position:chr14:42330539-42330244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:30-226
               
               
               Cow position:chr14:15260980-15260796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:30-277
               
               
               Cow position:chr14:23712874-23712618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:30-297
               
               
               Cow position:chr14:12511712-12511982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:30-322
               
               
               Cow position:chr14:27077172-27076864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr14:3162895-3162692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:32-264
               
               
               Cow position:chr14:21284812-21284576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:32-271
               
               
               Cow position:chr14:18904426-18904663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:32-276
               
               
               Cow position:chr14:19372526-19372276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-276
               
               
               Cow position:chr14:32452438-32452186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:32-277
               
               
               Cow position:chr14:24796242-24796492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:32-282
               
               
               Cow position:chr14:9308409-9308161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:32-282
               
               
               Cow position:chr14:17841104-17841360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:32-282
               
               
               Cow position:chr14:38355370-38355119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:32-283
               
               
               Cow position:chr14:35018570-35018823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-283
               
               
               Cow position:chr14:35544333-35544574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:32-284
               
               
               Cow position:chr14:25403756-25404005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-285
               
               
               Cow position:chr14:39778935-39778680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:32-287
               
               
               Cow position:chr14:16256951-16256685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:32-287
               
               
               Cow position:chr14:32371561-32371814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:32-292
               
               
               Cow position:chr14:19863245-19863513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:32-294
               
               
               Cow position:chr14:33247248-33247510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:32-295
               
               
               Cow position:chr14:5836086-5835833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):176, 102

               
               
               Conread position:32-296
               
               
               Cow position:chr14:4877046-4877310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:32-296
               
               
               Cow position:chr14:10858617-10858353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:32-297
               
               
               Cow position:chr14:14621989-14622259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 122

               
               
               Conread position:32-297
               
               
               Cow position:chr14:19189221-19188959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):73, 85

               
               
               Conread position:32-297
               
               
               Cow position:chr14:29632701-29632964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:32-297
               
               
               Cow position:chr14:41211038-41210771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 114

               
               
               Conread position:32-298
               
               
               Cow position:chr14:19618567-19618835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:32-301
               
               
               Cow position:chr14:3195033-3194778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:32-301
               
               
               Cow position:chr14:13042941-13042669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:32-301
               
               
               Cow position:chr14:18345549-18345817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:32-301
               
               
               Cow position:chr14:20666839-20667096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:32-302
               
               
               Cow position:chr14:8786366-8786635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:32-302
               
               
               Cow position:chr14:22989217-22988945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:32-302
               
               
               Cow position:chr14:33751707-33751449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr14:33791371-33791103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):76, 177

               
               
               Conread position:32-305
               
               
               Cow position:chr14:20712502-20712781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:32-306
               
               
               Cow position:chr14:38143927-38144200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:32-307
               
               
               Cow position:chr14:33830482-33830206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:32-307
               
               
               Cow position:chr14:41749573-41749851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:32-308
               
               
               Cow position:chr14:37131840-37131567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr14:8750260-8749981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 179

               
               
               Conread position:32-311
               
               
               Cow position:chr14:22583326-22583057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:32-311
               
               
               Cow position:chr14:28115001-28115283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr14:34984048-34983769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):193, 76

               
               
               Conread position:32-314
               
               
               Cow position:chr14:23080580-23080855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:32-314
               
               
               Cow position:chr14:23682448-23682165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-320
               
               
               Cow position:chr14:27848383-27848078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr14:1646007-1646287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-322
               
               
               Cow position:chr14:20110538-20110823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-322
               
               
               Cow position:chr14:21357736-21357455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:32-322
               
               
               Cow position:chr14:21933156-21933447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):72, 115

               
               
               Conread position:32-322
               
               
               Cow position:chr14:24237010-24236720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:32-322
               
               
               Cow position:chr14:26442157-26442448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:33-252
               
               
               Cow position:chr14:41325256-41325486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:33-275
               
               
               Cow position:chr14:27591770-27592018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:33-277
               
               
               Cow position:chr14:33773870-33774111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:33-316
               
               
               Cow position:chr14:24608150-24607865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):74, 116

               
               
               Conread position:33-320
               
               
               Cow position:chr14:20640443-20640729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 105

               
               
               Conread position:33-322
               
               
               Cow position:chr14:15492780-15492486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:34-271
               
               
               Cow position:chr14:34082971-34083223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):80, 64

               
               
               Conread position:34-297
               
               
               Cow position:chr14:24387631-24387357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:34-297
               
               
               Cow position:chr14:36254524-36254780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:34-299
               
               
               Cow position:chr14:41966423-41966147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:34-302
               
               
               Cow position:chr14:16760579-16760309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:34-306
               
               
               Cow position:chr14:15054806-15055082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:35-297
               
               
               Cow position:chr14:18309117-18309391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:35-298
               
               
               Cow position:chr14:5630343-5630078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:35-305
               
               
               Cow position:chr14:38747848-38747586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:35-311
               
               
               Cow position:chr14:37883733-37884014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:35-316
               
               
               Cow position:chr14:44084297-44084593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:35-322
               
               
               Cow position:chr14:26433062-26433351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:35-322
               
               
               Cow position:chr14:37447287-37447570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:36-275
               
               
               Cow position:chr14:39774870-39775112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):6, 39

               
               
               Conread position:36-302
               
               
               Cow position:chr14:4202912-4203187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:36-304
               
               
               Cow position:chr14:48740690-48740958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:37-296
               
               
               Cow position:chr14:49824446-49824702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:45-226
               
               
               Cow position:chr14:17831083-17830899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:49-297
               
               
               Cow position:chr14:48773072-48772821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:55-306
               
               
               Cow position:chr14:7695423-7695173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:56-322
               
               
               Cow position:chr14:38527584-38527311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:57-306
               
               
               Cow position:chr14:22941562-22941821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:67-277
               
               
               Cow position:chr14:19360044-19359824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:67-277
               
               
               Cow position:chr14:29698208-29698425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:69-283
               
               
               Cow position:chr14:3779475-3779265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):158, 17

               
               
               Conread position:85-312
               
               
               Cow position:chr14:34331201-34331425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:90-302
               
               
               Cow position:chr14:16524599-16524378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:90-320
               
               
               Cow position:chr14:41486139-41486370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:91-286
               
               
               Cow position:chr14:41837753-41837946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:94-287
               
               
               Cow position:chr14:4282393-4282580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:94-292
               
               
               Cow position:chr14:16834440-16834243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr14:12954268-12954473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:94-309
               
               
               Cow position:chr14:42437140-42436929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:94-315
               
               
               Cow position:chr14:19951684-19951463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):137, 40

               
               
               Conread position:94-320
               
               
               Cow position:chr14:1796305-1796092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:94-320
               
               
               Cow position:chr14:7036240-7036460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr14:10693144-10693359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr14:24945376-24945599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):163, 7

               
               
               Conread position:94-322
               
               
               Cow position:chr14:33300817-33300593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):216, 39

               
               
               Conread position:95-303
               
               
               Cow position:chr14:14316996-14316799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:95-314
               
               
               Cow position:chr14:40754130-40754346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:96-318
               
               
               Cow position:chr14:5557006-5557221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:96-322
               
               
               Cow position:chr14:6541611-6541829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):134, 35

               
               
               Conread position:98-277
               
               
               Cow position:chr14:19959622-19959798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):106, 35

               
               
               Conread position:101-295
               
               
               Cow position:chr14:40209010-40208814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:104-249
               
               
               Cow position:chr14:2345174-2345031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:104-263
               
               
               Cow position:chr14:42480114-42480267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:105-300
               
               
               Cow position:chr14:15039507-15039698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:106-276
               
               
               Cow position:chr14:803790-803623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:106-305
               
               
               Cow position:chr14:12035510-12035319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:106-311
               
               
               Cow position:chr14:25225834-25225630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:106-322
               
               
               Cow position:chr14:7636392-7636603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:109-293
               
               
               Cow position:chr14:47170254-47170433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:109-322
               
               
               Cow position:chr14:48900275-48900064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):169, 33

               
               
               Conread position:110-306
               
               
               Cow position:chr14:41190985-41191188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:116-298
               
               
               Cow position:chr14:11643161-11643334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:121-302
               
               
               Cow position:chr14:10852120-10851945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:124-277
               
               
               Cow position:chr14:24913966-24913812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:130-293
               
               
               Cow position:chr14:13731016-13731180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:131-302
               
               
               Cow position:chr14:40191665-40191504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:133-320
               
               
               Cow position:chr14:28924248-28924065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:134-303
               
               
               Cow position:chr14:20481763-20481930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:136-302
               
               
               Cow position:chr14:25903608-25903442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-322
               
               
               Cow position:chr14:24712546-24712734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:137-277
               
               
               Cow position:chr14:2038731-2038872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:137-297
               
               
               Cow position:chr14:12924378-12924214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 5

               
               
               Conread position:137-311
               
               
               Cow position:chr14:16457593-16457422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:137-311
               
               
               Cow position:chr14:45577016-45577190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-316
               
               
               Cow position:chr14:2833328-2833507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 150

               
               
               Conread position:137-322
               
               
               Cow position:chr14:25919930-25919745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:137-322
               
               
               Cow position:chr14:29734288-29734466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:142-305
               
               
               Cow position:chr14:43868380-43868218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:142-306
               
               
               Cow position:chr14:4848418-4848255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:142-321
               
               
               Cow position:chr14:11056662-11056835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:143-295
               
               
               Cow position:chr14:20349659-20349814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 78

               
               
               Conread position:145-294
               
               
               Cow position:chr14:11729042-11729193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:145-295
               
               
               Cow position:chr14:31177220-31177370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:145-322
               
               
               Cow position:chr14:12033173-12033347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:146-284
               
               
               Cow position:chr14:2570958-2571096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-320
               
               
               Cow position:chr14:9308130-9307963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:148-322
               
               
               Cow position:chr14:18302026-18301849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:149-295
               
               
               Cow position:chr14:11577132-11576988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:152-302
               
               
               Cow position:chr14:10706936-10706788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:156-298
               
               
               Cow position:chr14:2981614-2981755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:156-322
               
               
               Cow position:chr14:15469925-15470088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:157-282
               
               
               Cow position:chr14:36775706-36775583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:161-307
               
               
               Cow position:chr14:40287644-40287500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:169-274
               
               
               Cow position:chr14:5224731-5224836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:170-293
               
               
               Cow position:chr14:3173694-3173817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:171-311
               
               
               Cow position:chr14:24580682-24580543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:171-314
               
               
               Cow position:chr14:41156682-41156825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-310
               
               
               Cow position:chr14:23663368-23663500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:179-307
               
               
               Cow position:chr14:28707081-28706953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:179-322
               
               
               Cow position:chr14:47224332-47224474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:180-302
               
               
               Cow position:chr14:20736644-20736522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-318
               
               
               Cow position:chr14:49825872-49825733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:182-306
               
               
               Cow position:chr14:21530045-21530166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:199-322
               
               
               Cow position:chr14:32784101-32784220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:203-314
               
               
               Cow position:chr14:15228550-15228439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-316
               
               
               Cow position:chr14:19633231-19633125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-322
               
               
               Cow position:chr14:24746470-24746354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:1-228
               
               
               Cow position:chr15:21908198-21907967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 136

               
               
               Conread position:1-278
               
               
               Cow position:chr15:16640045-16639759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:1-321
               
               
               Cow position:chr15:45151-45481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:1-322
               
               
               Cow position:chr15:23572414-23572744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-322
               
               
               Cow position:chr15:28924501-28924813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:2-253
               
               
               Cow position:chr15:13515627-13515373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):106, 8

               
               
               Conread position:2-314
               
               
               Cow position:chr15:21894047-21893725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:4-277
               
               
               Cow position:chr15:5730200-5729924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:5-322
               
               
               Cow position:chr15:5726587-5726257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):24, 150

               
               
               Conread position:6-238
               
               
               Cow position:chr15:11658316-11658551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-301
               
               
               Cow position:chr15:20370199-20370496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:6-306
               
               
               Cow position:chr15:36782072-36782373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:6-311
               
               
               Cow position:chr15:39316575-39316893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-314
               
               
               Cow position:chr15:5420626-5420937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:6-314
               
               
               Cow position:chr15:18671195-18671508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 6

               
               
               Conread position:8-238
               
               
               Cow position:chr15:24044843-24045078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):95, 125

               
               
               Conread position:8-296
               
               
               Cow position:chr15:39082452-39082176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):137, 17

               
               
               Conread position:8-322
               
               
               Cow position:chr15:17870030-17870347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):100, 126

               
               
               Conread position:8-322
               
               
               Cow position:chr15:25208514-25208814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:9-305
               
               
               Cow position:chr15:16616455-16616148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:10-302
               
               
               Cow position:chr15:1722594-1722892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:10-322
               
               
               Cow position:chr15:16261563-16261275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:11-288
               
               
               Cow position:chr15:7192010-7192291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr15:225555-225858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:11-322
               
               
               Cow position:chr15:26911826-26912128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:14-311
               
               
               Cow position:chr15:286729-286429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:16-292
               
               
               Cow position:chr15:12870616-12870896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 131

               
               
               Conread position:17-265
               
               
               Cow position:chr15:13387326-13387072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 122

               
               
               Conread position:17-320
               
               
               Cow position:chr15:16583460-16583750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:18-270
               
               
               Cow position:chr15:26117755-26117514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:18-306
               
               
               Cow position:chr15:28823572-28823865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:19-300
               
               
               Cow position:chr15:26919033-26919315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:19-320
               
               
               Cow position:chr15:20391033-20391331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:19-322
               
               
               Cow position:chr15:21821680-21821982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:23-311
               
               
               Cow position:chr15:42788910-42789200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:27-275
               
               
               Cow position:chr15:30986049-30986310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:27-277
               
               
               Cow position:chr15:28038993-28038764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:27-282
               
               
               Cow position:chr15:33306346-33306088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:27-293
               
               
               Cow position:chr15:30982161-30981908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:27-302
               
               
               Cow position:chr15:6647686-6647408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 186

               
               
               Conread position:27-315
               
               
               Cow position:chr15:10737509-10737795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:28-305
               
               
               Cow position:chr15:22939090-22939370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:28-308
               
               
               Cow position:chr15:6530613-6530896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:29-298
               
               
               Cow position:chr15:275878-275616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 65

               
               
               Conread position:29-301
               
               
               Cow position:chr15:662237-662505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:29-311
               
               
               Cow position:chr15:17353413-17353700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:29-311
               
               
               Cow position:chr15:29331237-29330955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):79, 6

               
               
               Conread position:29-322
               
               
               Cow position:chr15:10608071-10608369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:30-300
               
               
               Cow position:chr15:24994287-24994552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:30-301
               
               
               Cow position:chr15:53716666-53716390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:30-305
               
               
               Cow position:chr15:13554588-13554307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:30-322
               
               
               Cow position:chr15:22938536-22938822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:31-302
               
               
               Cow position:chr15:14576567-14576286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:32-224
               
               
               Cow position:chr15:38877075-38877268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:32-228
               
               
               Cow position:chr15:7456929-7456729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 109

               
               
               Conread position:32-265
               
               
               Cow position:chr15:3726350-3726119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:32-275
               
               
               Cow position:chr15:23768031-23768272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:32-275
               
               
               Cow position:chr15:41125339-41125588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:32-276
               
               
               Cow position:chr15:14870974-14870727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 64

               
               
               Conread position:32-277
               
               
               Cow position:chr15:25907140-25906890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:32-277
               
               
               Cow position:chr15:39090502-39090280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:32-278
               
               
               Cow position:chr15:20352061-20351814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:32-281
               
               
               Cow position:chr15:43599416-43599168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:32-286
               
               
               Cow position:chr15:24128257-24128005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:32-286
               
               
               Cow position:chr15:26404506-26404258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:32-287
               
               
               Cow position:chr15:34206957-34207214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 115

               
               
               Conread position:32-293
               
               
               Cow position:chr15:10088551-10088282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:32-293
               
               
               Cow position:chr15:16543226-16543485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):205, 57

               
               
               Conread position:32-293
               
               
               Cow position:chr15:39598474-39598209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:32-297
               
               
               Cow position:chr15:26079132-26079390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:32-297
               
               
               Cow position:chr15:46563262-46563521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:32-298
               
               
               Cow position:chr15:5234772-5235035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-298
               
               
               Cow position:chr15:20081988-20081733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:32-298
               
               
               Cow position:chr15:22531888-22531630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:32-298
               
               
               Cow position:chr15:29604484-29604738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):163, 84

               
               
               Conread position:32-298
               
               
               Cow position:chr15:34140209-34139943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:32-301
               
               
               Cow position:chr15:2141068-2141344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:32-301
               
               
               Cow position:chr15:53036737-53037006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:32-302
               
               
               Cow position:chr15:12304873-12304596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-302
               
               
               Cow position:chr15:14505657-14505394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr15:16823169-16822897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:32-302
               
               
               Cow position:chr15:20422547-20422821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 128

               
               
               Conread position:32-302
               
               
               Cow position:chr15:29810346-29810082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:32-305
               
               
               Cow position:chr15:245008-244737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:32-305
               
               
               Cow position:chr15:16476517-16476775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:32-306
               
               
               Cow position:chr15:17100478-17100752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:32-308
               
               
               Cow position:chr15:40999837-41000119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 170

               
               
               Conread position:32-310
               
               
               Cow position:chr15:21388936-21389215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:32-311
               
               
               Cow position:chr15:10335988-10335707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr15:22871838-22871563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:32-311
               
               
               Cow position:chr15:33976457-33976746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr15:47042409-47042686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:32-314
               
               
               Cow position:chr15:33643321-33643036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:32-314
               
               
               Cow position:chr15:36888055-36887784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:32-314
               
               
               Cow position:chr15:47843879-47844145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:32-315
               
               
               Cow position:chr15:22532469-22532197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):275, 76

               
               
               Conread position:32-315
               
               
               Cow position:chr15:34896994-34896709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):68, 226

               
               
               Conread position:32-318
               
               
               Cow position:chr15:1083144-1083432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:32-321
               
               
               Cow position:chr15:27900277-27900571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr15:915614-915897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:32-322
               
               
               Cow position:chr15:1329871-1330164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:32-322
               
               
               Cow position:chr15:4295996-4295704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:32-322
               
               
               Cow position:chr15:6970214-6969930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr15:8354275-8353986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr15:9879164-9879438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):199, 58

               
               
               Conread position:32-322
               
               
               Cow position:chr15:10456781-10457083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr15:16667271-16667553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 193

               
               
               Conread position:32-322
               
               
               Cow position:chr15:20459068-20459366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):31, 127

               
               
               Conread position:32-322
               
               
               Cow position:chr15:21803439-21803720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):223, 18

               
               
               Conread position:32-322
               
               
               Cow position:chr15:23275766-23275478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:32-322
               
               
               Cow position:chr15:26158385-26158654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr15:26896483-26896754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr15:30047311-30047609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr15:32323973-32324263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 114

               
               
               Conread position:32-322
               
               
               Cow position:chr15:33625182-33624897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:32-322
               
               
               Cow position:chr15:36391899-36391616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-322
               
               
               Cow position:chr15:43626700-43626410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:33-262
               
               
               Cow position:chr15:41360733-41360952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):115, 39

               
               
               Conread position:33-276
               
               
               Cow position:chr15:4093702-4093949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 116

               
               
               Conread position:33-277
               
               
               Cow position:chr15:29340294-29340044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:33-282
               
               
               Cow position:chr15:46868481-46868736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:33-297
               
               
               Cow position:chr15:11011374-11011640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:33-302
               
               
               Cow position:chr15:9107267-9106990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:33-302
               
               
               Cow position:chr15:23696680-23696947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:33-303
               
               
               Cow position:chr15:3700055-3700330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:33-304
               
               
               Cow position:chr15:52611540-52611257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:33-311
               
               
               Cow position:chr15:47592428-47592714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):29, 42

               
               
               Conread position:33-322
               
               
               Cow position:chr15:17084439-17084151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):32, 150

               
               
               Conread position:33-322
               
               
               Cow position:chr15:19186388-19186673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:33-322
               
               
               Cow position:chr15:31857819-31857533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:33-322
               
               
               Cow position:chr15:38883383-38883087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:34-275
               
               
               Cow position:chr15:6905291-6905062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:34-291
               
               
               Cow position:chr15:16307642-16307390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):248, 74

               
               
               Conread position:34-298
               
               
               Cow position:chr15:794787-795060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:34-302
               
               
               Cow position:chr15:50302413-50302144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:34-306
               
               
               Cow position:chr15:22553313-22553584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:34-311
               
               
               Cow position:chr15:49258092-49257815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):74, 97

               
               
               Conread position:34-322
               
               
               Cow position:chr15:20486983-20487265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:35-191
               
               
               Cow position:chr15:23703003-23702848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:35-297
               
               
               Cow position:chr15:17337587-17337325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:35-298
               
               
               Cow position:chr15:4178708-4178982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):73, 195

               
               
               Conread position:35-306
               
               
               Cow position:chr15:4418172-4418445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:35-314
               
               
               Cow position:chr15:36353897-36353614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:35-322
               
               
               Cow position:chr15:16112630-16112339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:36-263
               
               
               Cow position:chr15:23567893-23568130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:36-280
               
               
               Cow position:chr15:50322823-50322574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:36-284
               
               
               Cow position:chr15:36259375-36259629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:36-295
               
               
               Cow position:chr15:39599669-39599411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 175

               
               
               Conread position:36-302
               
               
               Cow position:chr15:17763135-17762865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:36-311
               
               
               Cow position:chr15:35945753-35945480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:37-301
               
               
               Cow position:chr15:49274178-49273918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:38-298
               
               
               Cow position:chr15:40957803-40957545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 51

               
               
               Conread position:38-309
               
               
               Cow position:chr15:24981967-24982228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):146, 70

               
               
               Conread position:39-308
               
               
               Cow position:chr15:12655690-12655967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:42-301
               
               
               Cow position:chr15:2952907-2953177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:42-313
               
               
               Cow position:chr15:1297960-1297690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:44-288
               
               
               Cow position:chr15:8253839-8254071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:44-322
               
               
               Cow position:chr15:30470750-30471034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:48-302
               
               
               Cow position:chr15:51307464-51307721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:57-298
               
               
               Cow position:chr15:31560196-31560427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:63-302
               
               
               Cow position:chr15:49784090-49784324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:67-282
               
               
               Cow position:chr15:14888444-14888666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:68-301
               
               
               Cow position:chr15:10563309-10563542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:68-322
               
               
               Cow position:chr15:36793297-36793552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):43, 195

               
               
               Conread position:69-308
               
               
               Cow position:chr15:5658027-5657786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:81-322
               
               
               Cow position:chr15:10442327-10442566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:85-281
               
               
               Cow position:chr15:10660379-10660576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:86-303
               
               
               Cow position:chr15:52317228-52317012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):188, 51

               
               
               Conread position:87-311
               
               
               Cow position:chr15:44280271-44280051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:90-302
               
               
               Cow position:chr15:32977679-32977889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):198, 52

               
               
               Conread position:94-277
               
               
               Cow position:chr15:35425652-35425826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-290
               
               
               Cow position:chr15:16908593-16908403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:94-303
               
               
               Cow position:chr15:14176338-14176542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-306
               
               
               Cow position:chr15:36846013-36846230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):144, 36

               
               
               Conread position:94-308
               
               
               Cow position:chr15:35440914-35441126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:94-311
               
               
               Cow position:chr15:31175962-31175742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:94-321
               
               
               Cow position:chr15:5158536-5158317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr15:8665430-8665662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 168

               
               
               Conread position:101-297
               
               
               Cow position:chr15:6272731-6272924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:101-304
               
               
               Cow position:chr15:14988146-14987946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:101-322
               
               
               Cow position:chr15:13432650-13432427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:102-271
               
               
               Cow position:chr15:52809429-52809593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:103-291
               
               
               Cow position:chr15:41087746-41087934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:103-316
               
               
               Cow position:chr15:50660783-50660562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:104-272
               
               
               Cow position:chr15:22442121-22442289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:104-274
               
               
               Cow position:chr15:40415487-40415654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):151, 37

               
               
               Conread position:104-282
               
               
               Cow position:chr15:37284607-37284431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:104-285
               
               
               Cow position:chr15:44237570-44237392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):115, 29

               
               
               Conread position:104-286
               
               
               Cow position:chr15:30795135-30794954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:104-293
               
               
               Cow position:chr15:48710901-48711087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:104-297
               
               
               Cow position:chr15:32234179-32234366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):181, 37

               
               
               Conread position:104-302
               
               
               Cow position:chr15:31928745-31928940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):178, 38

               
               
               Conread position:104-314
               
               
               Cow position:chr15:4694897-4694692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:104-314
               
               
               Cow position:chr15:36952048-36952255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:104-317
               
               
               Cow position:chr15:26718769-26718975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr15:13395702-13395493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:105-301
               
               
               Cow position:chr15:3695785-3695593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:106-294
               
               
               Cow position:chr15:16603972-16603791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:106-302
               
               
               Cow position:chr15:38827175-38827366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:108-295
               
               
               Cow position:chr15:9497352-9497535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:109-298
               
               
               Cow position:chr15:31025138-31024955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:111-302
               
               
               Cow position:chr15:14281696-14281507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:111-308
               
               
               Cow position:chr15:40594357-40594553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:116-314
               
               
               Cow position:chr15:11908809-11909002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):84, 10

               
               
               Conread position:117-285
               
               
               Cow position:chr15:47773351-47773516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:125-297
               
               
               Cow position:chr15:26851093-26851268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:125-322
               
               
               Cow position:chr15:15154431-15154241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:126-322
               
               
               Cow position:chr15:31637434-31637240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:132-302
               
               
               Cow position:chr15:27063394-27063563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:133-316
               
               
               Cow position:chr15:41056075-41056261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:133-320
               
               
               Cow position:chr15:50333109-50332922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:133-322
               
               
               Cow position:chr15:11912433-11912619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):155, 7

               
               
               Conread position:134-311
               
               
               Cow position:chr15:27016124-27016298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:137-322
               
               
               Cow position:chr15:22984697-22984513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):144, 41

               
               
               Conread position:142-305
               
               
               Cow position:chr15:21903292-21903455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-308
               
               
               Cow position:chr15:14261141-14261305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:142-320
               
               
               Cow position:chr15:4485272-4485095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:144-309
               
               
               Cow position:chr15:10049195-10049358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:145-322
               
               
               Cow position:chr15:2931451-2931626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:147-311
               
               
               Cow position:chr15:25650300-25650461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:148-301
               
               
               Cow position:chr15:30316455-30316606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:148-307
               
               
               Cow position:chr15:26442327-26442170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:150-301
               
               
               Cow position:chr15:18587565-18587711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:150-322
               
               
               Cow position:chr15:44671225-44671398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:151-306
               
               
               Cow position:chr15:19002167-19002326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:152-286
               
               
               Cow position:chr15:13669755-13669888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:152-322
               
               
               Cow position:chr15:921853-921692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:153-307
               
               
               Cow position:chr15:48590138-48590289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:154-298
               
               
               Cow position:chr15:18776645-18776789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:156-320
               
               
               Cow position:chr15:2389801-2389638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:157-302
               
               
               Cow position:chr15:22787939-22787795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:158-322
               
               
               Cow position:chr15:39520270-39520102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:162-300
               
               
               Cow position:chr15:41475732-41475868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 87

               
               
               Conread position:163-270
               
               
               Cow position:chr15:25758079-25757971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:163-316
               
               
               Cow position:chr15:52432443-52432289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 139

               
               
               Conread position:166-322
               
               
               Cow position:chr15:8642211-8642054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):118, 35

               
               
               Conread position:166-322
               
               
               Cow position:chr15:49483722-49483571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:167-305
               
               
               Cow position:chr15:34223959-34223821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:171-300
               
               
               Cow position:chr15:36422701-36422576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:171-314
               
               
               Cow position:chr15:28099201-28099056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:172-322
               
               
               Cow position:chr15:29793105-29793259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:173-298
               
               
               Cow position:chr15:41534737-41534612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 58

               
               
               Conread position:173-310
               
               
               Cow position:chr15:15992556-15992692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:174-302
               
               
               Cow position:chr15:48326145-48326270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:175-310
               
               
               Cow position:chr15:24953438-24953573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-282
               
               
               Cow position:chr15:16525647-16525547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:182-322
               
               
               Cow position:chr15:4500781-4500643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:184-306
               
               
               Cow position:chr15:39911937-39911817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:201-308
               
               
               Cow position:chr15:1984355-1984248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:203-302
               
               
               Cow position:chr15:18703878-18703978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1-282
               
               
               Cow position:chr16:41752745-41752472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:1-298
               
               
               Cow position:chr16:42242291-42241990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 234

               
               
               Conread position:1-301
               
               
               Cow position:chr16:48340869-48340562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:1-306
               
               
               Cow position:chr16:38663884-38663575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-310
               
               
               Cow position:chr16:24825898-24826215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):103, 165

               
               
               Conread position:1-322
               
               
               Cow position:chr16:8066057-8065740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:2-273
               
               
               Cow position:chr16:52889576-52889309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:2-308
               
               
               Cow position:chr16:39616573-39616860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:2-321
               
               
               Cow position:chr16:8448819-8448508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:4-299
               
               
               Cow position:chr16:25380663-25380364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:4-322
               
               
               Cow position:chr16:4059185-4059511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:5-282
               
               
               Cow position:chr16:14974704-14974432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:5-297
               
               
               Cow position:chr16:48370112-48369823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:6-228
               
               
               Cow position:chr16:22124117-22123912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):88, 6

               
               
               Conread position:6-258
               
               
               Cow position:chr16:39514239-39513988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-286
               
               
               Cow position:chr16:43505969-43505694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:6-298
               
               
               Cow position:chr16:14754493-14754195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-298
               
               
               Cow position:chr16:19003680-19003404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:6-298
               
               
               Cow position:chr16:19670504-19670225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 71

               
               
               Conread position:6-304
               
               
               Cow position:chr16:49169554-49169247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):84, 149

               
               
               Conread position:6-306
               
               
               Cow position:chr16:6379271-6378990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:6-309
               
               
               Cow position:chr16:43801085-43800780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:6-322
               
               
               Cow position:chr16:15824613-15824297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 134

               
               
               Conread position:7-277
               
               
               Cow position:chr16:56231663-56231934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:7-322
               
               
               Cow position:chr16:24143097-24142805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:8-282
               
               
               Cow position:chr16:6344601-6344330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 5

               
               
               Conread position:8-287
               
               
               Cow position:chr16:4626557-4626274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:8-314
               
               
               Cow position:chr16:45139506-45139809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:8-322
               
               
               Cow position:chr16:33226705-33226393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):95, 141

               
               
               Conread position:9-274
               
               
               Cow position:chr16:7542117-7542401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:9-276
               
               
               Cow position:chr16:48398418-48398148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:9-298
               
               
               Cow position:chr16:12361144-12360844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:9-300
               
               
               Cow position:chr16:46552646-46552925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:9-305
               
               
               Cow position:chr16:48956625-48956932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):21, 148

               
               
               Conread position:9-306
               
               
               Cow position:chr16:53086497-53086204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:9-311
               
               
               Cow position:chr16:37669902-37669595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 135

               
               
               Conread position:9-312
               
               
               Cow position:chr16:39646382-39646683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:9-314
               
               
               Cow position:chr16:23681200-23681506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:9-322
               
               
               Cow position:chr16:11615400-11615098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:9-322
               
               
               Cow position:chr16:46433495-46433180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:10-258
               
               
               Cow position:chr16:47643252-47643502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:10-265
               
               
               Cow position:chr16:52789894-52790149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:10-268
               
               
               Cow position:chr16:10352706-10352981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:10-281
               
               
               Cow position:chr16:18402521-18402797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-296
               
               
               Cow position:chr16:5836415-5836711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:10-300
               
               
               Cow position:chr16:8812247-8811966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):98, 127

               
               
               Conread position:10-302
               
               
               Cow position:chr16:13989816-13990107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):23, 130

               
               
               Conread position:10-302
               
               
               Cow position:chr16:51598770-51598481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):102, 133

               
               
               Conread position:10-308
               
               
               Cow position:chr16:8933590-8933290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:10-312
               
               
               Cow position:chr16:21317759-21317449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 55

               
               
               Conread position:10-322
               
               
               Cow position:chr16:3047502-3047198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:10-322
               
               
               Cow position:chr16:4275902-4275598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:11-233
               
               
               Cow position:chr16:51556466-51556267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:11-297
               
               
               Cow position:chr16:5256836-5257123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:11-297
               
               
               Cow position:chr16:9973658-9973372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:11-302
               
               
               Cow position:chr16:8068982-8068692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:11-311
               
               
               Cow position:chr16:15960455-15960149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 134

               
               
               Conread position:11-322
               
               
               Cow position:chr16:7456626-7456311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr16:42443990-42444305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:14-314
               
               
               Cow position:chr16:820088-820396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:19-297
               
               
               Cow position:chr16:41530447-41530173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:19-302
               
               
               Cow position:chr16:7583239-7583531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 133

               
               
               Conread position:19-302
               
               
               Cow position:chr16:42752700-42752986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:19-314
               
               
               Cow position:chr16:37452774-37452472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 125

               
               
               Conread position:23-302
               
               
               Cow position:chr16:24855389-24855675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 125

               
               
               Conread position:27-276
               
               
               Cow position:chr16:8315332-8315088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):82, 115

               
               
               Conread position:27-277
               
               
               Cow position:chr16:14125006-14125243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:27-291
               
               
               Cow position:chr16:27723065-27723345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:27-301
               
               
               Cow position:chr16:13689517-13689797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 123

               
               
               Conread position:27-301
               
               
               Cow position:chr16:39394429-39394700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:27-314
               
               
               Cow position:chr16:13195489-13195196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 123

               
               
               Conread position:28-225
               
               
               Cow position:chr16:54287724-54287920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 53

               
               
               Conread position:28-244
               
               
               Cow position:chr16:45645832-45645614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:28-275
               
               
               Cow position:chr16:52835030-52834783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:28-322
               
               
               Cow position:chr16:7075769-7076065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:29-282
               
               
               Cow position:chr16:23738033-23738293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 122

               
               
               Conread position:29-293
               
               
               Cow position:chr16:10504689-10504951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:29-293
               
               
               Cow position:chr16:11008199-11008467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):29, 116

               
               
               Conread position:29-295
               
               
               Cow position:chr16:30715350-30715628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 128

               
               
               Conread position:29-296
               
               
               Cow position:chr16:12060271-12060540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):78, 111

               
               
               Conread position:29-299
               
               
               Cow position:chr16:11105407-11105681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:29-301
               
               
               Cow position:chr16:20634024-20633744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:29-302
               
               
               Cow position:chr16:17903794-17903513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:29-306
               
               
               Cow position:chr16:6319052-6319339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:29-308
               
               
               Cow position:chr16:50688379-50688659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:29-314
               
               
               Cow position:chr16:7418238-7418521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):51, 115

               
               
               Conread position:29-317
               
               
               Cow position:chr16:13307009-13306723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 109

               
               
               Conread position:29-322
               
               
               Cow position:chr16:5896273-5896565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:30-286
               
               
               Cow position:chr16:42345748-42345498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:30-287
               
               
               Cow position:chr16:22919340-22919584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:30-309
               
               
               Cow position:chr16:5363751-5364040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:30-322
               
               
               Cow position:chr16:18757985-18757689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:31-301
               
               
               Cow position:chr16:39474281-39474022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:32-192
               
               
               Cow position:chr16:35168586-35168752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:32-224
               
               
               Cow position:chr16:42777824-42778018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:32-225
               
               
               Cow position:chr16:12085920-12085740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:32-226
               
               
               Cow position:chr16:50532921-50533109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:32-254
               
               
               Cow position:chr16:16552419-16552645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:32-265
               
               
               Cow position:chr16:31122388-31122155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:32-276
               
               
               Cow position:chr16:3246349-3246099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:32-276
               
               
               Cow position:chr16:11102967-11102715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:32-277
               
               
               Cow position:chr16:32781223-32781470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:32-277
               
               
               Cow position:chr16:41697230-41696985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:32-281
               
               
               Cow position:chr16:10148134-10148393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:32-284
               
               
               Cow position:chr16:4699123-4698874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-286
               
               
               Cow position:chr16:48493036-48493297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:32-287
               
               
               Cow position:chr16:42340053-42340313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:32-292
               
               
               Cow position:chr16:20069685-20069954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:32-294
               
               
               Cow position:chr16:17288798-17289072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 123

               
               
               Conread position:32-294
               
               
               Cow position:chr16:52133658-52133394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:32-295
               
               
               Cow position:chr16:17982285-17982020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 174

               
               
               Conread position:32-295
               
               
               Cow position:chr16:48385543-48385279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-297
               
               
               Cow position:chr16:13713055-13712804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:32-297
               
               
               Cow position:chr16:42734156-42733884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:32-297
               
               
               Cow position:chr16:49126328-49126058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-298
               
               
               Cow position:chr16:14758589-14758863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):26, 174

               
               
               Conread position:32-298
               
               
               Cow position:chr16:25839476-25839750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:32-298
               
               
               Cow position:chr16:40562088-40562359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-298
               
               
               Cow position:chr16:42078983-42078717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-301
               
               
               Cow position:chr16:7504945-7505215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-301
               
               
               Cow position:chr16:33704664-33704937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:32-301
               
               
               Cow position:chr16:43105656-43105384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:32-301
               
               
               Cow position:chr16:48006630-48006360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:32-301
               
               
               Cow position:chr16:52169923-52170186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):112, 12

               
               
               Conread position:32-302
               
               
               Cow position:chr16:19643746-19644020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:32-302
               
               
               Cow position:chr16:45677844-45678111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 49

               
               
               Conread position:32-302
               
               
               Cow position:chr16:45813844-45813567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:32-303
               
               
               Cow position:chr16:38243805-38243530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:32-305
               
               
               Cow position:chr16:29557770-29557490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:32-306
               
               
               Cow position:chr16:17945379-17945659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:32-306
               
               
               Cow position:chr16:22804734-22804464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:32-306
               
               
               Cow position:chr16:23472604-23472883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:32-306
               
               
               Cow position:chr16:48191144-48190877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:32-310
               
               
               Cow position:chr16:18354095-18353819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:32-311
               
               
               Cow position:chr16:5636446-5636725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):48, 110

               
               
               Conread position:32-311
               
               
               Cow position:chr16:19408659-19408391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 107

               
               
               Conread position:32-311
               
               
               Cow position:chr16:31348910-31348625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-314
               
               
               Cow position:chr16:11957727-11957433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:32-314
               
               
               Cow position:chr16:14242229-14242513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):52, 117

               
               
               Conread position:32-314
               
               
               Cow position:chr16:14685532-14685246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-314
               
               
               Cow position:chr16:26649772-26649487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-314
               
               
               Cow position:chr16:41689553-41689836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:32-314
               
               
               Cow position:chr16:51500791-51501073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-314
               
               
               Cow position:chr16:52275273-52274990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:32-316
               
               
               Cow position:chr16:2223546-2223255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:32-318
               
               
               Cow position:chr16:20025304-20025588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-320
               
               
               Cow position:chr16:14106503-14106787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 93

               
               
               Conread position:32-320
               
               
               Cow position:chr16:50289006-50289294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 110

               
               
               Conread position:32-321
               
               
               Cow position:chr16:33198577-33198286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:32-321
               
               
               Cow position:chr16:35758069-35758348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:32-322
               
               
               Cow position:chr16:3303889-3304181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:32-322
               
               
               Cow position:chr16:7665492-7665785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:32-322
               
               
               Cow position:chr16:7702392-7702669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:32-322
               
               
               Cow position:chr16:8366963-8366679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):221, 69

               
               
               Conread position:32-322
               
               
               Cow position:chr16:16597423-16597704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:32-322
               
               
               Cow position:chr16:17142793-17143083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:32-322
               
               
               Cow position:chr16:25386838-25387119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr16:33645872-33646160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:32-322
               
               
               Cow position:chr16:43308708-43308415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:32-322
               
               
               Cow position:chr16:45456814-45457112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:32-322
               
               
               Cow position:chr16:47820431-47820718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:33-224
               
               
               Cow position:chr16:53037765-53037582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:33-240
               
               
               Cow position:chr16:33507925-33508142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:33-270
               
               
               Cow position:chr16:50417825-50417596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:33-282
               
               
               Cow position:chr16:54679527-54679777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:33-294
               
               
               Cow position:chr16:8323124-8322860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:33-297
               
               
               Cow position:chr16:30037133-30036863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 170

               
               
               Conread position:33-301
               
               
               Cow position:chr16:11806534-11806803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:33-301
               
               
               Cow position:chr16:22380497-22380223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:33-302
               
               
               Cow position:chr16:32970220-32969949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:33-302
               
               
               Cow position:chr16:38708972-38708703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:33-305
               
               
               Cow position:chr16:238124-238402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:33-305
               
               
               Cow position:chr16:7549826-7550101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:33-310
               
               
               Cow position:chr16:56875791-56875524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:33-314
               
               
               Cow position:chr16:14568623-14568346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:33-322
               
               
               Cow position:chr16:10592293-10592588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:33-322
               
               
               Cow position:chr16:12320080-12320368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:33-322
               
               
               Cow position:chr16:43275880-43276175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 126

               
               
               Conread position:33-322
               
               
               Cow position:chr16:49229913-49229625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:34-248
               
               
               Cow position:chr16:13752265-13752054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:34-295
               
               
               Cow position:chr16:3633972-3634241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:34-298
               
               
               Cow position:chr16:47964956-47964689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 105

               
               
               Conread position:34-314
               
               
               Cow position:chr16:9985527-9985249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 50

               
               
               Conread position:34-314
               
               
               Cow position:chr16:48095902-48095624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:34-321
               
               
               Cow position:chr16:8240006-8239719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:35-197
               
               
               Cow position:chr16:16424743-16424582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:35-240
               
               
               Cow position:chr16:8279926-8279722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:35-277
               
               
               Cow position:chr16:27659883-27659639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:35-282
               
               
               Cow position:chr16:16096596-16096850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 138

               
               
               Conread position:35-292
               
               
               Cow position:chr16:48494693-48494432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:35-298
               
               
               Cow position:chr16:51113017-51112752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:35-300
               
               
               Cow position:chr16:54579030-54579296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:35-306
               
               
               Cow position:chr16:4857236-4856966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 101

               
               
               Conread position:35-310
               
               
               Cow position:chr16:29608379-29608649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:35-311
               
               
               Cow position:chr16:39172294-39172007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:35-314
               
               
               Cow position:chr16:18205821-18206100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:35-322
               
               
               Cow position:chr16:33054606-33054327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):257, 32

               
               
               Conread position:35-322
               
               
               Cow position:chr16:42092523-42092231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 73

               
               
               Conread position:36-228
               
               
               Cow position:chr16:11568256-11568065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:36-285
               
               
               Cow position:chr16:54710172-54709925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:36-302
               
               
               Cow position:chr16:31079236-31078959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:36-322
               
               
               Cow position:chr16:9933020-9933305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:36-322
               
               
               Cow position:chr16:32302131-32301858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:37-309
               
               
               Cow position:chr16:50282563-50282293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 87

               
               
               Conread position:37-314
               
               
               Cow position:chr16:27701377-27701118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:37-314
               
               
               Cow position:chr16:41578088-41578371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:37-322
               
               
               Cow position:chr16:9904955-9905241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:38-288
               
               
               Cow position:chr16:571050-570802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 144

               
               
               Conread position:38-311
               
               
               Cow position:chr16:17282528-17282798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:39-312
               
               
               Cow position:chr16:8193314-8193594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:41-322
               
               
               Cow position:chr16:33267582-33267866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:42-297
               
               
               Cow position:chr16:47518705-47518973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:42-301
               
               
               Cow position:chr16:44584570-44584307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:42-322
               
               
               Cow position:chr16:40446119-40446413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 182

               
               
               Conread position:43-277
               
               
               Cow position:chr16:48146789-48146552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:43-295
               
               
               Cow position:chr16:36203749-36203491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:43-315
               
               
               Cow position:chr16:31117746-31117470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:44-244
               
               
               Cow position:chr16:45753581-45753383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):101, 176

               
               
               Conread position:44-302
               
               
               Cow position:chr16:23730056-23729785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:44-302
               
               
               Cow position:chr16:25170258-25170526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:45-293
               
               
               Cow position:chr16:45554313-45554566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:45-321
               
               
               Cow position:chr16:8737935-8738211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:46-322
               
               
               Cow position:chr16:23955955-23955683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:49-314
               
               
               Cow position:chr16:11082883-11083141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:50-277
               
               
               Cow position:chr16:39402123-39401909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:53-287
               
               
               Cow position:chr16:21762093-21761854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:54-284
               
               
               Cow position:chr16:55233574-55233796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):225, 46

               
               
               Conread position:56-322
               
               
               Cow position:chr16:34754079-34753808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:57-225
               
               
               Cow position:chr16:1725195-1725021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 160

               
               
               Conread position:57-288
               
               
               Cow position:chr16:22206958-22207198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):29, 175

               
               
               Conread position:57-302
               
               
               Cow position:chr16:40333444-40333194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:60-287
               
               
               Cow position:chr16:54226713-54226483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:61-280
               
               
               Cow position:chr16:11939928-11940147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:64-302
               
               
               Cow position:chr16:56796776-56796534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:65-320
               
               
               Cow position:chr16:45121929-45122185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:67-322
               
               
               Cow position:chr16:22327401-22327664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:68-284
               
               
               Cow position:chr16:40514587-40514366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:68-302
               
               
               Cow position:chr16:30305916-30305682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:69-277
               
               
               Cow position:chr16:50382634-50382429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:69-322
               
               
               Cow position:chr16:31880861-31880607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:70-308
               
               
               Cow position:chr16:40700828-40700599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:71-302
               
               
               Cow position:chr16:44210660-44210426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:74-301
               
               
               Cow position:chr16:21039927-21040157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:85-309
               
               
               Cow position:chr16:17135143-17134922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):221, 30

               
               
               Conread position:86-301
               
               
               Cow position:chr16:19052551-19052766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:88-322
               
               
               Cow position:chr16:17135649-17135882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):189, 49

               
               
               Conread position:92-302
               
               
               Cow position:chr16:45785665-45785869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:94-272
               
               
               Cow position:chr16:16570842-16571014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:94-272
               
               
               Cow position:chr16:50370523-50370696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-276
               
               
               Cow position:chr16:50667213-50667397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:94-277
               
               
               Cow position:chr16:38091297-38091116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-282
               
               
               Cow position:chr16:16933046-16933231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:94-282
               
               
               Cow position:chr16:42240977-42241159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:94-298
               
               
               Cow position:chr16:22772905-22773106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:94-298
               
               
               Cow position:chr16:33134869-33135065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr16:8273910-8273707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr16:8530957-8530751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):164, 39

               
               
               Conread position:94-302
               
               
               Cow position:chr16:45731461-45731261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-303
               
               
               Cow position:chr16:48545748-48545954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-305
               
               
               Cow position:chr16:31426271-31426474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-308
               
               
               Cow position:chr16:33869833-33869622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):181, 41

               
               
               Conread position:94-310
               
               
               Cow position:chr16:43674802-43675014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:94-311
               
               
               Cow position:chr16:3114465-3114680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:94-311
               
               
               Cow position:chr16:53792891-53792678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:94-315
               
               
               Cow position:chr16:29527751-29527973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 51

               
               
               Conread position:94-322
               
               
               Cow position:chr16:7619250-7619029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:94-322
               
               
               Cow position:chr16:10032567-10032786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr16:13578934-13578710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr16:29037839-29038062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:94-322
               
               
               Cow position:chr16:42539662-42539435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):183, 59

               
               
               Conread position:94-322
               
               
               Cow position:chr16:44239331-44239571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):129, 39

               
               
               Conread position:94-322
               
               
               Cow position:chr16:46548351-46548117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:94-322
               
               
               Cow position:chr16:56670993-56670765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 77

               
               
               Conread position:95-298
               
               
               Cow position:chr16:16548538-16548737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:95-301
               
               
               Cow position:chr16:11135054-11134851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:95-303
               
               
               Cow position:chr16:9552989-9553188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:100-317
               
               
               Cow position:chr16:56243952-56243740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:101-277
               
               
               Cow position:chr16:32807358-32807186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:101-320
               
               
               Cow position:chr16:8462144-8461937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:102-310
               
               
               Cow position:chr16:7980727-7980928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:104-290
               
               
               Cow position:chr16:34220121-34220306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:104-302
               
               
               Cow position:chr16:31561689-31561887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:104-311
               
               
               Cow position:chr16:496438-496235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):184, 25

               
               
               Conread position:104-322
               
               
               Cow position:chr16:30036172-30036384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):176, 29

               
               
               Conread position:104-322
               
               
               Cow position:chr16:42977400-42977619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:106-302
               
               
               Cow position:chr16:46430213-46430021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:106-308
               
               
               Cow position:chr16:12501221-12501025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:106-311
               
               
               Cow position:chr16:9500456-9500665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:106-311
               
               
               Cow position:chr16:18141389-18141187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:106-320
               
               
               Cow position:chr16:26030945-26030733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:113-299
               
               
               Cow position:chr16:7136402-7136216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:117-271
               
               
               Cow position:chr16:280735-280577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:120-310
               
               
               Cow position:chr16:12010047-12010235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:124-294
               
               
               Cow position:chr16:28396125-28395957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:125-297
               
               
               Cow position:chr16:55945183-55945012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):163, 29

               
               
               Conread position:128-277
               
               
               Cow position:chr16:12133819-12133967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:131-302
               
               
               Cow position:chr16:20824438-20824610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:132-302
               
               
               Cow position:chr16:7723663-7723833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 97

               
               
               Conread position:132-302
               
               
               Cow position:chr16:17292062-17291891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 148

               
               
               Conread position:134-277
               
               
               Cow position:chr16:37401215-37401359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:134-281
               
               
               Cow position:chr16:19815283-19815138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:136-322
               
               
               Cow position:chr16:21370221-21370040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:137-259
               
               
               Cow position:chr16:9597484-9597362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-298
               
               
               Cow position:chr16:7626126-7626287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-322
               
               
               Cow position:chr16:15905283-15905098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-302
               
               
               Cow position:chr16:11584431-11584273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:143-302
               
               
               Cow position:chr16:33235188-33235032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:143-302
               
               
               Cow position:chr16:48613502-48613345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:143-322
               
               
               Cow position:chr16:1582953-1582781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:145-297
               
               
               Cow position:chr16:15715983-15715833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:145-297
               
               
               Cow position:chr16:32893603-32893754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:145-298
               
               
               Cow position:chr16:49860207-49860363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:145-308
               
               
               Cow position:chr16:17460142-17460307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:145-308
               
               
               Cow position:chr16:33530384-33530549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr16:11390311-11390127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:147-306
               
               
               Cow position:chr16:15945279-15945119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:148-302
               
               
               Cow position:chr16:31149356-31149508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:148-314
               
               
               Cow position:chr16:12324432-12324599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:148-315
               
               
               Cow position:chr16:27728237-27728403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:149-314
               
               
               Cow position:chr16:53451684-53451849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-305
               
               
               Cow position:chr16:50286494-50286647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:156-284
               
               
               Cow position:chr16:40540322-40540445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:156-309
               
               
               Cow position:chr16:24591838-24591992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:156-322
               
               
               Cow position:chr16:29026194-29026361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 53

               
               
               Conread position:163-286
               
               
               Cow position:chr16:31046687-31046564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-293
               
               
               Cow position:chr16:31484669-31484538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:163-320
               
               
               Cow position:chr16:12220674-12220829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:166-277
               
               
               Cow position:chr16:48021387-48021498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-295
               
               
               Cow position:chr16:9836777-9836649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:166-301
               
               
               Cow position:chr16:34205068-34204931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:172-301
               
               
               Cow position:chr16:19402760-19402632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:172-302
               
               
               Cow position:chr16:19478763-19478632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr16:16025439-16025589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:174-286
               
               
               Cow position:chr16:41807098-41806986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-311
               
               
               Cow position:chr16:20265559-20265422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:176-322
               
               
               Cow position:chr16:8953673-8953529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:179-290
               
               
               Cow position:chr16:4260671-4260782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:179-290
               
               
               Cow position:chr16:9695616-9695724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:187-305
               
               
               Cow position:chr16:19497002-19496883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 106

               
               
               Conread position:199-310
               
               
               Cow position:chr16:21594062-21593950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:201-309
               
               
               Cow position:chr16:51915601-51915708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:201-310
               
               
               Cow position:chr16:26069781-26069889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:203-321
               
               
               Cow position:chr16:25657135-25657253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:203-322
               
               
               Cow position:chr16:23187577-23187698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:204-320
               
               
               Cow position:chr16:5396783-5396673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1-259
               
               
               Cow position:chr17:3781914-3782172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:1-301
               
               
               Cow position:chr17:9911630-9911928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:1-301
               
               
               Cow position:chr17:27048024-27048327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-306
               
               
               Cow position:chr17:24553873-24554173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-314
               
               
               Cow position:chr17:21003962-21003646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 139

               
               
               Conread position:1-322
               
               
               Cow position:chr17:20780379-20780715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:1-322
               
               
               Cow position:chr17:21739015-21738680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:2-226
               
               
               Cow position:chr17:12059225-12058992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:2-287
               
               
               Cow position:chr17:36331092-36330802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:2-297
               
               
               Cow position:chr17:6423632-6423928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:4-322
               
               
               Cow position:chr17:10432108-10431779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 148

               
               
               Conread position:6-305
               
               
               Cow position:chr17:9746388-9746688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:6-314
               
               
               Cow position:chr17:32993745-32993440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:6-322
               
               
               Cow position:chr17:7803301-7802987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:8-244
               
               
               Cow position:chr17:26818574-26818344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 5

               
               
               Conread position:8-277
               
               
               Cow position:chr17:27142635-27142892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):162, 7

               
               
               Conread position:8-317
               
               
               Cow position:chr17:3577417-3577728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):99, 5

               
               
               Conread position:9-276
               
               
               Cow position:chr17:18860850-18860578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 152

               
               
               Conread position:9-315
               
               
               Cow position:chr17:20072206-20071912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):87, 64

               
               
               Conread position:10-281
               
               
               Cow position:chr17:7760588-7760322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-304
               
               
               Cow position:chr17:17059309-17059597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:10-314
               
               
               Cow position:chr17:32989357-32989660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 124

               
               
               Conread position:10-322
               
               
               Cow position:chr17:24824126-24824434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:11-302
               
               
               Cow position:chr17:24973830-24974116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):217, 9

               
               
               Conread position:11-303
               
               
               Cow position:chr17:12447525-12447225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr17:1493281-1492961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:11-322
               
               
               Cow position:chr17:27795522-27795840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:13-314
               
               
               Cow position:chr17:32348953-32349248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:14-314
               
               
               Cow position:chr17:25611971-25612272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:15-316
               
               
               Cow position:chr17:23246091-23246387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:17-322
               
               
               Cow position:chr17:18146065-18146375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:18-320
               
               
               Cow position:chr17:18201643-18201944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:19-212
               
               
               Cow position:chr17:15333826-15333628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:19-292
               
               
               Cow position:chr17:33658185-33657907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 126

               
               
               Conread position:19-297
               
               
               Cow position:chr17:32471905-32471614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:19-322
               
               
               Cow position:chr17:30713234-30713531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:20-264
               
               
               Cow position:chr17:7654569-7654317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 42

               
               
               Conread position:20-322
               
               
               Cow position:chr17:21325218-21325529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:21-297
               
               
               Cow position:chr17:14003705-14003992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:27-295
               
               
               Cow position:chr17:5423176-5422904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:27-305
               
               
               Cow position:chr17:26000010-26000293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 136

               
               
               Conread position:27-322
               
               
               Cow position:chr17:20090728-20090444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):258, 38

               
               
               Conread position:28-322
               
               
               Cow position:chr17:16371148-16371445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 131

               
               
               Conread position:29-311
               
               
               Cow position:chr17:10459042-10458753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:29-322
               
               
               Cow position:chr17:18473074-18473348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:30-322
               
               
               Cow position:chr17:25514226-25513933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 6

               
               
               Conread position:31-286
               
               
               Cow position:chr17:11368948-11368694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:32-202
               
               
               Cow position:chr17:33290915-33290739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:32-245
               
               
               Cow position:chr17:25541915-25541701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:32-260
               
               
               Cow position:chr17:31231213-31230993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:32-260
               
               
               Cow position:chr17:38646958-38647191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:32-266
               
               
               Cow position:chr17:23563891-23563659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):183, 12

               
               
               Conread position:32-275
               
               
               Cow position:chr17:11172718-11172471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:32-275
               
               
               Cow position:chr17:21243885-21243645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:32-277
               
               
               Cow position:chr17:1040644-1040891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-277
               
               
               Cow position:chr17:5000680-5000441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):138, 74

               
               
               Conread position:32-281
               
               
               Cow position:chr17:9565207-9565451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:32-284
               
               
               Cow position:chr17:20990296-20990034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-286
               
               
               Cow position:chr17:12536570-12536308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-287
               
               
               Cow position:chr17:22806638-22806386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 63

               
               
               Conread position:32-287
               
               
               Cow position:chr17:39857291-39857542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:32-289
               
               
               Cow position:chr17:25502008-25502269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:32-293
               
               
               Cow position:chr17:21335796-21335530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:32-293
               
               
               Cow position:chr17:39736079-39736337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:32-297
               
               
               Cow position:chr17:7142762-7143027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-297
               
               
               Cow position:chr17:27429480-27429732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:32-297
               
               
               Cow position:chr17:29715288-29715036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):106, 45

               
               
               Conread position:32-298
               
               
               Cow position:chr17:1061161-1060877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:32-298
               
               
               Cow position:chr17:1410341-1410069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-298
               
               
               Cow position:chr17:3467665-3467920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:32-298
               
               
               Cow position:chr17:5767812-5768072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):6, 108

               
               
               Conread position:32-298
               
               
               Cow position:chr17:40851881-40852140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 93

               
               
               Conread position:32-300
               
               
               Cow position:chr17:908644-908910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:32-300
               
               
               Cow position:chr17:24004281-24004541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:32-300
               
               
               Cow position:chr17:25616157-25616419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:32-301
               
               
               Cow position:chr17:6318959-6318696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:32-301
               
               
               Cow position:chr17:11832221-11831944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 179

               
               
               Conread position:32-302
               
               
               Cow position:chr17:1063086-1063344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:32-302
               
               
               Cow position:chr17:21115052-21114782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:32-302
               
               
               Cow position:chr17:24787119-24786852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:32-302
               
               
               Cow position:chr17:33288756-33288485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:32-304
               
               
               Cow position:chr17:24821764-24822035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 67

               
               
               Conread position:32-305
               
               
               Cow position:chr17:18592342-18592618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:32-308
               
               
               Cow position:chr17:29157315-29157594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 183

               
               
               Conread position:32-308
               
               
               Cow position:chr17:32366186-32366471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 152

               
               
               Conread position:32-308
               
               
               Cow position:chr17:35126606-35126883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:32-309
               
               
               Cow position:chr17:13244142-13243870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 75

               
               
               Conread position:32-309
               
               
               Cow position:chr17:32273788-32273508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:32-311
               
               
               Cow position:chr17:9117545-9117825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-311
               
               
               Cow position:chr17:11281209-11280919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:32-311
               
               
               Cow position:chr17:17060781-17060500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:32-314
               
               
               Cow position:chr17:6329010-6329297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:32-314
               
               
               Cow position:chr17:6936766-6936497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:32-314
               
               
               Cow position:chr17:12289517-12289223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:32-314
               
               
               Cow position:chr17:24587520-24587808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:32-314
               
               
               Cow position:chr17:25097361-25097638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:32-314
               
               
               Cow position:chr17:32419216-32418932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:32-314
               
               
               Cow position:chr17:36791033-36791312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:32-315
               
               
               Cow position:chr17:12591065-12591354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:32-315
               
               
               Cow position:chr17:30728420-30728689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 33

               
               
               Conread position:32-316
               
               
               Cow position:chr17:10561528-10561820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:32-316
               
               
               Cow position:chr17:27058655-27058370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:32-320
               
               
               Cow position:chr17:4106088-4105804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:32-320
               
               
               Cow position:chr17:4121824-4121539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 101

               
               
               Conread position:32-320
               
               
               Cow position:chr17:11664690-11664394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:32-320
               
               
               Cow position:chr17:20993142-20992855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:32-321
               
               
               Cow position:chr17:15102986-15102705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 95

               
               
               Conread position:32-321
               
               
               Cow position:chr17:32279007-32278720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-321
               
               
               Cow position:chr17:32280565-32280852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr17:7697955-7698239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr17:7810836-7810562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:32-322
               
               
               Cow position:chr17:9697800-9697495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 272

               
               
               Conread position:32-322
               
               
               Cow position:chr17:11618482-11618772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:32-322
               
               
               Cow position:chr17:18109188-18108901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:32-322
               
               
               Cow position:chr17:20157509-20157793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:32-322
               
               
               Cow position:chr17:20884421-20884713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-322
               
               
               Cow position:chr17:20932227-20932518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr17:25901095-25901393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr17:31037482-31037191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr17:32027560-32027262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr17:35339017-35338729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:33-272
               
               
               Cow position:chr17:3503481-3503723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:33-276
               
               
               Cow position:chr17:4300021-4299783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:33-282
               
               
               Cow position:chr17:24580397-24580143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:33-295
               
               
               Cow position:chr17:4601645-4601386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:33-298
               
               
               Cow position:chr17:13922378-13922655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:33-302
               
               
               Cow position:chr17:23101308-23101047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:33-308
               
               
               Cow position:chr17:4225594-4225323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):243, 82

               
               
               Conread position:33-314
               
               
               Cow position:chr17:1634590-1634308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:33-314
               
               
               Cow position:chr17:11215330-11215049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:33-322
               
               
               Cow position:chr17:14652881-14652591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 116

               
               
               Conread position:33-322
               
               
               Cow position:chr17:21973234-21972942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):69, 118

               
               
               Conread position:33-322
               
               
               Cow position:chr17:28285131-28284847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:33-322
               
               
               Cow position:chr17:28468035-28468309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:34-275
               
               
               Cow position:chr17:5006587-5006343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:34-286
               
               
               Cow position:chr17:41892164-41891905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:34-287
               
               
               Cow position:chr17:1562871-1562630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:34-301
               
               
               Cow position:chr17:35573663-35573923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:34-303
               
               
               Cow position:chr17:12325847-12325592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:34-305
               
               
               Cow position:chr17:8079217-8079489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:34-306
               
               
               Cow position:chr17:11215991-11215718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 112

               
               
               Conread position:34-322
               
               
               Cow position:chr17:8837049-8836763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:35-296
               
               
               Cow position:chr17:29084091-29084343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):244, 65

               
               
               Conread position:35-298
               
               
               Cow position:chr17:26764918-26765191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:35-298
               
               
               Cow position:chr17:33933847-33933576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 111

               
               
               Conread position:35-305
               
               
               Cow position:chr17:34751504-34751230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:35-311
               
               
               Cow position:chr17:15340851-15340571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 64

               
               
               Conread position:35-314
               
               
               Cow position:chr17:11912596-11912320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:35-315
               
               
               Cow position:chr17:25128447-25128168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 105

               
               
               Conread position:35-318
               
               
               Cow position:chr17:30665171-30665461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):29, 116

               
               
               Conread position:35-320
               
               
               Cow position:chr17:34079202-34078925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:36-297
               
               
               Cow position:chr17:18495618-18495353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 141

               
               
               Conread position:37-298
               
               
               Cow position:chr17:17406042-17406303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 80

               
               
               Conread position:37-322
               
               
               Cow position:chr17:9853893-9854167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:38-302
               
               
               Cow position:chr17:36864535-36864804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:38-322
               
               
               Cow position:chr17:32138511-32138231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:39-297
               
               
               Cow position:chr17:265581-265837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 96

               
               
               Conread position:41-308
               
               
               Cow position:chr17:6848713-6848973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):237, 66

               
               
               Conread position:41-314
               
               
               Cow position:chr17:21489717-21489440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:42-293
               
               
               Cow position:chr17:30718511-30718255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:43-306
               
               
               Cow position:chr17:40331674-40331940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:43-311
               
               
               Cow position:chr17:21922713-21922454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:43-322
               
               
               Cow position:chr17:9966119-9965837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 95

               
               
               Conread position:44-264
               
               
               Cow position:chr17:23798189-23798414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:44-291
               
               
               Cow position:chr17:33275837-33275589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:44-301
               
               
               Cow position:chr17:23517032-23516772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:44-317
               
               
               Cow position:chr17:27203134-27202859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:46-314
               
               
               Cow position:chr17:20848434-20848709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:48-318
               
               
               Cow position:chr17:21758224-21757951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:52-295
               
               
               Cow position:chr17:38263568-38263326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:53-314
               
               
               Cow position:chr17:22127846-22128108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 75

               
               
               Conread position:55-314
               
               
               Cow position:chr17:9824590-9824852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:56-277
               
               
               Cow position:chr17:40406366-40406591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 85

               
               
               Conread position:57-298
               
               
               Cow position:chr17:2275398-2275638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:60-282
               
               
               Cow position:chr17:25032558-25032330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:60-292
               
               
               Cow position:chr17:12511049-12510815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 173

               
               
               Conread position:62-322
               
               
               Cow position:chr17:40638878-40639134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):46, 189

               
               
               Conread position:64-298
               
               
               Cow position:chr17:22057092-22056860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:64-322
               
               
               Cow position:chr17:3153641-3153383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):44, 168

               
               
               Conread position:65-247
               
               
               Cow position:chr17:21478991-21478805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:67-277
               
               
               Cow position:chr17:40421603-40421818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:69-302
               
               
               Cow position:chr17:1025885-1025653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):101, 83

               
               
               Conread position:69-322
               
               
               Cow position:chr17:3388771-3389019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):5, 40

               
               
               Conread position:71-294
               
               
               Cow position:chr17:39606373-39606594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:83-306
               
               
               Cow position:chr17:7571057-7571279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:85-285
               
               
               Cow position:chr17:40412545-40412738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:85-297
               
               
               Cow position:chr17:33155198-33154984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:85-297
               
               
               Cow position:chr17:33793122-33793330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:85-321
               
               
               Cow position:chr17:34791109-34790873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:85-322
               
               
               Cow position:chr17:36814317-36814550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:86-314
               
               
               Cow position:chr17:21039522-21039741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:92-300
               
               
               Cow position:chr17:45296381-45296579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:93-307
               
               
               Cow position:chr17:31856638-31856846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:94-305
               
               
               Cow position:chr17:25800914-25800710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):106, 47

               
               
               Conread position:94-306
               
               
               Cow position:chr17:5372561-5372351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-320
               
               
               Cow position:chr17:2810594-2810818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:94-321
               
               
               Cow position:chr17:32333124-32332905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr17:9940651-9940888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr17:35051575-35051805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 43

               
               
               Conread position:95-302
               
               
               Cow position:chr17:22051623-22051418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:95-305
               
               
               Cow position:chr17:18934226-18934432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:99-298
               
               
               Cow position:chr17:12959078-12959274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:101-302
               
               
               Cow position:chr17:33164842-33164647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:101-320
               
               
               Cow position:chr17:24750892-24751100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):115, 29

               
               
               Conread position:104-298
               
               
               Cow position:chr17:18848183-18847990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:104-300
               
               
               Cow position:chr17:8815168-8815362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:104-301
               
               
               Cow position:chr17:17044355-17044162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr17:26575253-26575037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:104-322
               
               
               Cow position:chr17:29995460-29995250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:106-263
               
               
               Cow position:chr17:7851067-7851220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:106-266
               
               
               Cow position:chr17:7577570-7577733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:106-271
               
               
               Cow position:chr17:22048811-22048647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:106-283
               
               
               Cow position:chr17:16158471-16158644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:106-299
               
               
               Cow position:chr17:25126332-25126518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:106-302
               
               
               Cow position:chr17:22017107-22016917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:106-311
               
               
               Cow position:chr17:28814519-28814309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:106-314
               
               
               Cow position:chr17:25473300-25473096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:107-306
               
               
               Cow position:chr17:24163018-24163212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:108-282
               
               
               Cow position:chr17:11478747-11478921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:108-293
               
               
               Cow position:chr17:34836152-34836334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:113-290
               
               
               Cow position:chr17:30212872-30213046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:113-322
               
               
               Cow position:chr17:8823296-8823508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:114-277
               
               
               Cow position:chr17:9932314-9932153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:114-314
               
               
               Cow position:chr17:37341053-37340846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:116-311
               
               
               Cow position:chr17:20874387-20874576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:118-302
               
               
               Cow position:chr17:25511234-25511415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:121-322
               
               
               Cow position:chr17:21466269-21466073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:122-318
               
               
               Cow position:chr17:21472185-21472002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:125-305
               
               
               Cow position:chr17:43315291-43315114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):166, 71

               
               
               Conread position:126-321
               
               
               Cow position:chr17:7959173-7959371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:127-311
               
               
               Cow position:chr17:21788660-21788479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:130-263
               
               
               Cow position:chr17:565379-565245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:131-277
               
               
               Cow position:chr17:27666105-27665960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:132-300
               
               
               Cow position:chr17:17034952-17035119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:132-322
               
               
               Cow position:chr17:37816189-37816005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:137-314
               
               
               Cow position:chr17:27440183-27440358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):131, 72

               
               
               Conread position:137-314
               
               
               Cow position:chr17:40276747-40276926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 70

               
               
               Conread position:141-314
               
               
               Cow position:chr17:26072750-26072573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr17:15354943-15355119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:144-307
               
               
               Cow position:chr17:42150405-42150566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:144-322
               
               
               Cow position:chr17:18766983-18766799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:144-322
               
               
               Cow position:chr17:31990947-31991124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:145-306
               
               
               Cow position:chr17:11306224-11306384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr17:29076068-29075902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):142, 120

               
               
               Conread position:146-314
               
               
               Cow position:chr17:946373-946541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-309
               
               
               Cow position:chr17:3097640-3097479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:152-302
               
               
               Cow position:chr17:13236318-13236170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 126

               
               
               Conread position:153-311
               
               
               Cow position:chr17:5053698-5053851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:154-293
               
               
               Cow position:chr17:20392175-20392311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:154-297
               
               
               Cow position:chr17:37430481-37430338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 52

               
               
               Conread position:154-322
               
               
               Cow position:chr17:20929265-20929429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:158-311
               
               
               Cow position:chr17:5743263-5743110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:158-311
               
               
               Cow position:chr17:22074470-22074317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:160-299
               
               
               Cow position:chr17:42697324-42697464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:163-287
               
               
               Cow position:chr17:39485795-39485919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:163-299
               
               
               Cow position:chr17:42744489-42744626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:163-311
               
               
               Cow position:chr17:9713309-9713161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):71, 66

               
               
               Conread position:163-316
               
               
               Cow position:chr17:25193494-25193339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr17:30501782-30501627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 122

               
               
               Conread position:167-314
               
               
               Cow position:chr17:21718960-21718812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:168-301
               
               
               Cow position:chr17:27303930-27303798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:168-302
               
               
               Cow position:chr17:12019507-12019378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:168-308
               
               
               Cow position:chr17:21268335-21268476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:169-293
               
               
               Cow position:chr17:34836069-34835947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:172-311
               
               
               Cow position:chr17:968926-969066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):109, 48

               
               
               Conread position:172-316
               
               
               Cow position:chr17:12215216-12215075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:173-322
               
               
               Cow position:chr17:21676933-21677076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr17:24895116-24895265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-286
               
               
               Cow position:chr17:44234294-44234406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-322
               
               
               Cow position:chr17:3178416-3178272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:175-293
               
               
               Cow position:chr17:15728518-15728638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:178-314
               
               
               Cow position:chr17:10016327-10016462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 67

               
               
               Conread position:178-320
               
               
               Cow position:chr17:26225075-26225211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:179-314
               
               
               Cow position:chr17:35043875-35043741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:180-294
               
               
               Cow position:chr17:12963557-12963447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:180-322
               
               
               Cow position:chr17:24789871-24790013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 125

               
               
               Conread position:181-314
               
               
               Cow position:chr17:25348419-25348552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:181-322
               
               
               Cow position:chr17:9078170-9078028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):124, 103

               
               
               Conread position:187-300
               
               
               Cow position:chr17:42259271-42259385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:188-310
               
               
               Cow position:chr17:21206445-21206325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:199-321
               
               
               Cow position:chr17:30737512-30737636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:200-302
               
               
               Cow position:chr17:19544162-19544059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:203-306
               
               
               Cow position:chr17:9260539-9260438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:203-311
               
               
               Cow position:chr17:10510399-10510291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-277
               
               
               Cow position:chr18:10954270-10954539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-297
               
               
               Cow position:chr18:36458726-36459024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:1-302
               
               
               Cow position:chr18:10977415-10977113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-314
               
               
               Cow position:chr18:247891-247586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:4-275
               
               
               Cow position:chr18:33299696-33299975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:5-296
               
               
               Cow position:chr18:51406114-51405819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:6-291
               
               
               Cow position:chr18:35012509-35012230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:6-314
               
               
               Cow position:chr18:18919163-18918852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:6-322
               
               
               Cow position:chr18:45104637-45104318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):55, 6

               
               
               Conread position:6-322
               
               
               Cow position:chr18:51756892-51757205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:7-311
               
               
               Cow position:chr18:25984772-25984466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:7-321
               
               
               Cow position:chr18:37002437-37002749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:8-270
               
               
               Cow position:chr18:51211988-51212249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:8-281
               
               
               Cow position:chr18:54111021-54111285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):112, 5

               
               
               Conread position:8-298
               
               
               Cow position:chr18:29065572-29065291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):107, 5

               
               
               Conread position:9-298
               
               
               Cow position:chr18:56159260-56159555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:9-314
               
               
               Cow position:chr18:11867143-11867449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:9-322
               
               
               Cow position:chr18:39662580-39662892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:10-282
               
               
               Cow position:chr18:21741007-21740737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):94, 131

               
               
               Conread position:10-311
               
               
               Cow position:chr18:25647449-25647140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 141

               
               
               Conread position:11-311
               
               
               Cow position:chr18:36230916-36230620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:13-311
               
               
               Cow position:chr18:51392836-51392536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 137

               
               
               Conread position:18-280
               
               
               Cow position:chr18:45570826-45571088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:19-273
               
               
               Cow position:chr18:15025486-15025744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:19-314
               
               
               Cow position:chr18:29958345-29958062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:19-322
               
               
               Cow position:chr18:9066511-9066811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:23-301
               
               
               Cow position:chr18:34527283-34526999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:26-302
               
               
               Cow position:chr18:12023816-12023540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 123

               
               
               Conread position:26-322
               
               
               Cow position:chr18:9365735-9366033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):51, 126

               
               
               Conread position:27-270
               
               
               Cow position:chr18:55789170-55788930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:27-272
               
               
               Cow position:chr18:13507919-13507672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:27-276
               
               
               Cow position:chr18:4540059-4539810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:27-278
               
               
               Cow position:chr18:3370718-3370974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:27-287
               
               
               Cow position:chr18:50082430-50082174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:27-298
               
               
               Cow position:chr18:5766232-5766507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 120

               
               
               Conread position:27-298
               
               
               Cow position:chr18:19273278-19273002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:27-298
               
               
               Cow position:chr18:32883126-32883395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:27-301
               
               
               Cow position:chr18:48451872-48452165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:27-310
               
               
               Cow position:chr18:7076785-7077060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:27-310
               
               
               Cow position:chr18:36201806-36201522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:27-322
               
               
               Cow position:chr18:22056048-22055751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:28-272
               
               
               Cow position:chr18:3166670-3166421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:29-270
               
               
               Cow position:chr18:23476854-23476621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:29-284
               
               
               Cow position:chr18:52877201-52877441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:29-294
               
               
               Cow position:chr18:38686916-38687170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:29-297
               
               
               Cow position:chr18:44262448-44262723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:29-302
               
               
               Cow position:chr18:11183767-11184038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:29-320
               
               
               Cow position:chr18:8299835-8300134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:31-298
               
               
               Cow position:chr18:19193542-19193271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):77, 119

               
               
               Conread position:32-230
               
               
               Cow position:chr18:6103272-6103071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-235
               
               
               Cow position:chr18:46436933-46436734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:32-246
               
               
               Cow position:chr18:5487075-5487284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:32-252
               
               
               Cow position:chr18:25206365-25206140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-255
               
               
               Cow position:chr18:11618303-11618519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:32-258
               
               
               Cow position:chr18:5578131-5578361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:32-269
               
               
               Cow position:chr18:55461883-55461644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):72, 101

               
               
               Conread position:32-270
               
               
               Cow position:chr18:4381116-4381359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:32-270
               
               
               Cow position:chr18:29356802-29356558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-272
               
               
               Cow position:chr18:55119706-55119943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:32-273
               
               
               Cow position:chr18:18340143-18339880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:32-275
               
               
               Cow position:chr18:26938810-26939054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:32-277
               
               
               Cow position:chr18:49100545-49100295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-278
               
               
               Cow position:chr18:33407439-33407692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:32-280
               
               
               Cow position:chr18:2619371-2619137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:32-280
               
               
               Cow position:chr18:44802063-44801813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:32-282
               
               
               Cow position:chr18:6610035-6609773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-286
               
               
               Cow position:chr18:20127278-20127022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:32-286
               
               
               Cow position:chr18:47525224-47525490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:32-287
               
               
               Cow position:chr18:56172192-56171931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 174

               
               
               Conread position:32-294
               
               
               Cow position:chr18:23766588-23766318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-295
               
               
               Cow position:chr18:11322421-11322687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:32-296
               
               
               Cow position:chr18:5072588-5072320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 52

               
               
               Conread position:32-296
               
               
               Cow position:chr18:25282728-25282463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-296
               
               
               Cow position:chr18:29648610-29648875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-296
               
               
               Cow position:chr18:47511823-47512098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 115

               
               
               Conread position:32-297
               
               
               Cow position:chr18:10575933-10576203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:32-297
               
               
               Cow position:chr18:15172857-15173107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):152, 66

               
               
               Conread position:32-297
               
               
               Cow position:chr18:28930805-28930541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:32-297
               
               
               Cow position:chr18:30794259-30794519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:32-297
               
               
               Cow position:chr18:38985516-38985791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-297
               
               
               Cow position:chr18:56191147-56190869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:32-298
               
               
               Cow position:chr18:4673139-4673398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:32-298
               
               
               Cow position:chr18:16686512-16686241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:32-298
               
               
               Cow position:chr18:39434652-39434918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:32-299
               
               
               Cow position:chr18:17005079-17005356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:32-300
               
               
               Cow position:chr18:6881523-6881259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):226, 59

               
               
               Conread position:32-301
               
               
               Cow position:chr18:18369538-18369265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-302
               
               
               Cow position:chr18:9974499-9974231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr18:15517340-15517075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:32-302
               
               
               Cow position:chr18:42432269-42431993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):76, 187

               
               
               Conread position:32-303
               
               
               Cow position:chr18:21195513-21195238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:32-303
               
               
               Cow position:chr18:47517388-47517106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 267

               
               
               Conread position:32-305
               
               
               Cow position:chr18:27109472-27109190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:32-305
               
               
               Cow position:chr18:55505231-55505504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:32-306
               
               
               Cow position:chr18:33007885-33008168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):71, 118

               
               
               Conread position:32-307
               
               
               Cow position:chr18:22121056-22120782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 86

               
               
               Conread position:32-308
               
               
               Cow position:chr18:31082502-31082245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:32-309
               
               
               Cow position:chr18:21102949-21102670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:32-311
               
               
               Cow position:chr18:19896631-19896344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:32-311
               
               
               Cow position:chr18:51190766-51190488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):67, 133

               
               
               Conread position:32-314
               
               
               Cow position:chr18:7649822-7650097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):247, 77

               
               
               Conread position:32-314
               
               
               Cow position:chr18:9010547-9010816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:32-314
               
               
               Cow position:chr18:10904674-10904958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:32-314
               
               
               Cow position:chr18:28101456-28101741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 107

               
               
               Conread position:32-314
               
               
               Cow position:chr18:45904069-45903785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-316
               
               
               Cow position:chr18:12242101-12242383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:32-317
               
               
               Cow position:chr18:21192592-21192306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:32-319
               
               
               Cow position:chr18:42479763-42479476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:32-320
               
               
               Cow position:chr18:43555700-43555404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-322
               
               
               Cow position:chr18:3211696-3211991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 272

               
               
               Conread position:32-322
               
               
               Cow position:chr18:11691583-11691295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-322
               
               
               Cow position:chr18:17391152-17390879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:32-322
               
               
               Cow position:chr18:30360310-30360032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr18:39623623-39623915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:32-322
               
               
               Cow position:chr18:40759040-40759332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):255, 17

               
               
               Conread position:32-322
               
               
               Cow position:chr18:42747418-42747709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr18:46048586-46048864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:32-322
               
               
               Cow position:chr18:55000911-55000626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:33-271
               
               
               Cow position:chr18:4182362-4182121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:33-277
               
               
               Cow position:chr18:50637633-50637400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 67

               
               
               Conread position:33-284
               
               
               Cow position:chr18:47828653-47828900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:33-295
               
               
               Cow position:chr18:48713375-48713642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:33-298
               
               
               Cow position:chr18:4496062-4495790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:33-299
               
               
               Cow position:chr18:38344631-38344900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:33-302
               
               
               Cow position:chr18:18592302-18592571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:33-302
               
               
               Cow position:chr18:22214307-22214586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-311
               
               
               Cow position:chr18:28924008-28923740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:33-318
               
               
               Cow position:chr18:29058668-29058387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:33-322
               
               
               Cow position:chr18:4758198-4757919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:34-266
               
               
               Cow position:chr18:44483928-44483711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:34-276
               
               
               Cow position:chr18:11684815-11685054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:34-277
               
               
               Cow position:chr18:42431780-42431538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:34-286
               
               
               Cow position:chr18:19849929-19849675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:34-294
               
               
               Cow position:chr18:10322631-10322895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 255

               
               
               Conread position:34-301
               
               
               Cow position:chr18:15614033-15613764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:34-301
               
               
               Cow position:chr18:46453048-46452783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:34-302
               
               
               Cow position:chr18:6309910-6310179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:34-306
               
               
               Cow position:chr18:38607050-38607325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:34-311
               
               
               Cow position:chr18:39875432-39875153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:34-322
               
               
               Cow position:chr18:56183768-56184053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):140, 74

               
               
               Conread position:35-207
               
               
               Cow position:chr18:44549087-44548909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:35-276
               
               
               Cow position:chr18:47183455-47183221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:35-297
               
               
               Cow position:chr18:20641663-20641403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:35-308
               
               
               Cow position:chr18:45637569-45637312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:35-322
               
               
               Cow position:chr18:33896600-33896300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:35-322
               
               
               Cow position:chr18:37023725-37023434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:35-322
               
               
               Cow position:chr18:43283930-43283643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:35-322
               
               
               Cow position:chr18:50974468-50974174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:36-302
               
               
               Cow position:chr18:10891343-10891611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:36-306
               
               
               Cow position:chr18:55692646-55692918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:36-308
               
               
               Cow position:chr18:4796800-4797068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:36-312
               
               
               Cow position:chr18:43020562-43020296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:37-276
               
               
               Cow position:chr18:20126135-20126377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 116

               
               
               Conread position:37-277
               
               
               Cow position:chr18:29759874-29760100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):193, 51

               
               
               Conread position:37-293
               
               
               Cow position:chr18:30586390-30586136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 52

               
               
               Conread position:37-297
               
               
               Cow position:chr18:8171255-8170991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:37-304
               
               
               Cow position:chr18:28658079-28657811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:37-311
               
               
               Cow position:chr18:12270340-12270608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:37-322
               
               
               Cow position:chr18:7952031-7952321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 159

               
               
               Conread position:38-298
               
               
               Cow position:chr18:9089531-9089793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:38-300
               
               
               Cow position:chr18:11790764-11791017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:38-320
               
               
               Cow position:chr18:48633623-48633897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:38-322
               
               
               Cow position:chr18:1954759-1954467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 108

               
               
               Conread position:42-306
               
               
               Cow position:chr18:1399517-1399253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:43-302
               
               
               Cow position:chr18:22790236-22789991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:44-284
               
               
               Cow position:chr18:11377205-11377444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:44-322
               
               
               Cow position:chr18:11779496-11779764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:45-300
               
               
               Cow position:chr18:12113539-12113269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 193

               
               
               Conread position:45-321
               
               
               Cow position:chr18:4556331-4556054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 171

               
               
               Conread position:46-232
               
               
               Cow position:chr18:11831967-11832148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:50-276
               
               
               Cow position:chr18:20462851-20462622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:51-308
               
               
               Cow position:chr18:52854893-52855158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):7, 104

               
               
               Conread position:53-322
               
               
               Cow position:chr18:3417019-3417277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):181, 31

               
               
               Conread position:56-297
               
               
               Cow position:chr18:1571388-1571144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 85

               
               
               Conread position:56-303
               
               
               Cow position:chr18:46135591-46135841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:57-290
               
               
               Cow position:chr18:51594952-51594718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:57-322
               
               
               Cow position:chr18:6005645-6005386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):129, 84

               
               
               Conread position:58-277
               
               
               Cow position:chr18:2146731-2146506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:84-302
               
               
               Cow position:chr18:35535268-35535048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:85-278
               
               
               Cow position:chr18:52406585-52406766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:85-322
               
               
               Cow position:chr18:24266526-24266292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:86-297
               
               
               Cow position:chr18:23630721-23630515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:86-322
               
               
               Cow position:chr18:4490017-4489790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:90-318
               
               
               Cow position:chr18:22180894-22180666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:93-297
               
               
               Cow position:chr18:35367293-35367102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):164, 37

               
               
               Conread position:94-293
               
               
               Cow position:chr18:54130439-54130241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:94-295
               
               
               Cow position:chr18:49017397-49017584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr18:10214301-10214092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:94-306
               
               
               Cow position:chr18:29474635-29474845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:94-308
               
               
               Cow position:chr18:19883424-19883637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 48

               
               
               Conread position:94-310
               
               
               Cow position:chr18:16997147-16997360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:94-311
               
               
               Cow position:chr18:52403077-52402868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):186, 127

               
               
               Conread position:94-320
               
               
               Cow position:chr18:23162787-23163005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):194, 42

               
               
               Conread position:94-320
               
               
               Cow position:chr18:49841173-49841395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:94-322
               
               
               Cow position:chr18:24508344-24508113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:95-308
               
               
               Cow position:chr18:2849376-2849163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:95-311
               
               
               Cow position:chr18:4871969-4872170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:95-314
               
               
               Cow position:chr18:51643472-51643258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:96-320
               
               
               Cow position:chr18:34220025-34219798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):134, 41

               
               
               Conread position:96-322
               
               
               Cow position:chr18:25598345-25598122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:99-315
               
               
               Cow position:chr18:5632166-5632377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:99-322
               
               
               Cow position:chr18:47416894-47417111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:101-315
               
               
               Cow position:chr18:49015027-49015230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):175, 36

               
               
               Conread position:102-300
               
               
               Cow position:chr18:11313036-11312840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:104-271
               
               
               Cow position:chr18:15880943-15880772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):145, 29

               
               
               Conread position:104-282
               
               
               Cow position:chr18:20798224-20798406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:104-290
               
               
               Cow position:chr18:31711663-31711476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 33

               
               
               Conread position:104-297
               
               
               Cow position:chr18:32189607-32189414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-302
               
               
               Cow position:chr18:43797049-43796856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):181, 37

               
               
               Conread position:104-302
               
               
               Cow position:chr18:49038364-49038558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:104-311
               
               
               Cow position:chr18:53038731-53038937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):152, 33

               
               
               Conread position:104-314
               
               
               Cow position:chr18:22569163-22568956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):195, 29

               
               
               Conread position:104-322
               
               
               Cow position:chr18:34834398-34834607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):172, 37

               
               
               Conread position:106-275
               
               
               Cow position:chr18:42751704-42751532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 27

               
               
               Conread position:106-322
               
               
               Cow position:chr18:3158695-3158472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:107-277
               
               
               Cow position:chr18:49981542-49981366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:110-310
               
               
               Cow position:chr18:4624237-4624044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:113-311
               
               
               Cow position:chr18:9176814-9177006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:114-282
               
               
               Cow position:chr18:17660643-17660482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:116-322
               
               
               Cow position:chr18:52413879-52414085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:120-308
               
               
               Cow position:chr18:14225308-14225498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:124-299
               
               
               Cow position:chr18:27388508-27388678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:124-314
               
               
               Cow position:chr18:22516611-22516425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):147, 9

               
               
               Conread position:125-322
               
               
               Cow position:chr18:31557238-31557046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:127-314
               
               
               Cow position:chr18:6470018-6470203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:128-320
               
               
               Cow position:chr18:37189369-37189183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:129-298
               
               
               Cow position:chr18:24719238-24719407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:131-297
               
               
               Cow position:chr18:41950136-41950294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:131-298
               
               
               Cow position:chr18:18843943-18844110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:132-322
               
               
               Cow position:chr18:24342772-24342968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):146, 15

               
               
               Conread position:133-302
               
               
               Cow position:chr18:47705164-47705333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:133-322
               
               
               Cow position:chr18:33883714-33883900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):172, 14

               
               
               Conread position:135-295
               
               
               Cow position:chr18:50359262-50359425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:136-277
               
               
               Cow position:chr18:25006561-25006420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-302
               
               
               Cow position:chr18:51383463-51383299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:137-315
               
               
               Cow position:chr18:38937755-38937932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:137-322
               
               
               Cow position:chr18:52251923-52251743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:139-282
               
               
               Cow position:chr18:23505266-23505409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr18:33158881-33159054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:143-305
               
               
               Cow position:chr18:19787918-19788081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:143-322
               
               
               Cow position:chr18:47548047-47547868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):168, 112

               
               
               Conread position:144-272
               
               
               Cow position:chr18:21081951-21081824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:144-314
               
               
               Cow position:chr18:50632502-50632334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:145-277
               
               
               Cow position:chr18:16378864-16378996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-297
               
               
               Cow position:chr18:45558088-45558243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr18:49324493-49324329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 65

               
               
               Conread position:145-322
               
               
               Cow position:chr18:52649406-52649228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:146
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr18:56183562-56183389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:146-320
               
               
               Cow position:chr18:2773450-2773278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:146-320
               
               
               Cow position:chr18:2776953-2776781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:147-298
               
               
               Cow position:chr18:46072406-46072557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-306
               
               
               Cow position:chr18:11754072-11754232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:147-306
               
               
               Cow position:chr18:44917700-44917857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:151-303
               
               
               Cow position:chr18:15809853-15809703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):130, 64

               
               
               Conread position:154-280
               
               
               Cow position:chr18:41511555-41511426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:154-308
               
               
               Cow position:chr18:2765203-2765352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:163-297
               
               
               Cow position:chr18:45985666-45985533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:163-318
               
               
               Cow position:chr18:11672002-11672164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):121, 62

               
               
               Conread position:163-321
               
               
               Cow position:chr18:29080766-29080920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr18:51178769-51178610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-296
               
               
               Cow position:chr18:47410505-47410635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-302
               
               
               Cow position:chr18:2794008-2793877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:167-314
               
               
               Cow position:chr18:48407702-48407848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:169-322
               
               
               Cow position:chr18:41724853-41724700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 129

               
               
               Conread position:170-311
               
               
               Cow position:chr18:35786022-35786163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-322
               
               
               Cow position:chr18:8208457-8208312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:174-301
               
               
               Cow position:chr18:28322627-28322753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:174-322
               
               
               Cow position:chr18:3098062-3097914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-300
               
               
               Cow position:chr18:34444762-34444640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:178-298
               
               
               Cow position:chr18:49603069-49602949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-314
               
               
               Cow position:chr18:50004726-50004595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:184-311
               
               
               Cow position:chr18:42978665-42978538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:187-295
               
               
               Cow position:chr18:49197402-49197510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-314
               
               
               Cow position:chr18:81962-82082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:199-302
               
               
               Cow position:chr18:21143969-21143864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:200-311
               
               
               Cow position:chr18:23027173-23027060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1-258
               
               
               Cow position:chr19:4329230-4328977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-275
               
               
               Cow position:chr19:43440980-43441261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:1-277
               
               
               Cow position:chr19:20310817-20310544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:1-282
               
               
               Cow position:chr19:4503033-4503320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:1-302
               
               
               Cow position:chr19:268166-268476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):23, 147

               
               
               Conread position:1-312
               
               
               Cow position:chr19:13316595-13316293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 135

               
               
               Conread position:2-226
               
               
               Cow position:chr19:13730021-13729792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:2-276
               
               
               Cow position:chr19:42663998-42663734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:2-277
               
               
               Cow position:chr19:52773362-52773076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):101, 88

               
               
               Conread position:2-298
               
               
               Cow position:chr19:42694811-42695110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:2-302
               
               
               Cow position:chr19:10545886-10545585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:4-252
               
               
               Cow position:chr19:25999447-25999688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 127

               
               
               Conread position:6-287
               
               
               Cow position:chr19:24062110-24062382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-296
               
               
               Cow position:chr19:5656281-5656012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:6-298
               
               
               Cow position:chr19:33033617-33033323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-304
               
               
               Cow position:chr19:7053508-7053218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:6-306
               
               
               Cow position:chr19:13129692-13129994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 134

               
               
               Conread position:6-307
               
               
               Cow position:chr19:10213489-10213794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 133

               
               
               Conread position:6-322
               
               
               Cow position:chr19:386962-387270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:9-314
               
               
               Cow position:chr19:22043527-22043224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:9-322
               
               
               Cow position:chr19:20622475-20622790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:9-322
               
               
               Cow position:chr19:32506293-32505975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:10-263
               
               
               Cow position:chr19:2734276-2734531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-276
               
               
               Cow position:chr19:15863216-15862956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:10-320
               
               
               Cow position:chr19:21198963-21199281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:10-322
               
               
               Cow position:chr19:2577397-2577693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:10-322
               
               
               Cow position:chr19:31846721-31846412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:11-190
               
               
               Cow position:chr19:43702878-43702701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:11-294
               
               
               Cow position:chr19:46454677-46454958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 6

               
               
               Conread position:11-298
               
               
               Cow position:chr19:6049843-6049560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-301
               
               
               Cow position:chr19:41946012-41946304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:11-305
               
               
               Cow position:chr19:17795722-17796019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):94, 134

               
               
               Conread position:11-312
               
               
               Cow position:chr19:30886220-30886525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:13-297
               
               
               Cow position:chr19:8128144-8128420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 52

               
               
               Conread position:13-322
               
               
               Cow position:chr19:53372069-53371762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 137

               
               
               Conread position:20-316
               
               
               Cow position:chr19:31535960-31536257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:24-221
               
               
               Cow position:chr19:18153007-18153204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:25-316
               
               
               Cow position:chr19:33237015-33237309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:27-272
               
               
               Cow position:chr19:990578-990324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 172

               
               
               Conread position:27-286
               
               
               Cow position:chr19:24358388-24358139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:27-297
               
               
               Cow position:chr19:19919620-19919347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):81, 130

               
               
               Conread position:27-311
               
               
               Cow position:chr19:46094799-46094507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 119

               
               
               Conread position:27-321
               
               
               Cow position:chr19:17020134-17020418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:28-297
               
               
               Cow position:chr19:20935596-20935874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:28-311
               
               
               Cow position:chr19:7404538-7404246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:28-314
               
               
               Cow position:chr19:23222478-23222760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:29-294
               
               
               Cow position:chr19:35762409-35762138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:29-302
               
               
               Cow position:chr19:3216861-3217133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:29-302
               
               
               Cow position:chr19:30471499-30471234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:29-303
               
               
               Cow position:chr19:39485162-39485440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):59, 120

               
               
               Conread position:29-308
               
               
               Cow position:chr19:24144864-24145152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:29-318
               
               
               Cow position:chr19:22134302-22134011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:30-292
               
               
               Cow position:chr19:24669520-24669268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:30-322
               
               
               Cow position:chr19:1664346-1664050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:30-322
               
               
               Cow position:chr19:5913113-5912824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:32-207
               
               
               Cow position:chr19:32450928-32451110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:32-228
               
               
               Cow position:chr19:33823163-33823365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:32-231
               
               
               Cow position:chr19:37646989-37646787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:32-253
               
               
               Cow position:chr19:42240445-42240224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:32-274
               
               
               Cow position:chr19:30533791-30534021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 37

               
               
               Conread position:32-277
               
               
               Cow position:chr19:8332143-8332395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:32-277
               
               
               Cow position:chr19:21363593-21363342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:32-277
               
               
               Cow position:chr19:26057699-26057451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):151, 99

               
               
               Conread position:32-281
               
               
               Cow position:chr19:40449862-40450117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:32-282
               
               
               Cow position:chr19:20671051-20670806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:32-284
               
               
               Cow position:chr19:7473544-7473800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:32-290
               
               
               Cow position:chr19:3812165-3811911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-290
               
               
               Cow position:chr19:11442827-11443099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:32-290
               
               
               Cow position:chr19:36059782-36060046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:32-293
               
               
               Cow position:chr19:6531737-6531996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-293
               
               
               Cow position:chr19:47671596-47671855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 77

               
               
               Conread position:32-293
               
               
               Cow position:chr19:53657743-53658004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 51

               
               
               Conread position:32-294
               
               
               Cow position:chr19:39751331-39751588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:32-295
               
               
               Cow position:chr19:15719771-15719505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:32-295
               
               
               Cow position:chr19:18786474-18786209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:32-295
               
               
               Cow position:chr19:27612322-27612058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:32-295
               
               
               Cow position:chr19:34620184-34619916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:32-295
               
               
               Cow position:chr19:35107375-35107639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:32-296
               
               
               Cow position:chr19:9542047-9541787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:32-296
               
               
               Cow position:chr19:14592900-14593171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:32-297
               
               
               Cow position:chr19:23784551-23784304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:32-297
               
               
               Cow position:chr19:39576724-39576452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:32-298
               
               
               Cow position:chr19:1968458-1968200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 48

               
               
               Conread position:32-298
               
               
               Cow position:chr19:22765467-22765737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):76, 183

               
               
               Conread position:32-299
               
               
               Cow position:chr19:33468870-33469138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 113

               
               
               Conread position:32-301
               
               
               Cow position:chr19:7668549-7668815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:32-301
               
               
               Cow position:chr19:17972410-17972143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):70, 57

               
               
               Conread position:32-301
               
               
               Cow position:chr19:22799233-22798959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):29, 116

               
               
               Conread position:32-301
               
               
               Cow position:chr19:26976213-26975949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr19:6516106-6516386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 125

               
               
               Conread position:32-302
               
               
               Cow position:chr19:15068156-15067888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 53

               
               
               Conread position:32-302
               
               
               Cow position:chr19:16096704-16096432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:32-302
               
               
               Cow position:chr19:24760038-24759764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:32-306
               
               
               Cow position:chr19:12698170-12698442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:32-306
               
               
               Cow position:chr19:36722170-36722433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:32-306
               
               
               Cow position:chr19:48722875-48723147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:32-308
               
               
               Cow position:chr19:25652908-25652631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:32-308
               
               
               Cow position:chr19:25807456-25807181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-308
               
               
               Cow position:chr19:35018398-35018119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:32-310
               
               
               Cow position:chr19:10080915-10081201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):33, 259

               
               
               Conread position:32-310
               
               
               Cow position:chr19:25727032-25726754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):57, 81

               
               
               Conread position:32-311
               
               
               Cow position:chr19:8375459-8375174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-312
               
               
               Cow position:chr19:20661566-20661285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:32-312
               
               
               Cow position:chr19:21378623-21378341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:32-312
               
               
               Cow position:chr19:35742008-35742296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:32-314
               
               
               Cow position:chr19:5185399-5185125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:32-314
               
               
               Cow position:chr19:23786039-23786309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:32-314
               
               
               Cow position:chr19:29368247-29368528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:32-314
               
               
               Cow position:chr19:29625752-29626033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:32-314
               
               
               Cow position:chr19:33903576-33903293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-314
               
               
               Cow position:chr19:34287871-34288146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:32-314
               
               
               Cow position:chr19:47453282-47453564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:32-316
               
               
               Cow position:chr19:40051544-40051261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:32-321
               
               
               Cow position:chr19:30232575-30232845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr19:729889-729612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):243, 44

               
               
               Conread position:32-322
               
               
               Cow position:chr19:14253484-14253768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr19:15887476-15887182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:32-322
               
               
               Cow position:chr19:17664490-17664781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:32-322
               
               
               Cow position:chr19:18129406-18129693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:32-322
               
               
               Cow position:chr19:21816808-21817099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 132

               
               
               Conread position:32-322
               
               
               Cow position:chr19:25086379-25086647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr19:34166210-34166502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:32-322
               
               
               Cow position:chr19:38392648-38392941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:32-322
               
               
               Cow position:chr19:38842709-38842423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr19:39057090-39057381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:32-322
               
               
               Cow position:chr19:41584821-41585105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:32-322
               
               
               Cow position:chr19:43431476-43431189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:33-277
               
               
               Cow position:chr19:25628286-25628041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:33-282
               
               
               Cow position:chr19:20984922-20984673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:33-301
               
               
               Cow position:chr19:10242433-10242694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:33-302
               
               
               Cow position:chr19:55357907-55358161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:33-303
               
               
               Cow position:chr19:25526132-25526405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:33-309
               
               
               Cow position:chr19:55688852-55688570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):75, 205

               
               
               Conread position:33-311
               
               
               Cow position:chr19:4587873-4587609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:33-314
               
               
               Cow position:chr19:15852795-15853059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:33-314
               
               
               Cow position:chr19:44144065-44143806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):160, 36

               
               
               Conread position:33-320
               
               
               Cow position:chr19:43291895-43292194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:33-322
               
               
               Cow position:chr19:55952306-55952028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 45

               
               
               Conread position:34-200
               
               
               Cow position:chr19:36176596-36176767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:34-276
               
               
               Cow position:chr19:3496322-3496080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:34-277
               
               
               Cow position:chr19:25655386-25655131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):70, 116

               
               
               Conread position:34-277
               
               
               Cow position:chr19:56382989-56383250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:34-298
               
               
               Cow position:chr19:14347860-14348127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:34-301
               
               
               Cow position:chr19:48474993-48475245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:34-302
               
               
               Cow position:chr19:48960243-48960514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:34-308
               
               
               Cow position:chr19:11424465-11424189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:34-310
               
               
               Cow position:chr19:6079513-6079233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):24, 187

               
               
               Conread position:34-311
               
               
               Cow position:chr19:16694196-16693903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:34-322
               
               
               Cow position:chr19:10186350-10186640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:34-322
               
               
               Cow position:chr19:52456909-52456619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:34-322
               
               
               Cow position:chr19:53623410-53623701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):106, 74

               
               
               Conread position:35-277
               
               
               Cow position:chr19:42903857-42904104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:35-297
               
               
               Cow position:chr19:11376556-11376296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 25

               
               
               Conread position:35-301
               
               
               Cow position:chr19:52479847-52480104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):244, 72

               
               
               Conread position:35-322
               
               
               Cow position:chr19:7637386-7637102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:35-322
               
               
               Cow position:chr19:24137111-24137404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:35-322
               
               
               Cow position:chr19:39622954-39622651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 202

               
               
               Conread position:35-322
               
               
               Cow position:chr19:52185920-52185624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:36-249
               
               
               Cow position:chr19:32505894-32505688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:36-271
               
               
               Cow position:chr19:47109889-47110130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:36-302
               
               
               Cow position:chr19:34001059-34001328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:36-311
               
               
               Cow position:chr19:4800593-4800870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:37-277
               
               
               Cow position:chr19:55967840-55967607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):74, 69

               
               
               Conread position:37-278
               
               
               Cow position:chr19:17479113-17478864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 139

               
               
               Conread position:37-322
               
               
               Cow position:chr19:52158386-52158675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 116

               
               
               Conread position:38-302
               
               
               Cow position:chr19:3621283-3621549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:39-298
               
               
               Cow position:chr19:8869432-8869698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:39-322
               
               
               Cow position:chr19:43058389-43058671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:40-193
               
               
               Cow position:chr19:30267695-30267544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:40-313
               
               
               Cow position:chr19:41695805-41695529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:42-298
               
               
               Cow position:chr19:15092271-15092020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:42-309
               
               
               Cow position:chr19:8033602-8033872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:44-287
               
               
               Cow position:chr19:36245626-36245389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:45-308
               
               
               Cow position:chr19:52734977-52735233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:46-314
               
               
               Cow position:chr19:13121414-13121153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 104

               
               
               Conread position:47-322
               
               
               Cow position:chr19:16621491-16621225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 103

               
               
               Conread position:48-308
               
               
               Cow position:chr19:25035348-25035607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:55-305
               
               
               Cow position:chr19:42517388-42517132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:56-314
               
               
               Cow position:chr19:23378557-23378810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:56-322
               
               
               Cow position:chr19:19489948-19489685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):218, 12

               
               
               Conread position:57-275
               
               
               Cow position:chr19:5116005-5115786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:60-314
               
               
               Cow position:chr19:52187368-52187617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:66-322
               
               
               Cow position:chr19:23394666-23394918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:68-306
               
               
               Cow position:chr19:11565270-11565034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:72-301
               
               
               Cow position:chr19:43413666-43413901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:75-322
               
               
               Cow position:chr19:40127272-40127032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:79-314
               
               
               Cow position:chr19:14632142-14631908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:79-322
               
               
               Cow position:chr19:23832698-23832455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:84-322
               
               
               Cow position:chr19:7148161-7147923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:85-275
               
               
               Cow position:chr19:3834180-3834366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:85-322
               
               
               Cow position:chr19:24005572-24005788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:90-321
               
               
               Cow position:chr19:10735240-10735026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):146, 41

               
               
               Conread position:92-273
               
               
               Cow position:chr19:46694275-46694461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:92-314
               
               
               Cow position:chr19:28447354-28447572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 49

               
               
               Conread position:94-227
               
               
               Cow position:chr19:14470121-14469988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:94-266
               
               
               Cow position:chr19:33980877-33981040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-278
               
               
               Cow position:chr19:31595216-31595397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-282
               
               
               Cow position:chr19:25954822-25954632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):144, 47

               
               
               Conread position:94-282
               
               
               Cow position:chr19:33575439-33575623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-293
               
               
               Cow position:chr19:38500080-38500275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-297
               
               
               Cow position:chr19:35322220-35322021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:94-298
               
               
               Cow position:chr19:25763029-25763227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:94-304
               
               
               Cow position:chr19:52750843-52750636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:94-306
               
               
               Cow position:chr19:2221162-2220951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:94-306
               
               
               Cow position:chr19:36845166-36845374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:94-308
               
               
               Cow position:chr19:25853484-25853699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:94-314
               
               
               Cow position:chr19:43764-43978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):204, 47

               
               
               Conread position:94-322
               
               
               Cow position:chr19:12052931-12052714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr19:12067660-12067877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr19:19549632-19549422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr19:34420329-34420542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:95-314
               
               
               Cow position:chr19:33987980-33988202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):8, 135

               
               
               Conread position:95-314
               
               
               Cow position:chr19:37467142-37466928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:95-322
               
               
               Cow position:chr19:10929358-10929579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):116, 47

               
               
               Conread position:100-297
               
               
               Cow position:chr19:42768177-42767983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:100-313
               
               
               Cow position:chr19:3498031-3497821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:101-314
               
               
               Cow position:chr19:41024144-41024354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:104-228
               
               
               Cow position:chr19:35756559-35756682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:104-272
               
               
               Cow position:chr19:11212475-11212309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:104-277
               
               
               Cow position:chr19:48744341-48744174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-295
               
               
               Cow position:chr19:11646498-11646680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:104-305
               
               
               Cow position:chr19:47185156-47184959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:104-314
               
               
               Cow position:chr19:16105156-16104950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr19:11560117-11559902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:105-311
               
               
               Cow position:chr19:52711432-52711231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):174, 37

               
               
               Conread position:105-322
               
               
               Cow position:chr19:33913451-33913663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:106-297
               
               
               Cow position:chr19:13488577-13488386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:106-299
               
               
               Cow position:chr19:1978096-1978301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:106-302
               
               
               Cow position:chr19:39781445-39781640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:106-302
               
               
               Cow position:chr19:47986784-47986978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-305
               
               
               Cow position:chr19:39758449-39758644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:106-311
               
               
               Cow position:chr19:54915764-54915561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):172, 34

               
               
               Conread position:106-316
               
               
               Cow position:chr19:22450002-22449790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:106-322
               
               
               Cow position:chr19:39254523-39254307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:108-281
               
               
               Cow position:chr19:13757179-13757350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:108-302
               
               
               Cow position:chr19:24692934-24693128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:114-314
               
               
               Cow position:chr19:10238671-10238869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:116-297
               
               
               Cow position:chr19:37067076-37067253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:117-297
               
               
               Cow position:chr19:39613231-39613050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 127

               
               
               Conread position:118-322
               
               
               Cow position:chr19:6344009-6344215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 121

               
               
               Conread position:119-277
               
               
               Cow position:chr19:1854101-1853948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):148, 20

               
               
               Conread position:120-297
               
               
               Cow position:chr19:6154658-6154477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:120-308
               
               
               Cow position:chr19:23087926-23088110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:122-312
               
               
               Cow position:chr19:22438586-22438773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:124-297
               
               
               Cow position:chr19:21176796-21176626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):164, 18

               
               
               Conread position:124-322
               
               
               Cow position:chr19:28810373-28810183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:132-309
               
               
               Cow position:chr19:28135515-28135691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):141, 10

               
               
               Conread position:132-322
               
               
               Cow position:chr19:34758052-34757859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:134-297
               
               
               Cow position:chr19:10538599-10538438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:134-305
               
               
               Cow position:chr19:15368071-15368244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:135-302
               
               
               Cow position:chr19:49221666-49221501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:136-295
               
               
               Cow position:chr19:23756788-23756629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-298
               
               
               Cow position:chr19:43372994-43373155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-312
               
               
               Cow position:chr19:12705883-12705707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):137, 144

               
               
               Conread position:137-322
               
               
               Cow position:chr19:23889532-23889353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:142-301
               
               
               Cow position:chr19:18054296-18054137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-269
               
               
               Cow position:chr19:18892156-18892030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-273
               
               
               Cow position:chr19:39060730-39060606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 52

               
               
               Conread position:145-297
               
               
               Cow position:chr19:10930453-10930303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr19:26167949-26167791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr19:40002393-40002235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):95, 77

               
               
               Conread position:145-307
               
               
               Cow position:chr19:24664559-24664401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:145-314
               
               
               Cow position:chr19:15362737-15362564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):78, 144

               
               
               Conread position:145-315
               
               
               Cow position:chr19:24253336-24253167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):129, 140

               
               
               Conread position:145-322
               
               
               Cow position:chr19:26269265-26269092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):159, 28

               
               
               Conread position:145-322
               
               
               Cow position:chr19:38732102-38732271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:146-271
               
               
               Cow position:chr19:37633261-37633136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-308
               
               
               Cow position:chr19:19180389-19180230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:148-322
               
               
               Cow position:chr19:30227487-30227656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:150-322
               
               
               Cow position:chr19:44572051-44572221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:153-293
               
               
               Cow position:chr19:45396930-45397070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:153-322
               
               
               Cow position:chr19:55438674-55438844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 49

               
               
               Conread position:156-301
               
               
               Cow position:chr19:25835353-25835213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:157-295
               
               
               Cow position:chr19:4117389-4117250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:158-306
               
               
               Cow position:chr19:25696255-25696107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:161-298
               
               
               Cow position:chr19:37560214-37560079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):118, 35

               
               
               Conread position:161-322
               
               
               Cow position:chr19:52728590-52728744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):9, 124

               
               
               Conread position:162-293
               
               
               Cow position:chr19:34459491-34459360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-282
               
               
               Cow position:chr19:25832218-25832099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-314
               
               
               Cow position:chr19:12279711-12279861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:163-315
               
               
               Cow position:chr19:53378683-53378835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-303
               
               
               Cow position:chr19:30241682-30241819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:168-277
               
               
               Cow position:chr19:19916434-19916325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:169-271
               
               
               Cow position:chr19:38723737-38723635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-322
               
               
               Cow position:chr19:1897962-1897815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr19:13996438-13996292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr19:53189867-53189717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:174-322
               
               
               Cow position:chr19:39981729-39981872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:178-322
               
               
               Cow position:chr19:36978263-36978404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:180-312
               
               
               Cow position:chr19:46300421-46300552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:180-320
               
               
               Cow position:chr19:53925140-53925282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:183-322
               
               
               Cow position:chr19:5261334-5261473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:185-322
               
               
               Cow position:chr19:23559385-23559515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:193-311
               
               
               Cow position:chr19:20331825-20331708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:199-322
               
               
               Cow position:chr19:14823273-14823388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:201-314
               
               
               Cow position:chr19:22871236-22871123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-314
               
               
               Cow position:chr19:46822728-46822842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:202-322
               
               
               Cow position:chr19:27968676-27968560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-282
               
               
               Cow position:chr2:17444623-17444909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:1-282
               
               
               Cow position:chr2:38785775-38785480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:1-293
               
               
               Cow position:chr2:38362543-38362243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:1-295
               
               
               Cow position:chr2:48864152-48863866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:1-297
               
               
               Cow position:chr2:38658950-38658660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:1-298
               
               
               Cow position:chr2:72183662-72183363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-322
               
               
               Cow position:chr2:16505648-16505323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):107, 143

               
               
               Conread position:2-311
               
               
               Cow position:chr2:7383855-7383548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:5-297
               
               
               Cow position:chr2:34750145-34749857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:5-316
               
               
               Cow position:chr2:11734347-11734665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:6-227
               
               
               Cow position:chr2:11806160-11806376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:6-260
               
               
               Cow position:chr2:45665861-45666123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-283
               
               
               Cow position:chr2:46375100-46374830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:6-302
               
               
               Cow position:chr2:1762630-1762924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-311
               
               
               Cow position:chr2:24434447-24434139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:6-311
               
               
               Cow position:chr2:44191319-44191620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:6-311
               
               
               Cow position:chr2:68488168-68487863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-314
               
               
               Cow position:chr2:23120925-23120626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):88, 6

               
               
               Conread position:6-322
               
               
               Cow position:chr2:77157511-77157202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-322
               
               
               Cow position:chr2:80115933-80116242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:7-300
               
               
               Cow position:chr2:75227036-75227333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:7-311
               
               
               Cow position:chr2:47116083-47115778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):8, 138

               
               
               Conread position:8-297
               
               
               Cow position:chr2:43624692-43624406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 7

               
               
               Conread position:8-302
               
               
               Cow position:chr2:46052341-46052630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:9-301
               
               
               Cow position:chr2:46189263-46188965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 131

               
               
               Conread position:9-311
               
               
               Cow position:chr2:25597661-25597354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:9-314
               
               
               Cow position:chr2:32431892-32431593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:9-314
               
               
               Cow position:chr2:39500860-39501181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:9-322
               
               
               Cow position:chr2:32048317-32048629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:9-322
               
               
               Cow position:chr2:47064949-47065257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:10-213
               
               
               Cow position:chr2:38628745-38628952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:10-248
               
               
               Cow position:chr2:29268895-29269150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:10-263
               
               
               Cow position:chr2:9324828-9325092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:10-275
               
               
               Cow position:chr2:44229856-44229590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 139

               
               
               Conread position:10-298
               
               
               Cow position:chr2:66480351-66480058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-305
               
               
               Cow position:chr2:21003015-21003307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:10-311
               
               
               Cow position:chr2:39263322-39263630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 145

               
               
               Conread position:10-315
               
               
               Cow position:chr2:45619561-45619251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):12, 195

               
               
               Conread position:10-322
               
               
               Cow position:chr2:84970873-84970561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:11-281
               
               
               Cow position:chr2:17328588-17328861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:11-297
               
               
               Cow position:chr2:73353629-73353919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:11-301
               
               
               Cow position:chr2:13001643-13001928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 125

               
               
               Conread position:11-302
               
               
               Cow position:chr2:31783774-31784061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:11-303
               
               
               Cow position:chr2:45575157-45574871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 95

               
               
               Conread position:11-311
               
               
               Cow position:chr2:81927694-81927988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:11-314
               
               
               Cow position:chr2:46033167-46033481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:11-321
               
               
               Cow position:chr2:39513860-39514184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 306

               
               
               Conread position:11-322
               
               
               Cow position:chr2:14218486-14218799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:12-310
               
               
               Cow position:chr2:36017576-36017274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:15-275
               
               
               Cow position:chr2:2590110-2589841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):92, 135

               
               
               Conread position:15-296
               
               
               Cow position:chr2:80119-79832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:15-297
               
               
               Cow position:chr2:24593712-24593993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):93, 147

               
               
               Conread position:19-225
               
               
               Cow position:chr2:45880934-45880721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:19-282
               
               
               Cow position:chr2:992001-992268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:19-295
               
               
               Cow position:chr2:44550996-44550723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:19-314
               
               
               Cow position:chr2:1708827-1709112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 18

               
               
               Conread position:20-298
               
               
               Cow position:chr2:54811006-54810726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:21-314
               
               
               Cow position:chr2:42607910-42608210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 132

               
               
               Conread position:23-322
               
               
               Cow position:chr2:17842125-17841847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:23-322
               
               
               Cow position:chr2:29121735-29122029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:24-293
               
               
               Cow position:chr2:53501175-53500912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):104, 6

               
               
               Conread position:24-314
               
               
               Cow position:chr2:27337927-27337633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:26-282
               
               
               Cow position:chr2:44232600-44232341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:27-226
               
               
               Cow position:chr2:67313836-67313633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 130

               
               
               Conread position:27-248
               
               
               Cow position:chr2:51824777-51825000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:27-277
               
               
               Cow position:chr2:14089636-14089900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:27-291
               
               
               Cow position:chr2:45367147-45367414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 179

               
               
               Conread position:27-308
               
               
               Cow position:chr2:40879943-40880205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:27-311
               
               
               Cow position:chr2:58135544-58135251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:27-322
               
               
               Cow position:chr2:32660027-32660325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:27-322
               
               
               Cow position:chr2:67596162-67595872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:28-274
               
               
               Cow position:chr2:85281260-85281023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:28-298
               
               
               Cow position:chr2:47147764-47148031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:28-310
               
               
               Cow position:chr2:46949031-46948749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:28-311
               
               
               Cow position:chr2:47073045-47073329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:28-322
               
               
               Cow position:chr2:1303803-1304097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:28-322
               
               
               Cow position:chr2:36423867-36424181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:29-282
               
               
               Cow position:chr2:15674401-15674652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:29-286
               
               
               Cow position:chr2:41461223-41461486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:29-293
               
               
               Cow position:chr2:11696988-11697247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:29-296
               
               
               Cow position:chr2:63331954-63331676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):55, 115

               
               
               Conread position:29-297
               
               
               Cow position:chr2:26501079-26500805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:29-298
               
               
               Cow position:chr2:25282966-25283246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:29-301
               
               
               Cow position:chr2:15298391-15298668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:29-301
               
               
               Cow position:chr2:42183223-42183503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:29-301
               
               
               Cow position:chr2:46120777-46120511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:29-301
               
               
               Cow position:chr2:46130294-46130029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:29-301
               
               
               Cow position:chr2:69419731-69419454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:29-302
               
               
               Cow position:chr2:6160473-6160209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:29-312
               
               
               Cow position:chr2:67479834-67480117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:29-314
               
               
               Cow position:chr2:54790137-54790427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:29-314
               
               
               Cow position:chr2:58153560-58153848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):79, 99

               
               
               Conread position:29-316
               
               
               Cow position:chr2:39815428-39815136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:29-320
               
               
               Cow position:chr2:43130971-43131241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:29-322
               
               
               Cow position:chr2:6356529-6356220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:29-322
               
               
               Cow position:chr2:43835705-43835415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:29-322
               
               
               Cow position:chr2:58686792-58687078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 95

               
               
               Conread position:29-322
               
               
               Cow position:chr2:64533200-64533484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):33, 70

               
               
               Conread position:30-301
               
               
               Cow position:chr2:39335009-39334740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:30-302
               
               
               Cow position:chr2:44051163-44051441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:30-314
               
               
               Cow position:chr2:19212195-19211915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 5

               
               
               Conread position:31-282
               
               
               Cow position:chr2:70495130-70495380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:31-301
               
               
               Cow position:chr2:46294180-46293920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):180, 33

               
               
               Conread position:31-302
               
               
               Cow position:chr2:24218358-24218084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:31-302
               
               
               Cow position:chr2:58537139-58536874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):66, 211

               
               
               Conread position:32-191
               
               
               Cow position:chr2:68716811-68716647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-226
               
               
               Cow position:chr2:34695099-34695301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:32-226
               
               
               Cow position:chr2:75561698-75561895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:32-227
               
               
               Cow position:chr2:43577939-43577740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-232
               
               
               Cow position:chr2:61974657-61974859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-244
               
               
               Cow position:chr2:4254674-4254461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:32-252
               
               
               Cow position:chr2:4655238-4655016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-263
               
               
               Cow position:chr2:52344612-52344844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:32-272
               
               
               Cow position:chr2:8355084-8354846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-275
               
               
               Cow position:chr2:45912776-45912527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-277
               
               
               Cow position:chr2:19328403-19328654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:32-277
               
               
               Cow position:chr2:41452090-41452340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:32-277
               
               
               Cow position:chr2:47055766-47056014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:32-277
               
               
               Cow position:chr2:53532950-53532705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:32-277
               
               
               Cow position:chr2:73094930-73094688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:32-280
               
               
               Cow position:chr2:48361429-48361682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-281
               
               
               Cow position:chr2:30144580-30144829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:32-282
               
               
               Cow position:chr2:15694086-15694317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:32-282
               
               
               Cow position:chr2:54789631-54789886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:32-287
               
               
               Cow position:chr2:549470-549213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:32-287
               
               
               Cow position:chr2:39564215-39564471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:32-287
               
               
               Cow position:chr2:46230905-46230646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:32-289
               
               
               Cow position:chr2:33262759-33262498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:32-291
               
               
               Cow position:chr2:17114874-17114608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:32-291
               
               
               Cow position:chr2:39941348-39941596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-292
               
               
               Cow position:chr2:46247601-46247339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-294
               
               
               Cow position:chr2:37009274-37009535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):76, 93

               
               
               Conread position:32-294
               
               
               Cow position:chr2:39584312-39584572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 57

               
               
               Conread position:32-295
               
               
               Cow position:chr2:39068164-39068411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):242, 76

               
               
               Conread position:32-296
               
               
               Cow position:chr2:80963789-80963525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:32-296
               
               
               Cow position:chr2:82581073-82580803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:32-297
               
               
               Cow position:chr2:41019356-41019082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-297
               
               
               Cow position:chr2:44065448-44065698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:32-297
               
               
               Cow position:chr2:53851294-53851563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-298
               
               
               Cow position:chr2:32114934-32115196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:32-298
               
               
               Cow position:chr2:41954741-41955015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:32-298
               
               
               Cow position:chr2:45478730-45478469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:32-298
               
               
               Cow position:chr2:45623874-45624142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:32-298
               
               
               Cow position:chr2:77467586-77467322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:32-300
               
               
               Cow position:chr2:41184919-41185188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:32-301
               
               
               Cow position:chr2:31529370-31529623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):199, 99

               
               
               Conread position:32-301
               
               
               Cow position:chr2:44170418-44170691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-301
               
               
               Cow position:chr2:53649886-53650149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:32-301
               
               
               Cow position:chr2:56828711-56828429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:32-301
               
               
               Cow position:chr2:70704113-70704389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-301
               
               
               Cow position:chr2:77212319-77212051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:32-302
               
               
               Cow position:chr2:15597615-15597344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:32-302
               
               
               Cow position:chr2:39590111-39590392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):51, 108

               
               
               Conread position:32-302
               
               
               Cow position:chr2:43789961-43790233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:32-302
               
               
               Cow position:chr2:45499344-45499070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:32-302
               
               
               Cow position:chr2:46312312-46312572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:32-302
               
               
               Cow position:chr2:69747761-69747484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-305
               
               
               Cow position:chr2:38273399-38273687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:32-305
               
               
               Cow position:chr2:44081294-44081572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-305
               
               
               Cow position:chr2:54700311-54700591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:32-305
               
               
               Cow position:chr2:61421315-61421033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):26, 122

               
               
               Conread position:32-305
               
               
               Cow position:chr2:64212700-64212419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:32-306
               
               
               Cow position:chr2:40403164-40402891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 25

               
               
               Conread position:32-306
               
               
               Cow position:chr2:46343280-46343013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:32-306
               
               
               Cow position:chr2:85496462-85496201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:32-308
               
               
               Cow position:chr2:46909576-46909298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:32-308
               
               
               Cow position:chr2:52409419-52409158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):104, 37

               
               
               Conread position:32-308
               
               
               Cow position:chr2:74260314-74260596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-309
               
               
               Cow position:chr2:20362786-20362518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-309
               
               
               Cow position:chr2:43609247-43608983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:32-309
               
               
               Cow position:chr2:85339601-85339318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:32-310
               
               
               Cow position:chr2:47624543-47624267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:32-311
               
               
               Cow position:chr2:1638460-1638745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr2:5130593-5130312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:32-311
               
               
               Cow position:chr2:32403115-32402829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 183

               
               
               Conread position:32-311
               
               
               Cow position:chr2:32416997-32416713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):74, 108

               
               
               Conread position:32-311
               
               
               Cow position:chr2:42226409-42226120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:32-314
               
               
               Cow position:chr2:16428539-16428257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:32-314
               
               
               Cow position:chr2:17967171-17966887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-314
               
               
               Cow position:chr2:19494067-19494359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:32-314
               
               
               Cow position:chr2:37373726-37373994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:32-314
               
               
               Cow position:chr2:38965481-38965757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:32-314
               
               
               Cow position:chr2:40488674-40488952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:32-314
               
               
               Cow position:chr2:43994796-43995078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:32-314
               
               
               Cow position:chr2:46262306-46262586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 40

               
               
               Conread position:32-314
               
               
               Cow position:chr2:46351907-46351638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:32-314
               
               
               Cow position:chr2:54967864-54968154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):28, 239

               
               
               Conread position:32-314
               
               
               Cow position:chr2:62744149-62743865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:32-315
               
               
               Cow position:chr2:11656754-11657035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:32-315
               
               
               Cow position:chr2:58074487-58074200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:32-316
               
               
               Cow position:chr2:13604326-13604611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-320
               
               
               Cow position:chr2:5300449-5300741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 237

               
               
               Conread position:32-320
               
               
               Cow position:chr2:6539377-6539077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:32-320
               
               
               Cow position:chr2:46745781-46746077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:32-320
               
               
               Cow position:chr2:57939544-57939828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:32-321
               
               
               Cow position:chr2:26806256-26805966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:32-322
               
               
               Cow position:chr2:6038861-6039160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 240

               
               
               Conread position:32-322
               
               
               Cow position:chr2:7194060-7194354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 190

               
               
               Conread position:32-322
               
               
               Cow position:chr2:14349644-14349918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):195, 76

               
               
               Conread position:32-322
               
               
               Cow position:chr2:14826147-14826424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:32-322
               
               
               Cow position:chr2:17940429-17940140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:32-322
               
               
               Cow position:chr2:21382995-21382704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr2:24007282-24007563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:32-322
               
               
               Cow position:chr2:24393827-24393550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:32-322
               
               
               Cow position:chr2:28820221-28820516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr2:31499861-31500149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:32-322
               
               
               Cow position:chr2:36963389-36963670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:32-322
               
               
               Cow position:chr2:40484663-40484362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):72, 221

               
               
               Conread position:32-322
               
               
               Cow position:chr2:45784589-45784897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr2:46202129-46202412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr2:46227324-46227611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 104

               
               
               Conread position:32-322
               
               
               Cow position:chr2:54654759-54654469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:32-322
               
               
               Cow position:chr2:56351059-56350767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr2:78249595-78249884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr2:80275434-80275148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:33-192
               
               
               Cow position:chr2:15815453-15815608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:33-255
               
               
               Cow position:chr2:1658353-1658594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:33-275
               
               
               Cow position:chr2:70895889-70896139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:33-284
               
               
               Cow position:chr2:25448189-25448442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:33-286
               
               
               Cow position:chr2:46330919-46331181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:33-291
               
               
               Cow position:chr2:38747524-38747778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:33-297
               
               
               Cow position:chr2:27173230-27173494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:33-297
               
               
               Cow position:chr2:46137298-46137040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 110

               
               
               Conread position:33-298
               
               
               Cow position:chr2:63274086-63273817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):71, 110

               
               
               Conread position:33-300
               
               
               Cow position:chr2:22372088-22371822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:33-306
               
               
               Cow position:chr2:42255296-42255571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:33-308
               
               
               Cow position:chr2:17805904-17805631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:33-309
               
               
               Cow position:chr2:45535324-45535603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:33-311
               
               
               Cow position:chr2:16514643-16514921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:33-311
               
               
               Cow position:chr2:18621270-18621555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):75, 40

               
               
               Conread position:33-311
               
               
               Cow position:chr2:36055938-36055658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:33-311
               
               
               Cow position:chr2:62644447-62644733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:33-314
               
               
               Cow position:chr2:192600-192322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:33-314
               
               
               Cow position:chr2:2673385-2673675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:33-314
               
               
               Cow position:chr2:13582441-13582728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):70, 113

               
               
               Conread position:33-314
               
               
               Cow position:chr2:18997584-18997861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 75

               
               
               Conread position:33-314
               
               
               Cow position:chr2:19287218-19286940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:33-314
               
               
               Cow position:chr2:46357699-46357977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:33-316
               
               
               Cow position:chr2:15250040-15250327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 118

               
               
               Conread position:33-322
               
               
               Cow position:chr2:54883325-54883616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 46

               
               
               Conread position:33-322
               
               
               Cow position:chr2:85795095-85794824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:34-282
               
               
               Cow position:chr2:58034987-58035219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:34-296
               
               
               Cow position:chr2:59819943-59819682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:34-300
               
               
               Cow position:chr2:71437520-71437247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:34-301
               
               
               Cow position:chr2:41088254-41087971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 194

               
               
               Conread position:34-301
               
               
               Cow position:chr2:42800905-42801169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):61, 105

               
               
               Conread position:34-301
               
               
               Cow position:chr2:45542535-45542268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:34-308
               
               
               Cow position:chr2:7524277-7523992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 118

               
               
               Conread position:34-311
               
               
               Cow position:chr2:81388552-81388832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:34-322
               
               
               Cow position:chr2:46051444-46051163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 169

               
               
               Conread position:34-322
               
               
               Cow position:chr2:76969313-76969019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:35-228
               
               
               Cow position:chr2:36878353-36878160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 103

               
               
               Conread position:35-228
               
               
               Cow position:chr2:51594625-51594823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:35-271
               
               
               Cow position:chr2:7533906-7533670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:35-282
               
               
               Cow position:chr2:7573644-7573393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:35-294
               
               
               Cow position:chr2:61485490-61485746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):59, 107

               
               
               Conread position:35-295
               
               
               Cow position:chr2:15329254-15329507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:35-302
               
               
               Cow position:chr2:13369517-13369790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:35-302
               
               
               Cow position:chr2:44167937-44168197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):107, 5

               
               
               Conread position:35-304
               
               
               Cow position:chr2:9063135-9063408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:35-304
               
               
               Cow position:chr2:54971041-54971314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:35-306
               
               
               Cow position:chr2:47644914-47645184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 92

               
               
               Conread position:35-306
               
               
               Cow position:chr2:70674587-70674859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:35-311
               
               
               Cow position:chr2:42927586-42927310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:35-318
               
               
               Cow position:chr2:22254301-22254029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):203, 65

               
               
               Conread position:35-322
               
               
               Cow position:chr2:19294455-19294737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:36-268
               
               
               Cow position:chr2:80324991-80324749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:36-286
               
               
               Cow position:chr2:13684569-13684816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:36-297
               
               
               Cow position:chr2:41248429-41248699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:36-302
               
               
               Cow position:chr2:10655990-10655724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:36-304
               
               
               Cow position:chr2:55632641-55632909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:36-311
               
               
               Cow position:chr2:9370052-9369780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):180, 71

               
               
               Conread position:36-314
               
               
               Cow position:chr2:12950308-12950019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:36-320
               
               
               Cow position:chr2:6901640-6901926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:37-297
               
               
               Cow position:chr2:14710245-14709993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:37-302
               
               
               Cow position:chr2:80769981-80770247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):71, 118

               
               
               Conread position:41-307
               
               
               Cow position:chr2:16481995-16481724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:42-302
               
               
               Cow position:chr2:71622181-71621916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:42-312
               
               
               Cow position:chr2:59952981-59952719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:42-322
               
               
               Cow position:chr2:49428249-49428529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:43-276
               
               
               Cow position:chr2:15391656-15391884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 66

               
               
               Conread position:43-297
               
               
               Cow position:chr2:33554299-33554043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:43-322
               
               
               Cow position:chr2:15059191-15058917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:44-290
               
               
               Cow position:chr2:60690755-60691006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:46-271
               
               
               Cow position:chr2:70945274-70945505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:46-298
               
               
               Cow position:chr2:1073405-1073647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:46-305
               
               
               Cow position:chr2:28711119-28710869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:47-262
               
               
               Cow position:chr2:80865981-80865762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:48-284
               
               
               Cow position:chr2:62861463-62861702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:50-322
               
               
               Cow position:chr2:44007295-44007573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:52-292
               
               
               Cow position:chr2:827736-827490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:53-303
               
               
               Cow position:chr2:44222701-44222957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:54-290
               
               
               Cow position:chr2:56056627-56056868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:55-302
               
               
               Cow position:chr2:35948800-35948548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:55-314
               
               
               Cow position:chr2:30351820-30351559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:56-322
               
               
               Cow position:chr2:40597462-40597717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):39, 142

               
               
               Conread position:58-322
               
               
               Cow position:chr2:47753715-47753451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):204, 21

               
               
               Conread position:59-314
               
               
               Cow position:chr2:45642605-45642343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:60-311
               
               
               Cow position:chr2:39798125-39798383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:64-294
               
               
               Cow position:chr2:82115985-82116213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 64

               
               
               Conread position:64-302
               
               
               Cow position:chr2:19138003-19137758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:64-322
               
               
               Cow position:chr2:14626472-14626749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 151

               
               
               Conread position:64-322
               
               
               Cow position:chr2:33988423-33988162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:65-277
               
               
               Cow position:chr2:46191084-46190871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:65-302
               
               
               Cow position:chr2:60091537-60091302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:67-306
               
               
               Cow position:chr2:55496393-55496160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:69-311
               
               
               Cow position:chr2:35135858-35136101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):161, 73

               
               
               Conread position:71-310
               
               
               Cow position:chr2:60429183-60429420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:77-315
               
               
               Cow position:chr2:46161867-46162100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:78-311
               
               
               Cow position:chr2:8821144-8821373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:79-297
               
               
               Cow position:chr2:24530278-24530497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:79-302
               
               
               Cow position:chr2:29859921-29860134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:79-314
               
               
               Cow position:chr2:61815893-61815657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 78

               
               
               Conread position:84-284
               
               
               Cow position:chr2:45141322-45141529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:85-300
               
               
               Cow position:chr2:30911238-30911451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:85-301
               
               
               Cow position:chr2:69350651-69350434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:85-306
               
               
               Cow position:chr2:69579760-69579543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:85-311
               
               
               Cow position:chr2:46383546-46383323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):184, 57

               
               
               Conread position:86-298
               
               
               Cow position:chr2:38640232-38640451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:86-300
               
               
               Cow position:chr2:80177671-80177461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:86-321
               
               
               Cow position:chr2:68870606-68870836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:88-310
               
               
               Cow position:chr2:39544881-39544658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:89-322
               
               
               Cow position:chr2:38647237-38647004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:90-302
               
               
               Cow position:chr2:63074936-63074723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:91-311
               
               
               Cow position:chr2:43444517-43444734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:93-311
               
               
               Cow position:chr2:39663301-39663509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:94-271
               
               
               Cow position:chr2:61132738-61132918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:94-275
               
               
               Cow position:chr2:58479748-58479569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):143, 49

               
               
               Conread position:94-293
               
               
               Cow position:chr2:43123266-43123462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:94-296
               
               
               Cow position:chr2:29734751-29734945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):90, 49

               
               
               Conread position:94-297
               
               
               Cow position:chr2:57733357-57733561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:94-301
               
               
               Cow position:chr2:994437-994234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:94-305
               
               
               Cow position:chr2:69250742-69250532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:94-311
               
               
               Cow position:chr2:12840115-12839901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:94-311
               
               
               Cow position:chr2:44025303-44025518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 116

               
               
               Conread position:94-311
               
               
               Cow position:chr2:72310077-72309870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-312
               
               
               Cow position:chr2:47015407-47015194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):102, 39

               
               
               Conread position:94-314
               
               
               Cow position:chr2:39513394-39513618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:94-314
               
               
               Cow position:chr2:45596908-45597123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-315
               
               
               Cow position:chr2:14634115-14634329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-320
               
               
               Cow position:chr2:72527887-72528105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr2:22677120-22677340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-282
               
               
               Cow position:chr2:79138171-79138361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:96-302
               
               
               Cow position:chr2:50449984-50449779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:101-297
               
               
               Cow position:chr2:10439771-10439965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:101-311
               
               
               Cow position:chr2:22042470-22042680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):140, 32

               
               
               Conread position:101-314
               
               
               Cow position:chr2:28301139-28301346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:104-276
               
               
               Cow position:chr2:41381940-41382109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:104-293
               
               
               Cow position:chr2:40466572-40466758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-302
               
               
               Cow position:chr2:13672462-13672648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-309
               
               
               Cow position:chr2:17257782-17257979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:104-314
               
               
               Cow position:chr2:41462489-41462280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:104-314
               
               
               Cow position:chr2:46968253-46968048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-314
               
               
               Cow position:chr2:55817674-55817883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):179, 29

               
               
               Conread position:104-316
               
               
               Cow position:chr2:47893980-47893772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:104-318
               
               
               Cow position:chr2:27180022-27180239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:104-321
               
               
               Cow position:chr2:47443198-47443416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):169, 38

               
               
               Conread position:104-322
               
               
               Cow position:chr2:84480565-84480355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:105-322
               
               
               Cow position:chr2:19502542-19502329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:106-288
               
               
               Cow position:chr2:59427387-59427567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-294
               
               
               Cow position:chr2:40257475-40257288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-305
               
               
               Cow position:chr2:46971059-46971261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:106-312
               
               
               Cow position:chr2:30642722-30642523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:106-313
               
               
               Cow position:chr2:38205823-38205613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:107-314
               
               
               Cow position:chr2:17492573-17492374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:109-322
               
               
               Cow position:chr2:35988674-35988471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:111-298
               
               
               Cow position:chr2:15871882-15872063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:112-298
               
               
               Cow position:chr2:83184098-83184282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:113-282
               
               
               Cow position:chr2:44217962-44217797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:113-322
               
               
               Cow position:chr2:21410163-21410374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:114-304
               
               
               Cow position:chr2:24535264-24535443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:116-311
               
               
               Cow position:chr2:45721318-45721126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:118-259
               
               
               Cow position:chr2:16492594-16492733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:119-302
               
               
               Cow position:chr2:29214360-29214182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:120-322
               
               
               Cow position:chr2:50905758-50905557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):147, 13

               
               
               Conread position:127-312
               
               
               Cow position:chr2:81757992-81758170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:129-306
               
               
               Cow position:chr2:1335736-1335559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:131-311
               
               
               Cow position:chr2:44216397-44216577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):148, 14

               
               
               Conread position:132-322
               
               
               Cow position:chr2:39750077-39750261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:135-322
               
               
               Cow position:chr2:1422316-1422496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:136-294
               
               
               Cow position:chr2:7453382-7453227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:140-275
               
               
               Cow position:chr2:6329261-6329126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr2:24722299-24722123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:143-320
               
               
               Cow position:chr2:64773358-64773536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:144-302
               
               
               Cow position:chr2:43990746-43990903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:145-297
               
               
               Cow position:chr2:37619939-37619784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:145-301
               
               
               Cow position:chr2:28330772-28330617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr2:40373423-40373273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:145-308
               
               
               Cow position:chr2:56325588-56325423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:146-295
               
               
               Cow position:chr2:53491475-53491324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:146-300
               
               
               Cow position:chr2:46164524-46164371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:146-311
               
               
               Cow position:chr2:15377081-15377242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:146-314
               
               
               Cow position:chr2:24634856-24635021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:146-314
               
               
               Cow position:chr2:40703690-40703523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:147-307
               
               
               Cow position:chr2:43591396-43591236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:150-308
               
               
               Cow position:chr2:29282889-29283046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:152-314
               
               
               Cow position:chr2:5604507-5604668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:153-298
               
               
               Cow position:chr2:47879224-47879368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:154-297
               
               
               Cow position:chr2:66149309-66149451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:154-304
               
               
               Cow position:chr2:21049343-21049198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:154-320
               
               
               Cow position:chr2:46014750-46014912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:154-322
               
               
               Cow position:chr2:15219097-15219263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:155-322
               
               
               Cow position:chr2:57802504-57802333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:156-297
               
               
               Cow position:chr2:45567917-45567776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):101, 112

               
               
               Conread position:163-311
               
               
               Cow position:chr2:66095001-66094851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr2:82139122-82138971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:166-299
               
               
               Cow position:chr2:40058743-40058610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:166-322
               
               
               Cow position:chr2:29395013-29394861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:168-297
               
               
               Cow position:chr2:35207912-35208043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:168-322
               
               
               Cow position:chr2:14884239-14884389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:169-320
               
               
               Cow position:chr2:39642749-39642897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:170-301
               
               
               Cow position:chr2:81493597-81493468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:170-302
               
               
               Cow position:chr2:6952468-6952599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:170-322
               
               
               Cow position:chr2:11217792-11217943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:173-321
               
               
               Cow position:chr2:13695238-13695092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:174-297
               
               
               Cow position:chr2:1141487-1141608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:175-311
               
               
               Cow position:chr2:44032394-44032261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:178-320
               
               
               Cow position:chr2:37891483-37891340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:180-306
               
               
               Cow position:chr2:54931829-54931703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-314
               
               
               Cow position:chr2:19164957-19164824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:180-314
               
               
               Cow position:chr2:56339021-56338888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:181-314
               
               
               Cow position:chr2:9476425-9476290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:181-322
               
               
               Cow position:chr2:46138491-46138349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 121

               
               
               Conread position:182-306
               
               
               Cow position:chr2:84928169-84928288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:182-322
               
               
               Cow position:chr2:46300623-46300761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:183-311
               
               
               Cow position:chr2:52398329-52398457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:184-302
               
               
               Cow position:chr2:46143143-46143261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:184-311
               
               
               Cow position:chr2:38950107-38949982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:185-310
               
               
               Cow position:chr2:66614825-66614699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:185-316
               
               
               Cow position:chr2:3553978-3554104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:187-322
               
               
               Cow position:chr2:39368868-39369011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:187-322
               
               
               Cow position:chr2:78669908-78669775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:195-322
               
               
               Cow position:chr2:81293852-81293977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:202-322
               
               
               Cow position:chr2:17942989-17942867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:202-322
               
               
               Cow position:chr2:66629220-66629343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:203-320
               
               
               Cow position:chr2:51624636-51624517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:219-322
               
               
               Cow position:chr2:75562056-75562159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-298
               
               
               Cow position:chr20:34777053-34777350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:1-314
               
               
               Cow position:chr20:40177117-40177431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:2-276
               
               
               Cow position:chr20:15235642-15235900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:2-298
               
               
               Cow position:chr20:32847230-32847517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:2-311
               
               
               Cow position:chr20:3321270-3320961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):197, 21

               
               
               Conread position:4-302
               
               
               Cow position:chr20:4334651-4334355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:4-302
               
               
               Cow position:chr20:13752109-13752398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:6-188
               
               
               Cow position:chr20:18618510-18618696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 143

               
               
               Conread position:6-302
               
               
               Cow position:chr20:27407995-27407719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):173, 6

               
               
               Conread position:6-322
               
               
               Cow position:chr20:8546939-8547251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:6-322
               
               
               Cow position:chr20:21019436-21019752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:10-266
               
               
               Cow position:chr20:28955823-28955563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:10-277
               
               
               Cow position:chr20:14572480-14572215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:11-276
               
               
               Cow position:chr20:21928781-21929053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:11-282
               
               
               Cow position:chr20:35407742-35408005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):98, 128

               
               
               Conread position:11-295
               
               
               Cow position:chr20:14879669-14879956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:11-302
               
               
               Cow position:chr20:23846791-23846490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr20:36779850-36779532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:12-277
               
               
               Cow position:chr20:11542402-11542138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:13-301
               
               
               Cow position:chr20:16935418-16935141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):266, 93

               
               
               Conread position:17-322
               
               
               Cow position:chr20:2819428-2819735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:19-298
               
               
               Cow position:chr20:581034-580750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 46

               
               
               Conread position:20-301
               
               
               Cow position:chr20:382225-381959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:26-314
               
               
               Cow position:chr20:12582054-12581769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:27-225
               
               
               Cow position:chr20:34901464-34901669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:27-291
               
               
               Cow position:chr20:6096599-6096332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):6, 116

               
               
               Conread position:27-314
               
               
               Cow position:chr20:40781861-40782146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:27-321
               
               
               Cow position:chr20:9267205-9266913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:27-322
               
               
               Cow position:chr20:20983893-20984184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:28-240
               
               
               Cow position:chr20:23103116-23103335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:28-314
               
               
               Cow position:chr20:14980616-14980320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:29-313
               
               
               Cow position:chr20:1575996-1576283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:31-277
               
               
               Cow position:chr20:8703010-8702762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):209, 100

               
               
               Conread position:31-298
               
               
               Cow position:chr20:14100537-14100265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:31-298
               
               
               Cow position:chr20:23286424-23286164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):242, 110

               
               
               Conread position:31-314
               
               
               Cow position:chr20:18379281-18379564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:31-321
               
               
               Cow position:chr20:34787044-34786757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:32-226
               
               
               Cow position:chr20:23505731-23505926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:32-228
               
               
               Cow position:chr20:39019595-39019796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:32-239
               
               
               Cow position:chr20:22313258-22313049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:32-255
               
               
               Cow position:chr20:3607056-3606834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-271
               
               
               Cow position:chr20:37165626-37165851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:32-272
               
               
               Cow position:chr20:39267059-39266814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:32-275
               
               
               Cow position:chr20:1640543-1640307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:32-275
               
               
               Cow position:chr20:39743219-39743457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:32-276
               
               
               Cow position:chr20:7210940-7211182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:32-276
               
               
               Cow position:chr20:18320891-18320646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-276
               
               
               Cow position:chr20:32084181-32083934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:32-277
               
               
               Cow position:chr20:14759760-14759516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:32-277
               
               
               Cow position:chr20:19363463-19363214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-277
               
               
               Cow position:chr20:22235215-22235461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:32-278
               
               
               Cow position:chr20:23792511-23792754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:32-282
               
               
               Cow position:chr20:9433487-9433741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:32-282
               
               
               Cow position:chr20:36207706-36207968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:32-284
               
               
               Cow position:chr20:15593196-15593441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 48

               
               
               Conread position:32-290
               
               
               Cow position:chr20:15565927-15565667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:32-296
               
               
               Cow position:chr20:10818323-10818073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:32-298
               
               
               Cow position:chr20:2169804-2169551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:32-298
               
               
               Cow position:chr20:22064971-22065236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:32-298
               
               
               Cow position:chr20:38768556-38768293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-299
               
               
               Cow position:chr20:8556370-8556098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:32-300
               
               
               Cow position:chr20:6240621-6240349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-301
               
               
               Cow position:chr20:3254953-3255210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:32-301
               
               
               Cow position:chr20:12239776-12239510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:32-301
               
               
               Cow position:chr20:20203116-20203388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:32-301
               
               
               Cow position:chr20:22484760-22485032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:32-301
               
               
               Cow position:chr20:28982599-28982874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-302
               
               
               Cow position:chr20:7362869-7363135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:32-302
               
               
               Cow position:chr20:13025710-13025436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:32-302
               
               
               Cow position:chr20:20967230-20967495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:32-306
               
               
               Cow position:chr20:23870912-23870641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):93, 106

               
               
               Conread position:32-306
               
               
               Cow position:chr20:35364946-35365220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:32-308
               
               
               Cow position:chr20:20242000-20242263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):187, 40

               
               
               Conread position:32-308
               
               
               Cow position:chr20:23064929-23064655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-309
               
               
               Cow position:chr20:22978221-22978508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):60, 122

               
               
               Conread position:32-310
               
               
               Cow position:chr20:39398386-39398665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:32-311
               
               
               Cow position:chr20:5636384-5636665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:32-311
               
               
               Cow position:chr20:5826841-5827123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:32-311
               
               
               Cow position:chr20:17845861-17846146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:32-311
               
               
               Cow position:chr20:28067526-28067242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):46, 172

               
               
               Conread position:32-311
               
               
               Cow position:chr20:39728348-39728634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:32-312
               
               
               Cow position:chr20:39517907-39518190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:32-314
               
               
               Cow position:chr20:12420718-12420432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:32-314
               
               
               Cow position:chr20:14806786-14807070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-315
               
               
               Cow position:chr20:24069704-24069993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-317
               
               
               Cow position:chr20:3599490-3599209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:32-320
               
               
               Cow position:chr20:15548996-15548704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:32-320
               
               
               Cow position:chr20:28594183-28594479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:32-320
               
               
               Cow position:chr20:42469662-42469955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:32-321
               
               
               Cow position:chr20:25162228-25161944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-321
               
               
               Cow position:chr20:40423190-40422912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:32-322
               
               
               Cow position:chr20:5814474-5814756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-322
               
               
               Cow position:chr20:5998768-5998470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):50, 105

               
               
               Conread position:32-322
               
               
               Cow position:chr20:6054618-6054319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 276

               
               
               Conread position:32-322
               
               
               Cow position:chr20:13269527-13269801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:32-322
               
               
               Cow position:chr20:34098058-34097761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):68, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr20:41089890-41089605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:33-276
               
               
               Cow position:chr20:7438951-7438703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:33-287
               
               
               Cow position:chr20:9412391-9412647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:33-295
               
               
               Cow position:chr20:4205868-4206136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:33-302
               
               
               Cow position:chr20:10208707-10208982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:33-302
               
               
               Cow position:chr20:11550267-11550541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:33-302
               
               
               Cow position:chr20:21372221-21372482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:33-306
               
               
               Cow position:chr20:21761677-21761955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:33-311
               
               
               Cow position:chr20:11482234-11481950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:33-314
               
               
               Cow position:chr20:2298876-2298608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 76

               
               
               Conread position:33-320
               
               
               Cow position:chr20:14433527-14433235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 236

               
               
               Conread position:33-322
               
               
               Cow position:chr20:8578149-8578438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:33-322
               
               
               Cow position:chr20:32463620-32463338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:34-298
               
               
               Cow position:chr20:35797511-35797778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:34-306
               
               
               Cow position:chr20:22959440-22959170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:34-314
               
               
               Cow position:chr20:7426285-7426011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:34-314
               
               
               Cow position:chr20:40691958-40692250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 137

               
               
               Conread position:34-320
               
               
               Cow position:chr20:26996436-26996719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:35-276
               
               
               Cow position:chr20:8307920-8308164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:35-277
               
               
               Cow position:chr20:35710075-35710325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:35-278
               
               
               Cow position:chr20:6258157-6257908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:35-282
               
               
               Cow position:chr20:19459758-19459511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:35-297
               
               
               Cow position:chr20:25657910-25657670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:35-302
               
               
               Cow position:chr20:28605107-28605381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:35-315
               
               
               Cow position:chr20:7738323-7738046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:35-322
               
               
               Cow position:chr20:5950740-5950453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:35-322
               
               
               Cow position:chr20:20099693-20099408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:36-272
               
               
               Cow position:chr20:28441234-28441471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:36-273
               
               
               Cow position:chr20:22265341-22265107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:36-288
               
               
               Cow position:chr20:40511853-40511594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:36-320
               
               
               Cow position:chr20:24711739-24712029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 119

               
               
               Conread position:38-294
               
               
               Cow position:chr20:398396-398141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:38-311
               
               
               Cow position:chr20:9537040-9537315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:40-277
               
               
               Cow position:chr20:6423880-6424116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 104

               
               
               Conread position:42-281
               
               
               Cow position:chr20:33363427-33363672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 104

               
               
               Conread position:42-298
               
               
               Cow position:chr20:15569036-15568779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:43-314
               
               
               Cow position:chr20:25009726-25009446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:44-276
               
               
               Cow position:chr20:26077745-26077520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:44-293
               
               
               Cow position:chr20:32866275-32866027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:46-297
               
               
               Cow position:chr20:19751222-19751476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:47-307
               
               
               Cow position:chr20:8620235-8619968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 220

               
               
               Conread position:47-311
               
               
               Cow position:chr20:38578844-38578579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:53-303
               
               
               Cow position:chr20:32709528-32709272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:55-282
               
               
               Cow position:chr20:21204283-21204508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):53, 175

               
               
               Conread position:57-277
               
               
               Cow position:chr20:38670684-38670899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:57-305
               
               
               Cow position:chr20:11135831-11135576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:57-322
               
               
               Cow position:chr20:4892167-4891931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:60-282
               
               
               Cow position:chr20:30887962-30888190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:61-291
               
               
               Cow position:chr20:11359694-11359468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:61-306
               
               
               Cow position:chr20:38089841-38090091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:64-304
               
               
               Cow position:chr20:6248663-6248425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:65-273
               
               
               Cow position:chr20:7624313-7624100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:74-272
               
               
               Cow position:chr20:17100303-17100506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 141

               
               
               Conread position:74-311
               
               
               Cow position:chr20:38514724-38514959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 182

               
               
               Conread position:85-322
               
               
               Cow position:chr20:16941329-16941095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:91-301
               
               
               Cow position:chr20:7756659-7756453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:92-314
               
               
               Cow position:chr20:19060871-19060653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):97, 38

               
               
               Conread position:93-276
               
               
               Cow position:chr20:25351438-25351265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:93-298
               
               
               Cow position:chr20:29805692-29805489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:93-301
               
               
               Cow position:chr20:5702691-5702897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:94-273
               
               
               Cow position:chr20:21999968-22000147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:94-291
               
               
               Cow position:chr20:24902328-24902130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:94-297
               
               
               Cow position:chr20:1524529-1524320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:94-298
               
               
               Cow position:chr20:21345398-21345603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:94-306
               
               
               Cow position:chr20:40157871-40158078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:94-310
               
               
               Cow position:chr20:21428130-21428341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:94-311
               
               
               Cow position:chr20:18392290-18392086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):183, 40

               
               
               Conread position:94-312
               
               
               Cow position:chr20:22030290-22030503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-314
               
               
               Cow position:chr20:23506499-23506285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):172, 47

               
               
               Conread position:94-317
               
               
               Cow position:chr20:21815531-21815748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr20:17251686-17251906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr20:29845020-29845242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:96-306
               
               
               Cow position:chr20:9376441-9376646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:101-240
               
               
               Cow position:chr20:35354846-35354707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:104-275
               
               
               Cow position:chr20:6358595-6358767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:104-281
               
               
               Cow position:chr20:4787033-4786865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-278
               
               
               Cow position:chr20:14620327-14620151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:106-297
               
               
               Cow position:chr20:42166800-42166611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:106-305
               
               
               Cow position:chr20:20056502-20056307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:106-306
               
               
               Cow position:chr20:12126322-12126126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:106-310
               
               
               Cow position:chr20:10772186-10772389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):164, 48

               
               
               Conread position:106-322
               
               
               Cow position:chr20:5078606-5078823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):103, 31

               
               
               Conread position:106-322
               
               
               Cow position:chr20:16548295-16548085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:106-322
               
               
               Cow position:chr20:33067383-33067172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):42, 162

               
               
               Conread position:113-311
               
               
               Cow position:chr20:11043488-11043291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:114-269
               
               
               Cow position:chr20:39212588-39212440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:115-264
               
               
               Cow position:chr20:1009715-1009570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:122-322
               
               
               Cow position:chr20:5364926-5365116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:123-282
               
               
               Cow position:chr20:8817498-8817337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:124-298
               
               
               Cow position:chr20:20158132-20158306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:130-311
               
               
               Cow position:chr20:33438978-33438797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:131-322
               
               
               Cow position:chr20:26723674-26723482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):153, 16

               
               
               Conread position:132-314
               
               
               Cow position:chr20:35445100-35444916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:136-302
               
               
               Cow position:chr20:24097009-24097174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:137-284
               
               
               Cow position:chr20:8912490-8912341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:143-274
               
               
               Cow position:chr20:33623537-33623408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:143-320
               
               
               Cow position:chr20:15529876-15530048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:144-305
               
               
               Cow position:chr20:15766127-15766288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:145-302
               
               
               Cow position:chr20:3148701-3148858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-298
               
               
               Cow position:chr20:3564180-3564328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):133, 61

               
               
               Conread position:152-301
               
               
               Cow position:chr20:39155439-39155585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:154-322
               
               
               Cow position:chr20:23678691-23678521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:155-306
               
               
               Cow position:chr20:39269058-39268906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:156-302
               
               
               Cow position:chr20:36312480-36312334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:160-296
               
               
               Cow position:chr20:19636144-19636008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-298
               
               
               Cow position:chr20:24314998-24314864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:166-293
               
               
               Cow position:chr20:34372664-34372539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:167-295
               
               
               Cow position:chr20:26905713-26905841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:167-314
               
               
               Cow position:chr20:26041059-26040910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:167-320
               
               
               Cow position:chr20:36671393-36671237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:170-311
               
               
               Cow position:chr20:7622939-7622800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:170-322
               
               
               Cow position:chr20:19834788-19834639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:174-314
               
               
               Cow position:chr20:20590255-20590117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:180-308
               
               
               Cow position:chr20:20312458-20312332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:188-310
               
               
               Cow position:chr20:19091081-19090956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:198-322
               
               
               Cow position:chr20:2762036-2762161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:199-322
               
               
               Cow position:chr20:16977773-16977650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:200-311
               
               
               Cow position:chr20:15515368-15515257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-314
               
               
               Cow position:chr21:38449560-38449244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-314
               
               
               Cow position:chr21:47465230-47464911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:1-322
               
               
               Cow position:chr21:22718893-22718573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 147

               
               
               Conread position:2-278
               
               
               Cow position:chr21:30607190-30606914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:3-322
               
               
               Cow position:chr21:33350643-33350956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:4-312
               
               
               Cow position:chr21:47764221-47763913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):5, 19

               
               
               Conread position:4-322
               
               
               Cow position:chr21:29069439-29069115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:6-249
               
               
               Cow position:chr21:4795118-4795362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:6-287
               
               
               Cow position:chr21:25764538-25764815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):100, 6

               
               
               Conread position:6-298
               
               
               Cow position:chr21:81974-82258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:6-314
               
               
               Cow position:chr21:11645076-11644758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:6-320
               
               
               Cow position:chr21:29214256-29213949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:6-322
               
               
               Cow position:chr21:3585467-3585156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:6-322
               
               
               Cow position:chr21:14452128-14452445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:8-273
               
               
               Cow position:chr21:18845117-18844845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 5

               
               
               Conread position:9-252
               
               
               Cow position:chr21:47067001-47066756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:9-258
               
               
               Cow position:chr21:20192794-20193045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 133

               
               
               Conread position:9-277
               
               
               Cow position:chr21:38120999-38121271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 132

               
               
               Conread position:9-300
               
               
               Cow position:chr21:15584522-15584224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:10-295
               
               
               Cow position:chr21:15611054-15611331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:10-302
               
               
               Cow position:chr21:28924013-28924305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-302
               
               
               Cow position:chr21:41590660-41590370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-311
               
               
               Cow position:chr21:29484880-29485182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:10-322
               
               
               Cow position:chr21:37706515-37706204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:11-278
               
               
               Cow position:chr21:2679460-2679719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:11-282
               
               
               Cow position:chr21:28442646-28442907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:11-293
               
               
               Cow position:chr21:1058978-1059262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:11-301
               
               
               Cow position:chr21:39403637-39403331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-311
               
               
               Cow position:chr21:30256366-30256070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:11-313
               
               
               Cow position:chr21:25382913-25383231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 305

               
               
               Conread position:11-314
               
               
               Cow position:chr21:45906721-45906413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 153

               
               
               Conread position:11-320
               
               
               Cow position:chr21:11359939-11360238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:13-316
               
               
               Cow position:chr21:35437563-35437280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):190, 77

               
               
               Conread position:17-305
               
               
               Cow position:chr21:10410123-10410420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 152

               
               
               Conread position:18-308
               
               
               Cow position:chr21:18800625-18800333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:19-302
               
               
               Cow position:chr21:643237-643519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:25-306
               
               
               Cow position:chr21:46849212-46848929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:27-263
               
               
               Cow position:chr21:19363547-19363304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 119

               
               
               Conread position:27-287
               
               
               Cow position:chr21:45262896-45262630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:27-305
               
               
               Cow position:chr21:6051423-6051699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:27-306
               
               
               Cow position:chr21:10004969-10004687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:27-322
               
               
               Cow position:chr21:10263949-10264243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):61, 121

               
               
               Conread position:27-322
               
               
               Cow position:chr21:32297591-32297300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):252, 73

               
               
               Conread position:27-322
               
               
               Cow position:chr21:44251919-44251632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:28-298
               
               
               Cow position:chr21:14760490-14760756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:28-308
               
               
               Cow position:chr21:1591469-1591746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 115

               
               
               Conread position:29-276
               
               
               Cow position:chr21:21223211-21223450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:29-276
               
               
               Cow position:chr21:44214042-44214295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:29-277
               
               
               Cow position:chr21:15911317-15911570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 117

               
               
               Conread position:29-302
               
               
               Cow position:chr21:38900696-38900967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 113

               
               
               Conread position:29-311
               
               
               Cow position:chr21:39401512-39401790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:29-312
               
               
               Cow position:chr21:34010478-34010193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 32

               
               
               Conread position:30-277
               
               
               Cow position:chr21:44515182-44515442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:30-282
               
               
               Cow position:chr21:12723079-12723328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:30-304
               
               
               Cow position:chr21:802376-802120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:31-268
               
               
               Cow position:chr21:20418765-20418521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:32-194
               
               
               Cow position:chr21:12960978-12960810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-205
               
               
               Cow position:chr21:18041927-18041749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:32-226
               
               
               Cow position:chr21:23150100-23149902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:32-228
               
               
               Cow position:chr21:17856468-17856665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:32-237
               
               
               Cow position:chr21:13488443-13488657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-243
               
               
               Cow position:chr21:24131001-24131205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:32-256
               
               
               Cow position:chr21:34391054-34390826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:32-269
               
               
               Cow position:chr21:9940273-9940028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:32-273
               
               
               Cow position:chr21:24598582-24598824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:32-275
               
               
               Cow position:chr21:42540295-42540053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 108

               
               
               Conread position:32-277
               
               
               Cow position:chr21:28211122-28211361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:32-277
               
               
               Cow position:chr21:35354454-35354703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-277
               
               
               Cow position:chr21:47215260-47215025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 82

               
               
               Conread position:32-278
               
               
               Cow position:chr21:724965-724708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 45

               
               
               Conread position:32-282
               
               
               Cow position:chr21:28626161-28626412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-282
               
               
               Cow position:chr21:30990349-30990112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:32-282
               
               
               Cow position:chr21:31090499-31090260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:32-282
               
               
               Cow position:chr21:33210123-33210363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):134, 76

               
               
               Conread position:32-285
               
               
               Cow position:chr21:10561663-10561406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-287
               
               
               Cow position:chr21:395791-396047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:32-287
               
               
               Cow position:chr21:10000995-10001255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:32-287
               
               
               Cow position:chr21:20260400-20260140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-291
               
               
               Cow position:chr21:18828385-18828120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-291
               
               
               Cow position:chr21:27229874-27229611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 111

               
               
               Conread position:32-292
               
               
               Cow position:chr21:42348753-42348511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-293
               
               
               Cow position:chr21:10673052-10673307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):241, 28

               
               
               Conread position:32-294
               
               
               Cow position:chr21:30592383-30592122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:32-295
               
               
               Cow position:chr21:7673047-7673308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:32-295
               
               
               Cow position:chr21:31691403-31691670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-296
               
               
               Cow position:chr21:44565786-44565533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:32-297
               
               
               Cow position:chr21:12462049-12461773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:32-297
               
               
               Cow position:chr21:15976553-15976822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:32-297
               
               
               Cow position:chr21:26648086-26647826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:32-297
               
               
               Cow position:chr21:29002237-29001967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:32-297
               
               
               Cow position:chr21:33982884-33982617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:32-297
               
               
               Cow position:chr21:48234238-48233975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:32-298
               
               
               Cow position:chr21:31253464-31253728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:32-301
               
               
               Cow position:chr21:4399718-4399997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:32-301
               
               
               Cow position:chr21:17643046-17642792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:32-301
               
               
               Cow position:chr21:30222265-30222539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 63

               
               
               Conread position:32-302
               
               
               Cow position:chr21:3361090-3360820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:32-302
               
               
               Cow position:chr21:6833969-6834246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:32-302
               
               
               Cow position:chr21:23586801-23587076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:32-305
               
               
               Cow position:chr21:28733991-28733715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:32-305
               
               
               Cow position:chr21:42414180-42413900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:32-306
               
               
               Cow position:chr21:29978835-29978560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:32-306
               
               
               Cow position:chr21:37299390-37299661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:32-308
               
               
               Cow position:chr21:9990437-9990711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-309
               
               
               Cow position:chr21:30250269-30250002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:32-310
               
               
               Cow position:chr21:42841677-42841394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:32-311
               
               
               Cow position:chr21:7581985-7581701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:32-311
               
               
               Cow position:chr21:18790639-18790362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:32-311
               
               
               Cow position:chr21:24642439-24642724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:32-311
               
               
               Cow position:chr21:27569239-27568968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:32-311
               
               
               Cow position:chr21:27624630-27624903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):204, 73

               
               
               Conread position:32-311
               
               
               Cow position:chr21:36795521-36795811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-312
               
               
               Cow position:chr21:12801826-12801536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 108

               
               
               Conread position:32-316
               
               
               Cow position:chr21:42135699-42135407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 134

               
               
               Conread position:32-318
               
               
               Cow position:chr21:12617058-12617371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 275

               
               
               Conread position:32-320
               
               
               Cow position:chr21:44825964-44825668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:32-321
               
               
               Cow position:chr21:11740195-11739910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:32-322
               
               
               Cow position:chr21:20152868-20153165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:32-322
               
               
               Cow position:chr21:23322159-23321863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:32-322
               
               
               Cow position:chr21:27810329-27810600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr21:41974454-41974159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 169

               
               
               Conread position:33-284
               
               
               Cow position:chr21:22860921-22861178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:33-287
               
               
               Cow position:chr21:22465119-22465370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:33-298
               
               
               Cow position:chr21:27863594-27863323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):30, 127

               
               
               Conread position:33-301
               
               
               Cow position:chr21:19258751-19259013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:33-301
               
               
               Cow position:chr21:37479881-37480159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:33-304
               
               
               Cow position:chr21:2657742-2658006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):236, 31

               
               
               Conread position:33-304
               
               
               Cow position:chr21:42022212-42022472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):255, 52

               
               
               Conread position:33-306
               
               
               Cow position:chr21:17183842-17184116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:33-308
               
               
               Cow position:chr21:13365260-13365545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):75, 131

               
               
               Conread position:33-311
               
               
               Cow position:chr21:42384431-42384713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:33-314
               
               
               Cow position:chr21:45330026-45329746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:33-322
               
               
               Cow position:chr21:20160605-20160887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:34-224
               
               
               Cow position:chr21:23192591-23192392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:34-257
               
               
               Cow position:chr21:16187885-16187657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:34-294
               
               
               Cow position:chr21:34654000-34654260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:34-297
               
               
               Cow position:chr21:5898476-5898211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:34-302
               
               
               Cow position:chr21:36297413-36297689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:34-322
               
               
               Cow position:chr21:23535636-23535920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:35-241
               
               
               Cow position:chr21:10601450-10601241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:35-286
               
               
               Cow position:chr21:46552182-46551922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:35-287
               
               
               Cow position:chr21:28190956-28191212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:35-296
               
               
               Cow position:chr21:16569825-16570087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:35-297
               
               
               Cow position:chr21:28989538-28989804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:35-302
               
               
               Cow position:chr21:9416170-9416446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:35-306
               
               
               Cow position:chr21:26244844-26245113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:35-308
               
               
               Cow position:chr21:30835286-30835564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:35-314
               
               
               Cow position:chr21:30849023-30848740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:35-318
               
               
               Cow position:chr21:36909858-36910142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:35-322
               
               
               Cow position:chr21:20262409-20262136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:36-298
               
               
               Cow position:chr21:41579676-41579949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:36-301
               
               
               Cow position:chr21:4280747-4280481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:36-303
               
               
               Cow position:chr21:33263774-33264040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 101

               
               
               Conread position:36-306
               
               
               Cow position:chr21:32339813-32339541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:36-310
               
               
               Cow position:chr21:45473832-45473554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:36-312
               
               
               Cow position:chr21:33645-33924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:36-322
               
               
               Cow position:chr21:46962-47255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:36-322
               
               
               Cow position:chr21:24858240-24858524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:37-308
               
               
               Cow position:chr21:47719373-47719100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 197

               
               
               Conread position:37-309
               
               
               Cow position:chr21:46264098-46264372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:37-314
               
               
               Cow position:chr21:6713599-6713316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:38-293
               
               
               Cow position:chr21:33414158-33413902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 113

               
               
               Conread position:39-297
               
               
               Cow position:chr21:40266049-40266313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:39-298
               
               
               Cow position:chr21:1511219-1511480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:39-315
               
               
               Cow position:chr21:8349256-8349534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:40-314
               
               
               Cow position:chr21:641512-641792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 111

               
               
               Conread position:41-275
               
               
               Cow position:chr21:8125868-8125637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:42-313
               
               
               Cow position:chr21:5392608-5392329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:46-297
               
               
               Cow position:chr21:32559424-32559175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:48-277
               
               
               Cow position:chr21:297689-297924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):5, 92

               
               
               Conread position:49-296
               
               
               Cow position:chr21:8426379-8426634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:54-322
               
               
               Cow position:chr21:868982-868711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:55-322
               
               
               Cow position:chr21:829258-829002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:57-322
               
               
               Cow position:chr21:22014133-22014399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:74-298
               
               
               Cow position:chr21:674655-674864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:80-315
               
               
               Cow position:chr21:7169663-7169896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:85-308
               
               
               Cow position:chr21:29014580-29014357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):193, 58

               
               
               Conread position:86-276
               
               
               Cow position:chr21:12104346-12104535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:89-304
               
               
               Cow position:chr21:9334470-9334685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:91-311
               
               
               Cow position:chr21:7268894-7268678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):188, 13

               
               
               Conread position:93-302
               
               
               Cow position:chr21:21615764-21615975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):33, 195

               
               
               Conread position:94-254
               
               
               Cow position:chr21:46143949-46144106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-281
               
               
               Cow position:chr21:6387991-6388173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:94-298
               
               
               Cow position:chr21:30980587-30980387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr21:742276-742471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr21:28030279-28030482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-309
               
               
               Cow position:chr21:10633649-10633441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:94-314
               
               
               Cow position:chr21:7768425-7768643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:94-320
               
               
               Cow position:chr21:13585063-13584846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):180, 47

               
               
               Conread position:94-322
               
               
               Cow position:chr21:9256666-9256445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):187, 46

               
               
               Conread position:94-322
               
               
               Cow position:chr21:17193762-17193540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 48

               
               
               Conread position:94-322
               
               
               Cow position:chr21:28237721-28237491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:95-305
               
               
               Cow position:chr21:471669-471874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):186, 31

               
               
               Conread position:96-269
               
               
               Cow position:chr21:20183064-20183233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:101-301
               
               
               Cow position:chr21:47160215-47160413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):185, 14

               
               
               Conread position:101-322
               
               
               Cow position:chr21:71583-71794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:104-254
               
               
               Cow position:chr21:46599360-46599508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:104-274
               
               
               Cow position:chr21:40192300-40192137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:104-297
               
               
               Cow position:chr21:14126288-14126469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):185, 29

               
               
               Conread position:104-314
               
               
               Cow position:chr21:7394284-7394081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):187, 31

               
               
               Conread position:104-314
               
               
               Cow position:chr21:19240876-19240665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:105-322
               
               
               Cow position:chr21:41522405-41522200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:106-302
               
               
               Cow position:chr21:36508244-36508429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:106-322
               
               
               Cow position:chr21:38720255-38720460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:106-322
               
               
               Cow position:chr21:47363735-47363514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:113-292
               
               
               Cow position:chr21:41046814-41046991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:113-311
               
               
               Cow position:chr21:19360167-19359972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:114-296
               
               
               Cow position:chr21:19868946-19868766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:114-311
               
               
               Cow position:chr21:36682332-36682529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:122-314
               
               
               Cow position:chr21:41287775-41287588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:129-302
               
               
               Cow position:chr21:43259242-43259414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):133, 14

               
               
               Conread position:130-314
               
               
               Cow position:chr21:31279280-31279461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:131-282
               
               
               Cow position:chr21:22850948-22851096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):148, 11

               
               
               Conread position:132-309
               
               
               Cow position:chr21:11057854-11057681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:132-322
               
               
               Cow position:chr21:17252953-17252769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:133-305
               
               
               Cow position:chr21:28907518-28907348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 76

               
               
               Conread position:137-291
               
               
               Cow position:chr21:46451922-46451770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:137-320
               
               
               Cow position:chr21:9418125-9417939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):139, 72

               
               
               Conread position:138-302
               
               
               Cow position:chr21:16498550-16498711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:142-302
               
               
               Cow position:chr21:24875386-24875548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:142-302
               
               
               Cow position:chr21:39393783-39393944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:143-297
               
               
               Cow position:chr21:6851208-6851362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-322
               
               
               Cow position:chr21:41610203-41610387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr21:7088638-7088808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr21:44592171-44592004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:146-322
               
               
               Cow position:chr21:20163747-20163916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:152-311
               
               
               Cow position:chr21:5342049-5341889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:154-297
               
               
               Cow position:chr21:25014979-25014843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:156-298
               
               
               Cow position:chr21:8625227-8625364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:156-314
               
               
               Cow position:chr21:30243632-30243477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:158-302
               
               
               Cow position:chr21:14228229-14228085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-298
               
               
               Cow position:chr21:15012495-15012630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-301
               
               
               Cow position:chr21:25012138-25012275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:163-307
               
               
               Cow position:chr21:40820797-40820654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:163-314
               
               
               Cow position:chr21:5486458-5486298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr21:38692256-38692413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):144, 46

               
               
               Conread position:166-322
               
               
               Cow position:chr21:46767179-46767336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 43

               
               
               Conread position:167-297
               
               
               Cow position:chr21:20174378-20174508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-298
               
               
               Cow position:chr21:13043961-13043829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:169-302
               
               
               Cow position:chr21:30657932-30658065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-301
               
               
               Cow position:chr21:11182620-11182747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):100, 91

               
               
               Conread position:174-322
               
               
               Cow position:chr21:17790891-17790746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:176-305
               
               
               Cow position:chr21:30622708-30622836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:178-311
               
               
               Cow position:chr21:11363737-11363870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:179-321
               
               
               Cow position:chr21:8986094-8986233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:180-302
               
               
               Cow position:chr21:8506473-8506351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-302
               
               
               Cow position:chr21:8509361-8509239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:187-322
               
               
               Cow position:chr21:27744105-27744237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:190-322
               
               
               Cow position:chr21:41957128-41957003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:200-314
               
               
               Cow position:chr21:40930382-40930268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:204-322
               
               
               Cow position:chr21:39845690-39845810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-267
               
               
               Cow position:chr22:1975437-1975702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:1-299
               
               
               Cow position:chr22:22612932-22613229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 149

               
               
               Conread position:1-311
               
               
               Cow position:chr22:34750502-34750812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:1-320
               
               
               Cow position:chr22:8732737-8732421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 138

               
               
               Conread position:2-286
               
               
               Cow position:chr22:23249882-23249615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):209, 10

               
               
               Conread position:2-297
               
               
               Cow position:chr22:41898618-41898327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:2-298
               
               
               Cow position:chr22:7967528-7967828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:2-306
               
               
               Cow position:chr22:43119902-43119597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:6-207
               
               
               Cow position:chr22:10585875-10585670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-224
               
               
               Cow position:chr22:43812593-43812371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-228
               
               
               Cow position:chr22:26097793-26097566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 215

               
               
               Conread position:6-235
               
               
               Cow position:chr22:3993445-3993670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-277
               
               
               Cow position:chr22:864685-864412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 6

               
               
               Conread position:6-277
               
               
               Cow position:chr22:25361316-25361587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:6-298
               
               
               Cow position:chr22:18838087-18838379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:6-308
               
               
               Cow position:chr22:10314903-10315210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 211

               
               
               Conread position:6-311
               
               
               Cow position:chr22:37324372-37324678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-318
               
               
               Cow position:chr22:13840963-13841282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:6-322
               
               
               Cow position:chr22:15039349-15039043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):99, 6

               
               
               Conread position:6-322
               
               
               Cow position:chr22:18021189-18020888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-314
               
               
               Cow position:chr22:34441800-34441491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:9-314
               
               
               Cow position:chr22:8882849-8883151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:9-320
               
               
               Cow position:chr22:14245600-14245299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 14

               
               
               Conread position:10-207
               
               
               Cow position:chr22:27291927-27292124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):98, 129

               
               
               Conread position:10-276
               
               
               Cow position:chr22:23856878-23857148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:10-277
               
               
               Cow position:chr22:13300245-13300514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 129

               
               
               Conread position:10-301
               
               
               Cow position:chr22:43397847-43398131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-310
               
               
               Cow position:chr22:3316954-3317256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 105

               
               
               Conread position:10-311
               
               
               Cow position:chr22:16621003-16621318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:10-314
               
               
               Cow position:chr22:13957813-13957504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:10-322
               
               
               Cow position:chr22:2627400-2627729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:11-293
               
               
               Cow position:chr22:30483750-30484034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 147

               
               
               Conread position:11-302
               
               
               Cow position:chr22:8733497-8733209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):194, 10

               
               
               Conread position:11-313
               
               
               Cow position:chr22:6097192-6096876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:13-277
               
               
               Cow position:chr22:9977654-9977912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:19-275
               
               
               Cow position:chr22:14638643-14638376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:19-291
               
               
               Cow position:chr22:2523807-2524080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:19-297
               
               
               Cow position:chr22:2216665-2216933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:19-301
               
               
               Cow position:chr22:8357455-8357713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-311
               
               
               Cow position:chr22:3965026-3965323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:19-322
               
               
               Cow position:chr22:22861067-22860770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:20-322
               
               
               Cow position:chr22:3315953-3316243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 88

               
               
               Conread position:23-322
               
               
               Cow position:chr22:3251149-3250842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:26-275
               
               
               Cow position:chr22:26184314-26184060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 124

               
               
               Conread position:26-298
               
               
               Cow position:chr22:40789417-40789689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 113

               
               
               Conread position:27-230
               
               
               Cow position:chr22:10678135-10677935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 110

               
               
               Conread position:27-273
               
               
               Cow position:chr22:21393470-21393215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:27-291
               
               
               Cow position:chr22:25743102-25742832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 123

               
               
               Conread position:27-298
               
               
               Cow position:chr22:15568165-15567893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:28-309
               
               
               Cow position:chr22:32895067-32895354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:28-310
               
               
               Cow position:chr22:37029749-37029472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 124

               
               
               Conread position:29-274
               
               
               Cow position:chr22:9283747-9283498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:29-274
               
               
               Cow position:chr22:45845997-45846242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 102

               
               
               Conread position:29-276
               
               
               Cow position:chr22:41245096-41245356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:29-286
               
               
               Cow position:chr22:10685237-10684978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:29-296
               
               
               Cow position:chr22:9520997-9521266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 52

               
               
               Conread position:29-298
               
               
               Cow position:chr22:877366-877641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:29-298
               
               
               Cow position:chr22:24066383-24066109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 189

               
               
               Conread position:29-310
               
               
               Cow position:chr22:26658906-26659176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:29-314
               
               
               Cow position:chr22:40349201-40349482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:29-322
               
               
               Cow position:chr22:8324100-8324389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:29-322
               
               
               Cow position:chr22:26339607-26339905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:30-314
               
               
               Cow position:chr22:3301474-3301195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:31-240
               
               
               Cow position:chr22:14882256-14882050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:31-293
               
               
               Cow position:chr22:34616156-34616425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:31-298
               
               
               Cow position:chr22:21355287-21355014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:32-170
               
               
               Cow position:chr22:45685171-45685024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:32-207
               
               
               Cow position:chr22:41271145-41270968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-224
               
               
               Cow position:chr22:226598-226404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:32-228
               
               
               Cow position:chr22:1874547-1874747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:32-228
               
               
               Cow position:chr22:4043786-4043987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:32-241
               
               
               Cow position:chr22:911952-912165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):76, 134

               
               
               Conread position:32-241
               
               
               Cow position:chr22:17993178-17992964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-272
               
               
               Cow position:chr22:19775577-19775336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:32-274
               
               
               Cow position:chr22:34398604-34398357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:32-277
               
               
               Cow position:chr22:845756-846006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:32-277
               
               
               Cow position:chr22:1289661-1289426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:32-277
               
               
               Cow position:chr22:4645627-4645874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:32-277
               
               
               Cow position:chr22:30699033-30699281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:32-280
               
               
               Cow position:chr22:26141130-26141380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:32-281
               
               
               Cow position:chr22:11458682-11458922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:32-281
               
               
               Cow position:chr22:19047964-19047709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:32-282
               
               
               Cow position:chr22:590193-590447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:32-284
               
               
               Cow position:chr22:3367045-3367295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:32-284
               
               
               Cow position:chr22:15090594-15090851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):30, 251

               
               
               Conread position:32-293
               
               
               Cow position:chr22:13861443-13861695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):60, 99

               
               
               Conread position:32-293
               
               
               Cow position:chr22:21502597-21502863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 122

               
               
               Conread position:32-293
               
               
               Cow position:chr22:25943330-25943594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:32-293
               
               
               Cow position:chr22:40071835-40072096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:32-293
               
               
               Cow position:chr22:40374460-40374726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:32-294
               
               
               Cow position:chr22:29290279-29290025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):221, 113

               
               
               Conread position:32-295
               
               
               Cow position:chr22:17814078-17814353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):24, 193

               
               
               Conread position:32-296
               
               
               Cow position:chr22:18259078-18259340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 74

               
               
               Conread position:32-296
               
               
               Cow position:chr22:20626695-20626960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:32-296
               
               
               Cow position:chr22:39696145-39696425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):71, 110

               
               
               Conread position:32-297
               
               
               Cow position:chr22:4563216-4563486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:32-297
               
               
               Cow position:chr22:6327912-6327642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:32-298
               
               
               Cow position:chr22:534351-534623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:32-298
               
               
               Cow position:chr22:8840441-8840729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:32-299
               
               
               Cow position:chr22:30049715-30049441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:32-300
               
               
               Cow position:chr22:15950525-15950260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:32-301
               
               
               Cow position:chr22:1590877-1591150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-301
               
               
               Cow position:chr22:4356948-4357216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:32-301
               
               
               Cow position:chr22:10339259-10338992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):64, 114

               
               
               Conread position:32-301
               
               
               Cow position:chr22:10567846-10567587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:32-301
               
               
               Cow position:chr22:12803531-12803258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:32-301
               
               
               Cow position:chr22:28640296-28640025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-301
               
               
               Cow position:chr22:30818065-30818339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 235

               
               
               Conread position:32-302
               
               
               Cow position:chr22:12315665-12315938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:32-302
               
               
               Cow position:chr22:24611226-24610967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr22:26786211-26786488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:32-302
               
               
               Cow position:chr22:33399627-33399360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:32-302
               
               
               Cow position:chr22:44717567-44717849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:32-303
               
               
               Cow position:chr22:9127260-9127537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:32-303
               
               
               Cow position:chr22:46351527-46351265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:32-304
               
               
               Cow position:chr22:10532356-10532630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:32-305
               
               
               Cow position:chr22:1068059-1067783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-305
               
               
               Cow position:chr22:38977701-38977974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:32-305
               
               
               Cow position:chr22:39508188-39507910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:32-305
               
               
               Cow position:chr22:42635577-42635302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:32-306
               
               
               Cow position:chr22:11613278-11613554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:32-306
               
               
               Cow position:chr22:21012244-21012516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:32-306
               
               
               Cow position:chr22:28665139-28665416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:32-308
               
               
               Cow position:chr22:1563396-1563119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-308
               
               
               Cow position:chr22:2623665-2623388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-308
               
               
               Cow position:chr22:19173553-19173836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:32-310
               
               
               Cow position:chr22:23176587-23176304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:32-311
               
               
               Cow position:chr22:3950104-3950389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:32-311
               
               
               Cow position:chr22:16044567-16044279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):26, 124

               
               
               Conread position:32-311
               
               
               Cow position:chr22:21530497-21530222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:32-312
               
               
               Cow position:chr22:1651361-1651628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:32-312
               
               
               Cow position:chr22:8116233-8115950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:32-312
               
               
               Cow position:chr22:14691118-14690834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:32-314
               
               
               Cow position:chr22:5384505-5384794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):68, 120

               
               
               Conread position:32-314
               
               
               Cow position:chr22:6215703-6215416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:32-314
               
               
               Cow position:chr22:11130724-11131010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-314
               
               
               Cow position:chr22:12573062-12573346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 131

               
               
               Conread position:32-314
               
               
               Cow position:chr22:33949145-33948836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 189

               
               
               Conread position:32-314
               
               
               Cow position:chr22:37201707-37201989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:32-315
               
               
               Cow position:chr22:38107550-38107822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:32-320
               
               
               Cow position:chr22:10631230-10631528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:32-320
               
               
               Cow position:chr22:10981241-10981524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 140

               
               
               Conread position:32-320
               
               
               Cow position:chr22:23115448-23115166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):96, 110

               
               
               Conread position:32-320
               
               
               Cow position:chr22:26166766-26166476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 155

               
               
               Conread position:32-320
               
               
               Cow position:chr22:41982861-41982580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:32-321
               
               
               Cow position:chr22:10420885-10421182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr22:2403730-2404021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:32-322
               
               
               Cow position:chr22:3842485-3842767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:32-322
               
               
               Cow position:chr22:4535470-4535177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr22:6709921-6709649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:32-322
               
               
               Cow position:chr22:11813867-11813583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):103, 30

               
               
               Conread position:32-322
               
               
               Cow position:chr22:15025256-15024968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:32-322
               
               
               Cow position:chr22:16251711-16251424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-322
               
               
               Cow position:chr22:17152535-17152829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr22:21890502-21890218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:32-322
               
               
               Cow position:chr22:27274836-27274548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):252, 30

               
               
               Conread position:32-322
               
               
               Cow position:chr22:28146538-28146823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr22:30998751-30999030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr22:32698614-32698904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:32-322
               
               
               Cow position:chr22:32892553-32892840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:32-322
               
               
               Cow position:chr22:38439300-38439014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:32-322
               
               
               Cow position:chr22:40121024-40120732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:33-274
               
               
               Cow position:chr22:10669610-10669373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):127, 6

               
               
               Conread position:33-287
               
               
               Cow position:chr22:2148432-2148680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:33-287
               
               
               Cow position:chr22:10632774-10633027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:33-288
               
               
               Cow position:chr22:36633085-36633337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):62, 105

               
               
               Conread position:33-293
               
               
               Cow position:chr22:10122246-10122498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:33-297
               
               
               Cow position:chr22:12968216-12967945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:33-298
               
               
               Cow position:chr22:25539846-25540123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-302
               
               
               Cow position:chr22:4076040-4075758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:33-302
               
               
               Cow position:chr22:10161820-10162097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 210

               
               
               Conread position:33-314
               
               
               Cow position:chr22:4061091-4060807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:33-314
               
               
               Cow position:chr22:25222044-25221762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):75, 183

               
               
               Conread position:33-314
               
               
               Cow position:chr22:45807695-45807973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:33-322
               
               
               Cow position:chr22:4017332-4017622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:33-322
               
               
               Cow position:chr22:17224809-17224528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:33-322
               
               
               Cow position:chr22:18926210-18926500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:33-322
               
               
               Cow position:chr22:34726527-34726819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:34-263
               
               
               Cow position:chr22:22160580-22160815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:34-298
               
               
               Cow position:chr22:4372901-4373166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):201, 97

               
               
               Conread position:34-302
               
               
               Cow position:chr22:7882410-7882680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):74, 55

               
               
               Conread position:34-302
               
               
               Cow position:chr22:16095045-16094777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 106

               
               
               Conread position:34-302
               
               
               Cow position:chr22:27171399-27171132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:34-306
               
               
               Cow position:chr22:1848920-1849204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:34-308
               
               
               Cow position:chr22:33485746-33485485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:34-312
               
               
               Cow position:chr22:34606439-34606727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:34-314
               
               
               Cow position:chr22:15490515-15490796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:34-322
               
               
               Cow position:chr22:28356895-28357171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:35-249
               
               
               Cow position:chr22:31593002-31592781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 172

               
               
               Conread position:35-284
               
               
               Cow position:chr22:43743474-43743235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:35-292
               
               
               Cow position:chr22:15668617-15668358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:35-297
               
               
               Cow position:chr22:10294900-10295158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:35-297
               
               
               Cow position:chr22:31646350-31646614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:35-298
               
               
               Cow position:chr22:11370730-11370467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:35-301
               
               
               Cow position:chr22:8412385-8412656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:35-302
               
               
               Cow position:chr22:6494028-6494289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:35-302
               
               
               Cow position:chr22:6721216-6720952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 99

               
               
               Conread position:35-302
               
               
               Cow position:chr22:41971300-41971025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:35-308
               
               
               Cow position:chr22:28058197-28057916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 112

               
               
               Conread position:35-316
               
               
               Cow position:chr22:44180448-44180742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:35-322
               
               
               Cow position:chr22:11767193-11766907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:35-322
               
               
               Cow position:chr22:14366093-14365811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:35-322
               
               
               Cow position:chr22:27729908-27730183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:35-322
               
               
               Cow position:chr22:40048413-40048699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:36-288
               
               
               Cow position:chr22:34735726-34735979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:36-289
               
               
               Cow position:chr22:5616162-5616418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:36-302
               
               
               Cow position:chr22:21295866-21295597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:36-311
               
               
               Cow position:chr22:17764238-17764515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):72, 99

               
               
               Conread position:36-314
               
               
               Cow position:chr22:45796201-45796482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:36-318
               
               
               Cow position:chr22:28071416-28071704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:36-322
               
               
               Cow position:chr22:8138400-8138114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):243, 97

               
               
               Conread position:37-244
               
               
               Cow position:chr22:34631996-34632205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 102

               
               
               Conread position:37-291
               
               
               Cow position:chr22:8481502-8481763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:37-309
               
               
               Cow position:chr22:31153815-31154088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 252

               
               
               Conread position:37-314
               
               
               Cow position:chr22:17852766-17852497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:38-322
               
               
               Cow position:chr22:616981-617266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:39-258
               
               
               Cow position:chr22:30577384-30577599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:40-297
               
               
               Cow position:chr22:31599312-31599554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:41-314
               
               
               Cow position:chr22:13735402-13735131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:41-322
               
               
               Cow position:chr22:37947587-37947867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:42-310
               
               
               Cow position:chr22:31510504-31510241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):188, 66

               
               
               Conread position:42-319
               
               
               Cow position:chr22:13286314-13286594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:44-305
               
               
               Cow position:chr22:25387190-25387456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:44-306
               
               
               Cow position:chr22:36433103-36432842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:45-302
               
               
               Cow position:chr22:4119698-4119434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:45-322
               
               
               Cow position:chr22:19827998-19827715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:46-311
               
               
               Cow position:chr22:27431819-27431568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:48-266
               
               
               Cow position:chr22:7884859-7885082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 93

               
               
               Conread position:52-322
               
               
               Cow position:chr22:1326292-1326562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 139

               
               
               Conread position:53-302
               
               
               Cow position:chr22:44740967-44741203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:57-271
               
               
               Cow position:chr22:4011063-4011281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 75

               
               
               Conread position:57-304
               
               
               Cow position:chr22:12341074-12341328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:57-314
               
               
               Cow position:chr22:43237528-43237266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:60-311
               
               
               Cow position:chr22:1977637-1977886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 5

               
               
               Conread position:67-310
               
               
               Cow position:chr22:1870990-1871234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:73-293
               
               
               Cow position:chr22:21398004-21397781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:73-314
               
               
               Cow position:chr22:9171308-9171548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:84-276
               
               
               Cow position:chr22:12686765-12686584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:84-282
               
               
               Cow position:chr22:4137737-4137543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:85-306
               
               
               Cow position:chr22:6936177-6936386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:85-322
               
               
               Cow position:chr22:9372435-9372667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:85-322
               
               
               Cow position:chr22:18933807-18933570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 203

               
               
               Conread position:92-302
               
               
               Cow position:chr22:12749985-12749773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:92-305
               
               
               Cow position:chr22:26706888-26706676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:92-314
               
               
               Cow position:chr22:10416151-10416375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:94-298
               
               
               Cow position:chr22:23750969-23750773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 43

               
               
               Conread position:94-301
               
               
               Cow position:chr22:14214439-14214239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):140, 37

               
               
               Conread position:94-306
               
               
               Cow position:chr22:24915761-24915967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:94-306
               
               
               Cow position:chr22:34104751-34104540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-309
               
               
               Cow position:chr22:26122821-26123029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:94-310
               
               
               Cow position:chr22:1025811-1026027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):110, 41

               
               
               Conread position:94-311
               
               
               Cow position:chr22:10533517-10533731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:94-316
               
               
               Cow position:chr22:10553761-10553543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-318
               
               
               Cow position:chr22:26074846-26075066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):213, 20

               
               
               Conread position:94-322
               
               
               Cow position:chr22:4315552-4315775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr22:25237223-25236988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:95-308
               
               
               Cow position:chr22:13222037-13222251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:95-322
               
               
               Cow position:chr22:1659087-1659313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 9

               
               
               Conread position:96-322
               
               
               Cow position:chr22:12892444-12892220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:97-314
               
               
               Cow position:chr22:26056943-26056724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:101-298
               
               
               Cow position:chr22:21526850-21527036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:101-302
               
               
               Cow position:chr22:1349754-1349961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:101-302
               
               
               Cow position:chr22:29185677-29185480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):110, 36

               
               
               Conread position:101-303
               
               
               Cow position:chr22:10918642-10918445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):178, 41

               
               
               Conread position:102-314
               
               
               Cow position:chr22:42617930-42618139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:102-322
               
               
               Cow position:chr22:1983784-1983998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):175, 35

               
               
               Conread position:104-275
               
               
               Cow position:chr22:10835551-10835390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:104-302
               
               
               Cow position:chr22:24903523-24903720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:104-308
               
               
               Cow position:chr22:22266244-22266442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:104-314
               
               
               Cow position:chr22:17652367-17652573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr22:6176356-6176141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:106-276
               
               
               Cow position:chr22:28704120-28704286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:106-297
               
               
               Cow position:chr22:1500825-1501016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):107, 36

               
               
               Conread position:106-302
               
               
               Cow position:chr22:35029201-35029396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:106-305
               
               
               Cow position:chr22:12678484-12678291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:106-314
               
               
               Cow position:chr22:2101012-2100808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:107-311
               
               
               Cow position:chr22:21235497-21235296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):194, 29

               
               
               Conread position:108-308
               
               
               Cow position:chr22:23440358-23440162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:113-307
               
               
               Cow position:chr22:12527179-12526990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 23

               
               
               Conread position:114-285
               
               
               Cow position:chr22:4054642-4054480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):165, 19

               
               
               Conread position:118-302
               
               
               Cow position:chr22:12157898-12157717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:122-292
               
               
               Cow position:chr22:28672096-28672262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:124-298
               
               
               Cow position:chr22:33985848-33985679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:124-322
               
               
               Cow position:chr22:12188533-12188333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:124-322
               
               
               Cow position:chr22:12195620-12195419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:126-302
               
               
               Cow position:chr22:12902892-12902727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:129-303
               
               
               Cow position:chr22:1838264-1838438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:130-311
               
               
               Cow position:chr22:10285923-10286107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:133-306
               
               
               Cow position:chr22:24134366-24134194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):6, 78

               
               
               Conread position:137-311
               
               
               Cow position:chr22:23036127-23036302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:138-311
               
               
               Cow position:chr22:24063055-24063229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:138-322
               
               
               Cow position:chr22:1776023-1776204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 151

               
               
               Conread position:141-322
               
               
               Cow position:chr22:7832387-7832200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:143-294
               
               
               Cow position:chr22:14381628-14381779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-322
               
               
               Cow position:chr22:14141373-14141200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:145-295
               
               
               Cow position:chr22:38115164-38115313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:145-322
               
               
               Cow position:chr22:30253171-30253357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:146-306
               
               
               Cow position:chr22:4163951-4164108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:147-298
               
               
               Cow position:chr22:2109657-2109501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:147-298
               
               
               Cow position:chr22:10557252-10557403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):6, 49

               
               
               Conread position:147-308
               
               
               Cow position:chr22:12974195-12974036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:147-311
               
               
               Cow position:chr22:34930802-34930638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):126, 98

               
               
               Conread position:148-314
               
               
               Cow position:chr22:8710398-8710233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:150-306
               
               
               Cow position:chr22:26233609-26233762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:151-294
               
               
               Cow position:chr22:21905449-21905590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:152-287
               
               
               Cow position:chr22:3269510-3269375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-310
               
               
               Cow position:chr22:10323858-10324017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:154-310
               
               
               Cow position:chr22:28120700-28120862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:154-322
               
               
               Cow position:chr22:12996828-12996659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:155-297
               
               
               Cow position:chr22:23277336-23277476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):126, 54

               
               
               Conread position:162-302
               
               
               Cow position:chr22:11189019-11189159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:163-314
               
               
               Cow position:chr22:16813787-16813936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:166-310
               
               
               Cow position:chr22:22606217-22606360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:166-322
               
               
               Cow position:chr22:1523210-1523363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:167-301
               
               
               Cow position:chr22:8327739-8327871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:167-320
               
               
               Cow position:chr22:4628546-4628701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:168-311
               
               
               Cow position:chr22:6326438-6326582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:169-281
               
               
               Cow position:chr22:4012514-4012623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:169-295
               
               
               Cow position:chr22:6360189-6360063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-311
               
               
               Cow position:chr22:3997751-3997890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):116, 112

               
               
               Conread position:173-302
               
               
               Cow position:chr22:6372347-6372218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:173-322
               
               
               Cow position:chr22:45684039-45683891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:174-322
               
               
               Cow position:chr22:26188870-26189013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:175-277
               
               
               Cow position:chr22:28649718-28649616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-310
               
               
               Cow position:chr22:2184711-2184579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:178-277
               
               
               Cow position:chr22:749409-749310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-302
               
               
               Cow position:chr22:7518559-7518683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-322
               
               
               Cow position:chr22:33030802-33030950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:179-303
               
               
               Cow position:chr22:14482528-14482403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 62

               
               
               Conread position:179-322
               
               
               Cow position:chr22:35533227-35533088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:180-318
               
               
               Cow position:chr22:31308890-31309028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:182-287
               
               
               Cow position:chr22:44263383-44263488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-302
               
               
               Cow position:chr22:24890229-24890349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:187-322
               
               
               Cow position:chr22:8570920-8571057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:190-314
               
               
               Cow position:chr22:9735285-9735409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:200-311
               
               
               Cow position:chr22:41682402-41682291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-311
               
               
               Cow position:chr22:14816081-14815974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr23:416986-417218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:1-302
               
               
               Cow position:chr23:21764747-21765051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):100, 22

               
               
               Conread position:1-302
               
               
               Cow position:chr23:29069603-29069309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:3-277
               
               
               Cow position:chr23:4908340-4908609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:6-282
               
               
               Cow position:chr23:27563878-27563592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-287
               
               
               Cow position:chr23:29459254-29458980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:6-302
               
               
               Cow position:chr23:22396615-22396313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:6-306
               
               
               Cow position:chr23:15742925-15743227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):102, 139

               
               
               Conread position:6-314
               
               
               Cow position:chr23:2282336-2282037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-314
               
               
               Cow position:chr23:39775561-39775872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-320
               
               
               Cow position:chr23:5426269-5426582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 6

               
               
               Conread position:7-298
               
               
               Cow position:chr23:14164569-14164265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:8-294
               
               
               Cow position:chr23:20388804-20388526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:8-304
               
               
               Cow position:chr23:1585549-1585264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):192, 7

               
               
               Conread position:9-263
               
               
               Cow position:chr23:39806707-39806964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:9-302
               
               
               Cow position:chr23:39778242-39778533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:9-311
               
               
               Cow position:chr23:11315187-11314891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):140, 100

               
               
               Conread position:10-311
               
               
               Cow position:chr23:29626256-29626564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:11-297
               
               
               Cow position:chr23:1583373-1583655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:11-298
               
               
               Cow position:chr23:7574796-7574495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:11-301
               
               
               Cow position:chr23:21452893-21452597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):97, 134

               
               
               Conread position:11-304
               
               
               Cow position:chr23:11045323-11045623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:11-305
               
               
               Cow position:chr23:25864848-25864560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:19-277
               
               
               Cow position:chr23:7360960-7361216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:19-308
               
               
               Cow position:chr23:18402442-18402149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:19-322
               
               
               Cow position:chr23:13555586-13555275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:27-286
               
               
               Cow position:chr23:27544683-27544947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:27-303
               
               
               Cow position:chr23:26841295-26841556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:27-306
               
               
               Cow position:chr23:4726641-4726927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):32, 181

               
               
               Conread position:27-315
               
               
               Cow position:chr23:20057012-20056734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 119

               
               
               Conread position:27-322
               
               
               Cow position:chr23:4968669-4968380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:27-322
               
               
               Cow position:chr23:26986417-26986120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:28-322
               
               
               Cow position:chr23:5451179-5451469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):5, 95

               
               
               Conread position:29-283
               
               
               Cow position:chr23:11845140-11845390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:29-293
               
               
               Cow position:chr23:5603419-5603161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:29-298
               
               
               Cow position:chr23:1923980-1923708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:29-301
               
               
               Cow position:chr23:24704137-24704422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:29-302
               
               
               Cow position:chr23:15287274-15287008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):39, 114

               
               
               Conread position:29-305
               
               
               Cow position:chr23:187034-187315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 120

               
               
               Conread position:29-311
               
               
               Cow position:chr23:1398182-1397894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:29-311
               
               
               Cow position:chr23:33717684-33717400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:29-314
               
               
               Cow position:chr23:24509558-24509831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):250, 79

               
               
               Conread position:29-322
               
               
               Cow position:chr23:39083309-39083601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:30-276
               
               
               Cow position:chr23:26050893-26051146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:30-277
               
               
               Cow position:chr23:16881304-16881054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):78, 5

               
               
               Conread position:30-294
               
               
               Cow position:chr23:24867163-24867435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:31-311
               
               
               Cow position:chr23:21336633-21336341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 120

               
               
               Conread position:32-203
               
               
               Cow position:chr23:16664707-16664535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:32-227
               
               
               Cow position:chr23:1599380-1599581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 136

               
               
               Conread position:32-275
               
               
               Cow position:chr23:22399264-22399512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 173

               
               
               Conread position:32-276
               
               
               Cow position:chr23:4562744-4562993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:32-277
               
               
               Cow position:chr23:8063416-8063652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:32-277
               
               
               Cow position:chr23:11473645-11473396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:32-277
               
               
               Cow position:chr23:36309280-36309529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:32-290
               
               
               Cow position:chr23:17404698-17404960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:32-291
               
               
               Cow position:chr23:16700183-16699919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:32-292
               
               
               Cow position:chr23:6592844-6592582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 122

               
               
               Conread position:32-293
               
               
               Cow position:chr23:39752977-39753238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:32-294
               
               
               Cow position:chr23:34611611-34611365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:32-295
               
               
               Cow position:chr23:1883252-1883523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:32-297
               
               
               Cow position:chr23:6995119-6994854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:32-297
               
               
               Cow position:chr23:10554149-10553880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:32-298
               
               
               Cow position:chr23:1767689-1767960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:32-298
               
               
               Cow position:chr23:2488122-2487863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:32-298
               
               
               Cow position:chr23:9599355-9599623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:32-301
               
               
               Cow position:chr23:6172803-6172546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr23:534088-534361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:32-302
               
               
               Cow position:chr23:2501994-2501722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-302
               
               
               Cow position:chr23:9268452-9268715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:32-302
               
               
               Cow position:chr23:40648865-40648599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:32-303
               
               
               Cow position:chr23:26632662-26632941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 218

               
               
               Conread position:32-306
               
               
               Cow position:chr23:5436785-5436505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:32-306
               
               
               Cow position:chr23:21502778-21502493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 119

               
               
               Conread position:32-306
               
               
               Cow position:chr23:26949058-26949334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:32-308
               
               
               Cow position:chr23:4646376-4646650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:32-309
               
               
               Cow position:chr23:13511595-13511866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 58

               
               
               Conread position:32-311
               
               
               Cow position:chr23:3409045-3408762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 74

               
               
               Conread position:32-311
               
               
               Cow position:chr23:5162285-5162574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):26, 176

               
               
               Conread position:32-311
               
               
               Cow position:chr23:20744732-20744452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:32-312
               
               
               Cow position:chr23:13599204-13599482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-314
               
               
               Cow position:chr23:5540021-5540292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):120, 37

               
               
               Conread position:32-314
               
               
               Cow position:chr23:7845152-7845438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-316
               
               
               Cow position:chr23:8698306-8698566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:32-321
               
               
               Cow position:chr23:4329822-4329514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr23:1700773-1701044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr23:3967692-3967406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:32-322
               
               
               Cow position:chr23:4972642-4972915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:32-322
               
               
               Cow position:chr23:29034176-29034471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr23:31493731-31494016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:32-322
               
               
               Cow position:chr23:33153330-33153039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:32-322
               
               
               Cow position:chr23:37065700-37066003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 270

               
               
               Conread position:33-197
               
               
               Cow position:chr23:4338743-4338582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:33-297
               
               
               Cow position:chr23:5706860-5707124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:33-300
               
               
               Cow position:chr23:3394633-3394361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:33-301
               
               
               Cow position:chr23:18296667-18296940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:33-302
               
               
               Cow position:chr23:23409597-23409865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:33-311
               
               
               Cow position:chr23:38455322-38455035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:33-314
               
               
               Cow position:chr23:39049563-39049293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:34-294
               
               
               Cow position:chr23:6367470-6367728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:35-287
               
               
               Cow position:chr23:1721122-1720864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:35-297
               
               
               Cow position:chr23:29345894-29345641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:35-298
               
               
               Cow position:chr23:6244721-6244467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:35-311
               
               
               Cow position:chr23:4529021-4528734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 131

               
               
               Conread position:35-315
               
               
               Cow position:chr23:12363756-12363471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:35-322
               
               
               Cow position:chr23:3282253-3281963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 107

               
               
               Conread position:35-322
               
               
               Cow position:chr23:4579173-4578887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:36-277
               
               
               Cow position:chr23:35938205-35938454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 116

               
               
               Conread position:36-293
               
               
               Cow position:chr23:18902184-18901930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:36-322
               
               
               Cow position:chr23:1290159-1290453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:37-302
               
               
               Cow position:chr23:32480172-32479882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:37-316
               
               
               Cow position:chr23:30950824-30951102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:42-287
               
               
               Cow position:chr23:3434041-3433794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:42-302
               
               
               Cow position:chr23:5732419-5732683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:43-293
               
               
               Cow position:chr23:18286068-18286317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:43-293
               
               
               Cow position:chr23:22414423-22414180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:44-214
               
               
               Cow position:chr23:2801813-2801637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:45-308
               
               
               Cow position:chr23:16076287-16076025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):147, 35

               
               
               Conread position:45-311
               
               
               Cow position:chr23:12334079-12334352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:47-302
               
               
               Cow position:chr23:5795352-5795611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:49-277
               
               
               Cow position:chr23:1438173-1438401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:52-301
               
               
               Cow position:chr23:11212387-11212640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:56-302
               
               
               Cow position:chr23:26824975-26825197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:56-322
               
               
               Cow position:chr23:307341-307605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:64-297
               
               
               Cow position:chr23:283496-283265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:64-306
               
               
               Cow position:chr23:1876602-1876849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:67-322
               
               
               Cow position:chr23:306419-306672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:68-314
               
               
               Cow position:chr23:24685147-24685387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:69-322
               
               
               Cow position:chr23:22298133-22297883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:85-284
               
               
               Cow position:chr23:2799500-2799697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):188, 48

               
               
               Conread position:85-305
               
               
               Cow position:chr23:3814363-3814142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:85-318
               
               
               Cow position:chr23:39275808-39276050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:85-322
               
               
               Cow position:chr23:24926730-24926974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:86-322
               
               
               Cow position:chr23:24701169-24700930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:92-298
               
               
               Cow position:chr23:3279530-3279334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:93-277
               
               
               Cow position:chr23:6148116-6147927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:94-271
               
               
               Cow position:chr23:4470572-4470397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-272
               
               
               Cow position:chr23:19769517-19769688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):128, 46

               
               
               Conread position:94-287
               
               
               Cow position:chr23:1222310-1222118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-293
               
               
               Cow position:chr23:16961225-16961422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-296
               
               
               Cow position:chr23:17486897-17486696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:94-296
               
               
               Cow position:chr23:20539312-20539511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):163, 43

               
               
               Conread position:94-297
               
               
               Cow position:chr23:18749136-18748940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):185, 39

               
               
               Conread position:94-297
               
               
               Cow position:chr23:20002184-20002384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:94-300
               
               
               Cow position:chr23:1701100-1701307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:94-301
               
               
               Cow position:chr23:33628855-33629062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):171, 43

               
               
               Conread position:94-306
               
               
               Cow position:chr23:3293621-3293832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:94-308
               
               
               Cow position:chr23:35247295-35247506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-311
               
               
               Cow position:chr23:3430998-3431216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):184, 39

               
               
               Conread position:94-311
               
               
               Cow position:chr23:21440072-21439858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):187, 43

               
               
               Conread position:94-314
               
               
               Cow position:chr23:5881589-5881374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-319
               
               
               Cow position:chr23:40637183-40637409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:95-262
               
               
               Cow position:chr23:1733093-1733254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:95-276
               
               
               Cow position:chr23:5237500-5237312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 42

               
               
               Conread position:96-280
               
               
               Cow position:chr23:3830269-3830089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:96-306
               
               
               Cow position:chr23:35369114-35368911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:96-322
               
               
               Cow position:chr23:35965074-35965296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:101-298
               
               
               Cow position:chr23:1589522-1589719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 39

               
               
               Conread position:101-298
               
               
               Cow position:chr23:1863408-1863597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:101-301
               
               
               Cow position:chr23:40391411-40391609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:101-306
               
               
               Cow position:chr23:18822926-18823127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:101-314
               
               
               Cow position:chr23:8917738-8917533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-275
               
               
               Cow position:chr23:5400605-5400768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:104-280
               
               
               Cow position:chr23:1403865-1403694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:104-291
               
               
               Cow position:chr23:13202422-13202236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:104-292
               
               
               Cow position:chr23:1697616-1697795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:104-293
               
               
               Cow position:chr23:1532845-1533030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):170, 26

               
               
               Conread position:104-296
               
               
               Cow position:chr23:40995111-40995298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-297
               
               
               Cow position:chr23:1981715-1981532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):172, 22

               
               
               Conread position:104-308
               
               
               Cow position:chr23:22105500-22105700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:104-314
               
               
               Cow position:chr23:19565388-19565595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-315
               
               
               Cow position:chr23:40275605-40275401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:104-320
               
               
               Cow position:chr23:1614719-1614512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:104-320
               
               
               Cow position:chr23:14523923-14524142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):170, 57

               
               
               Conread position:104-322
               
               
               Cow position:chr23:349011-348793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):190, 41

               
               
               Conread position:104-322
               
               
               Cow position:chr23:24966525-24966314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:105-296
               
               
               Cow position:chr23:39330349-39330164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:106-311
               
               
               Cow position:chr23:38208667-38208867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:108-315
               
               
               Cow position:chr23:21309469-21309268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:109-311
               
               
               Cow position:chr23:3244522-3244326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:115-301
               
               
               Cow position:chr23:2160685-2160507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:115-322
               
               
               Cow position:chr23:385361-385161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:122-322
               
               
               Cow position:chr23:360733-360534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:125-316
               
               
               Cow position:chr23:14895718-14895526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:130-322
               
               
               Cow position:chr23:26283684-26283876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:132-302
               
               
               Cow position:chr23:20093279-20093111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:134-322
               
               
               Cow position:chr23:25990471-25990286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:137-317
               
               
               Cow position:chr23:32411880-32412056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:141-297
               
               
               Cow position:chr23:7709763-7709918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:141-305
               
               
               Cow position:chr23:5785817-5785981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-302
               
               
               Cow position:chr23:17231124-17231282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):144, 71

               
               
               Conread position:143-314
               
               
               Cow position:chr23:22586855-22587025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:145-294
               
               
               Cow position:chr23:2358857-2359008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:145-294
               
               
               Cow position:chr23:13624821-13624679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:145-297
               
               
               Cow position:chr23:23197323-23197470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:145-310
               
               
               Cow position:chr23:18605430-18605265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):134, 64

               
               
               Conread position:145-322
               
               
               Cow position:chr23:1760869-1760686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr23:3223471-3223295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):144, 75

               
               
               Conread position:145-322
               
               
               Cow position:chr23:3234805-3234631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr23:5449682-5449861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):135, 49

               
               
               Conread position:147-314
               
               
               Cow position:chr23:10497678-10497843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):157, 62

               
               
               Conread position:147-322
               
               
               Cow position:chr23:22238843-22238670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:150-315
               
               
               Cow position:chr23:1877914-1877749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-314
               
               
               Cow position:chr23:1194509-1194348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:152-314
               
               
               Cow position:chr23:4501736-4501891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:153-314
               
               
               Cow position:chr23:17597411-17597570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:155-314
               
               
               Cow position:chr23:1652988-1653145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:156-297
               
               
               Cow position:chr23:22668517-22668376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:158-311
               
               
               Cow position:chr23:13674042-13673887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:158-314
               
               
               Cow position:chr23:5686632-5686474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr23:35656406-35656556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:166-298
               
               
               Cow position:chr23:25968422-25968551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 43

               
               
               Conread position:167-314
               
               
               Cow position:chr23:27848995-27849143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:168-316
               
               
               Cow position:chr23:204280-204430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:170-322
               
               
               Cow position:chr23:5448124-5447975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:173-301
               
               
               Cow position:chr23:36022780-36022656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:175-307
               
               
               Cow position:chr23:207240-207374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:175-314
               
               
               Cow position:chr23:24718795-24718656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 56

               
               
               Conread position:179-322
               
               
               Cow position:chr23:19179365-19179221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:180-311
               
               
               Cow position:chr23:23114070-23114201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-312
               
               
               Cow position:chr23:18354661-18354792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:183-311
               
               
               Cow position:chr23:12602460-12602333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:187-302
               
               
               Cow position:chr23:4979263-4979150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:198-318
               
               
               Cow position:chr23:41099746-41099623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:201-322
               
               
               Cow position:chr23:35199373-35199506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1-314
               
               
               Cow position:chr24:2402572-2402251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):77, 143

               
               
               Conread position:1-314
               
               
               Cow position:chr24:31816389-31816697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:2-191
               
               
               Cow position:chr24:41512146-41511958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 62

               
               
               Conread position:2-277
               
               
               Cow position:chr24:40300966-40301239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:4-277
               
               
               Cow position:chr24:28303547-28303273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:4-322
               
               
               Cow position:chr24:24457443-24457119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):25, 141

               
               
               Conread position:6-276
               
               
               Cow position:chr24:211790-212068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-282
               
               
               Cow position:chr24:43371053-43371331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:6-298
               
               
               Cow position:chr24:33222135-33221829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):98, 145

               
               
               Conread position:6-302
               
               
               Cow position:chr24:5141756-5142048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-311
               
               
               Cow position:chr24:18970700-18970391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:6-311
               
               
               Cow position:chr24:29673324-29673636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 144

               
               
               Conread position:6-320
               
               
               Cow position:chr24:12851530-12851830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:8-275
               
               
               Cow position:chr24:43364166-43364438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:8-276
               
               
               Cow position:chr24:30897728-30897457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:8-317
               
               
               Cow position:chr24:34008764-34008449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:9-297
               
               
               Cow position:chr24:1269608-1269886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):99, 138

               
               
               Conread position:9-306
               
               
               Cow position:chr24:15347403-15347701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:10-322
               
               
               Cow position:chr24:31159429-31159742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:11-273
               
               
               Cow position:chr24:45004768-45005025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr24:6102636-6102952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:13-308
               
               
               Cow position:chr24:33153592-33153890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:16-322
               
               
               Cow position:chr24:15288641-15288947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:27-298
               
               
               Cow position:chr24:32204966-32204690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):81, 115

               
               
               Conread position:27-302
               
               
               Cow position:chr24:34396346-34396073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:27-308
               
               
               Cow position:chr24:43200448-43200161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:27-311
               
               
               Cow position:chr24:16556804-16556532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:27-311
               
               
               Cow position:chr24:33465780-33465506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 114

               
               
               Conread position:27-318
               
               
               Cow position:chr24:29606205-29605911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:28-322
               
               
               Cow position:chr24:35576706-35576415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:29-297
               
               
               Cow position:chr24:27748477-27748743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):259, 75

               
               
               Conread position:29-305
               
               
               Cow position:chr24:17832984-17832711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:29-321
               
               
               Cow position:chr24:16089066-16089351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 94

               
               
               Conread position:29-322
               
               
               Cow position:chr24:12200583-12200286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:29-322
               
               
               Cow position:chr24:18025138-18024849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:30-278
               
               
               Cow position:chr24:3430565-3430816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:30-311
               
               
               Cow position:chr24:18331555-18331836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:31-322
               
               
               Cow position:chr24:18485165-18484873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-192
               
               
               Cow position:chr24:35794903-35794738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:32-228
               
               
               Cow position:chr24:6487756-6487949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:32-230
               
               
               Cow position:chr24:17492148-17492333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:32-272
               
               
               Cow position:chr24:7001231-7000987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:32-272
               
               
               Cow position:chr24:39483310-39483553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:32-274
               
               
               Cow position:chr24:19736495-19736255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:32-277
               
               
               Cow position:chr24:30178068-30178340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:32-277
               
               
               Cow position:chr24:31036186-31036432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):50, 105

               
               
               Conread position:32-277
               
               
               Cow position:chr24:39226835-39227076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:32-282
               
               
               Cow position:chr24:27824291-27824549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:32-286
               
               
               Cow position:chr24:24061969-24061713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 36

               
               
               Conread position:32-292
               
               
               Cow position:chr24:24250561-24250819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):66, 109

               
               
               Conread position:32-295
               
               
               Cow position:chr24:18732290-18732001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:32-295
               
               
               Cow position:chr24:27608265-27608008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):57, 103

               
               
               Conread position:32-297
               
               
               Cow position:chr24:24491177-24490916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:32-297
               
               
               Cow position:chr24:31812021-31812292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:32-297
               
               
               Cow position:chr24:33372387-33372655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:32-297
               
               
               Cow position:chr24:43927489-43927233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:32-298
               
               
               Cow position:chr24:30229304-30229582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:32-300
               
               
               Cow position:chr24:18357220-18356947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:32-302
               
               
               Cow position:chr24:11886994-11887264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:32-302
               
               
               Cow position:chr24:20874513-20874788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:32-302
               
               
               Cow position:chr24:29679474-29679204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:32-303
               
               
               Cow position:chr24:17294359-17294090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:32-304
               
               
               Cow position:chr24:15861768-15861485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:32-306
               
               
               Cow position:chr24:15373242-15373516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:32-306
               
               
               Cow position:chr24:27906271-27906549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:32-308
               
               
               Cow position:chr24:23187084-23186805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:32-310
               
               
               Cow position:chr24:19769326-19769610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:32-310
               
               
               Cow position:chr24:28062785-28063062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-311
               
               
               Cow position:chr24:11119117-11119393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):18, 115

               
               
               Conread position:32-311
               
               
               Cow position:chr24:32070799-32071077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:32-314
               
               
               Cow position:chr24:17311376-17311104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:32-314
               
               
               Cow position:chr24:30314199-30313909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 228

               
               
               Conread position:32-314
               
               
               Cow position:chr24:31359159-31359438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:32-320
               
               
               Cow position:chr24:3165654-3165938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:32-320
               
               
               Cow position:chr24:16268280-16268005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:32-321
               
               
               Cow position:chr24:28327251-28326953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):72, 177

               
               
               Conread position:32-322
               
               
               Cow position:chr24:352772-352484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr24:6912518-6912235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 52

               
               
               Conread position:32-322
               
               
               Cow position:chr24:17104737-17104449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:32-322
               
               
               Cow position:chr24:19535419-19535133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:32-322
               
               
               Cow position:chr24:30235706-30235992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 181

               
               
               Conread position:32-322
               
               
               Cow position:chr24:33944237-33944526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:32-322
               
               
               Cow position:chr24:34742588-34742876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:33-287
               
               
               Cow position:chr24:29063814-29063567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 99

               
               
               Conread position:33-298
               
               
               Cow position:chr24:16509804-16510080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-298
               
               
               Cow position:chr24:17860421-17860154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:33-298
               
               
               Cow position:chr24:27844686-27844425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:33-300
               
               
               Cow position:chr24:5754672-5754940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:33-302
               
               
               Cow position:chr24:29540073-29539822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):246, 75

               
               
               Conread position:33-305
               
               
               Cow position:chr24:43028488-43028219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 40

               
               
               Conread position:33-311
               
               
               Cow position:chr24:14171860-14171576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:33-322
               
               
               Cow position:chr24:37650504-37650795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:34-276
               
               
               Cow position:chr24:31324116-31324365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:34-281
               
               
               Cow position:chr24:6132038-6131785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 183

               
               
               Conread position:34-301
               
               
               Cow position:chr24:3493727-3493990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:34-305
               
               
               Cow position:chr24:28496748-28496475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:34-306
               
               
               Cow position:chr24:44987548-44987264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:34-322
               
               
               Cow position:chr24:10499049-10499338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:35-192
               
               
               Cow position:chr24:17363811-17363651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:35-311
               
               
               Cow position:chr24:201798-201520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):59, 85

               
               
               Conread position:35-316
               
               
               Cow position:chr24:36404308-36404021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:35-322
               
               
               Cow position:chr24:28990400-28990682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):72, 60

               
               
               Conread position:36-293
               
               
               Cow position:chr24:15246797-15246545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:36-296
               
               
               Cow position:chr24:17955606-17955344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:36-302
               
               
               Cow position:chr24:29586830-29587109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:36-302
               
               
               Cow position:chr24:37037736-37038007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:36-321
               
               
               Cow position:chr24:28690528-28690812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:37-322
               
               
               Cow position:chr24:20943005-20943280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:38-319
               
               
               Cow position:chr24:28319361-28319081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 73

               
               
               Conread position:40-245
               
               
               Cow position:chr24:6149866-6150073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):68, 98

               
               
               Conread position:43-297
               
               
               Cow position:chr24:15057245-15057496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):65, 168

               
               
               Conread position:43-311
               
               
               Cow position:chr24:8006155-8006422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:43-322
               
               
               Cow position:chr24:18741727-18741445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 191

               
               
               Conread position:43-322
               
               
               Cow position:chr24:32054503-32054773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 107

               
               
               Conread position:44-276
               
               
               Cow position:chr24:43967656-43967423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:44-311
               
               
               Cow position:chr24:18314104-18313817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:44-322
               
               
               Cow position:chr24:25885316-25885028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:45-276
               
               
               Cow position:chr24:24755290-24755528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:46-316
               
               
               Cow position:chr24:2675169-2675450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:46-322
               
               
               Cow position:chr24:27726168-27725891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:48-276
               
               
               Cow position:chr24:35675394-35675627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:52-314
               
               
               Cow position:chr24:39850031-39849772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:61-300
               
               
               Cow position:chr24:28233911-28234148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:67-298
               
               
               Cow position:chr24:27713536-27713302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:69-277
               
               
               Cow position:chr24:13352914-13353121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:77-322
               
               
               Cow position:chr24:39911150-39910911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:78-315
               
               
               Cow position:chr24:28600552-28600314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:85-294
               
               
               Cow position:chr24:29561682-29561474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:90-277
               
               
               Cow position:chr24:40975325-40975514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:90-281
               
               
               Cow position:chr24:175598-175409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:94-275
               
               
               Cow position:chr24:43832426-43832608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:94-296
               
               
               Cow position:chr24:18614902-18615101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:94-309
               
               
               Cow position:chr24:39791442-39791656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 43

               
               
               Conread position:94-311
               
               
               Cow position:chr24:24662227-24662013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:94-311
               
               
               Cow position:chr24:30308654-30308442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:94-314
               
               
               Cow position:chr24:39523544-39523330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-316
               
               
               Cow position:chr24:35150425-35150638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr24:20807439-20807633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:95-300
               
               
               Cow position:chr24:28042876-28043080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:95-302
               
               
               Cow position:chr24:37823432-37823632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:96-302
               
               
               Cow position:chr24:230181-230390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:101-314
               
               
               Cow position:chr24:37975073-37974864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:104-284
               
               
               Cow position:chr24:4710333-4710156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:104-314
               
               
               Cow position:chr24:20364497-20364295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr24:13948034-13948244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:106-301
               
               
               Cow position:chr24:14457808-14457618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):173, 23

               
               
               Conread position:106-322
               
               
               Cow position:chr24:27284735-27284944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):168, 27

               
               
               Conread position:106-322
               
               
               Cow position:chr24:27349265-27349052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:111-276
               
               
               Cow position:chr24:18442641-18442478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:113-302
               
               
               Cow position:chr24:18474807-18474621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):166, 20

               
               
               Conread position:115-258
               
               
               Cow position:chr24:44145503-44145641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:123-297
               
               
               Cow position:chr24:20969735-20969563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:124-294
               
               
               Cow position:chr24:11007391-11007556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):155, 13

               
               
               Conread position:134-295
               
               
               Cow position:chr24:33244334-33244494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:134-314
               
               
               Cow position:chr24:41916192-41916377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):55, 156

               
               
               Conread position:136-314
               
               
               Cow position:chr24:25122287-25122457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:142-310
               
               
               Cow position:chr24:42981812-42981648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr24:41405837-41406023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:143-293
               
               
               Cow position:chr24:23694958-23694803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:143-296
               
               
               Cow position:chr24:29985037-29984884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):11, 142

               
               
               Conread position:143-298
               
               
               Cow position:chr24:5360667-5360819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:143-301
               
               
               Cow position:chr24:22133119-22133277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr24:21835010-21834855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 126

               
               
               Conread position:145-310
               
               
               Cow position:chr24:17375588-17375752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:148-298
               
               
               Cow position:chr24:40983084-40983236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):138, 49

               
               
               Conread position:152-277
               
               
               Cow position:chr24:42687805-42687927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:153-310
               
               
               Cow position:chr24:28689624-28689785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:156-321
               
               
               Cow position:chr24:12077551-12077726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-322
               
               
               Cow position:chr24:42726413-42726579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:166-282
               
               
               Cow position:chr24:24227709-24227590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 48

               
               
               Conread position:166-310
               
               
               Cow position:chr24:12657078-12656932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):110, 137

               
               
               Conread position:167-301
               
               
               Cow position:chr24:32891072-32890938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-322
               
               
               Cow position:chr24:37453532-37453374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 65

               
               
               Conread position:169-302
               
               
               Cow position:chr24:3412657-3412789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:169-322
               
               
               Cow position:chr24:39218579-39218423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:170-302
               
               
               Cow position:chr24:13610286-13610417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:171-276
               
               
               Cow position:chr24:18968824-18968929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-302
               
               
               Cow position:chr24:35030082-35029952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:178-322
               
               
               Cow position:chr24:18302697-18302834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:179-320
               
               
               Cow position:chr24:27553079-27553219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:181-298
               
               
               Cow position:chr24:27940635-27940520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 39

               
               
               Conread position:1-277
               
               
               Cow position:chr25:6961325-6961049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:1-314
               
               
               Cow position:chr25:1838061-1838385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:1-322
               
               
               Cow position:chr25:6474273-6473934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:6-282
               
               
               Cow position:chr25:34768898-34768625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):5, 114

               
               
               Conread position:6-299
               
               
               Cow position:chr25:20076324-20076624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:6-301
               
               
               Cow position:chr25:38957808-38958083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:6-322
               
               
               Cow position:chr25:8120614-8120923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 6

               
               
               Conread position:7-297
               
               
               Cow position:chr25:32277765-32277483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:7-302
               
               
               Cow position:chr25:15273523-15273802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:8-305
               
               
               Cow position:chr25:13272405-13272700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 5

               
               
               Conread position:9-202
               
               
               Cow position:chr25:2414651-2414844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:9-293
               
               
               Cow position:chr25:18564321-18564606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:9-295
               
               
               Cow position:chr25:14833830-14833539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 131

               
               
               Conread position:9-314
               
               
               Cow position:chr25:24669605-24669310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:10-277
               
               
               Cow position:chr25:26089983-26089709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:10-311
               
               
               Cow position:chr25:22531117-22531419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 137

               
               
               Conread position:11-270
               
               
               Cow position:chr25:16319296-16319043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:11-312
               
               
               Cow position:chr25:36761938-36762244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:19-297
               
               
               Cow position:chr25:17190898-17190623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:19-305
               
               
               Cow position:chr25:7581582-7581296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):105, 89

               
               
               Conread position:19-315
               
               
               Cow position:chr25:20523389-20523093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:19-322
               
               
               Cow position:chr25:22297176-22296871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 88

               
               
               Conread position:20-290
               
               
               Cow position:chr25:6687793-6688063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:20-320
               
               
               Cow position:chr25:28188105-28187798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):39, 125

               
               
               Conread position:27-271
               
               
               Cow position:chr25:40321439-40321190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:27-282
               
               
               Cow position:chr25:18721265-18721011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:27-305
               
               
               Cow position:chr25:9843026-9843308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:27-306
               
               
               Cow position:chr25:38569615-38569344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:27-316
               
               
               Cow position:chr25:36746592-36746312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:27-322
               
               
               Cow position:chr25:19849708-19850010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:28-312
               
               
               Cow position:chr25:23917693-23917979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):5, 124

               
               
               Conread position:29-293
               
               
               Cow position:chr25:11661964-11661696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:29-311
               
               
               Cow position:chr25:17144276-17144574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:29-314
               
               
               Cow position:chr25:33557129-33557408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:29-322
               
               
               Cow position:chr25:12609197-12609490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:29-322
               
               
               Cow position:chr25:30279351-30279052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:30-207
               
               
               Cow position:chr25:14266650-14266484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 54

               
               
               Conread position:31-301
               
               
               Cow position:chr25:7750310-7750580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:32-190
               
               
               Cow position:chr25:11054760-11054921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:32-254
               
               
               Cow position:chr25:17991728-17991506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:32-264
               
               
               Cow position:chr25:15377183-15377417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:32-267
               
               
               Cow position:chr25:11131436-11131678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-272
               
               
               Cow position:chr25:26523820-26524055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:32-275
               
               
               Cow position:chr25:9056044-9056280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:32-276
               
               
               Cow position:chr25:8961629-8961873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 170

               
               
               Conread position:32-276
               
               
               Cow position:chr25:14720610-14720847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:32-277
               
               
               Cow position:chr25:12778673-12778437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:32-277
               
               
               Cow position:chr25:17975512-17975274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:32-278
               
               
               Cow position:chr25:36036925-36036674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-282
               
               
               Cow position:chr25:30852612-30852876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:32-283
               
               
               Cow position:chr25:21191346-21191599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):62, 113

               
               
               Conread position:32-297
               
               
               Cow position:chr25:17704608-17704868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:32-297
               
               
               Cow position:chr25:22178776-22179040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:32-297
               
               
               Cow position:chr25:26700892-26701149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:32-297
               
               
               Cow position:chr25:36081732-36081998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:32-298
               
               
               Cow position:chr25:4547861-4547597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:32-298
               
               
               Cow position:chr25:7216686-7216949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:32-299
               
               
               Cow position:chr25:12117133-12116871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):247, 57

               
               
               Conread position:32-300
               
               
               Cow position:chr25:21893193-21893468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:32-301
               
               
               Cow position:chr25:23829264-23828999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):242, 35

               
               
               Conread position:32-301
               
               
               Cow position:chr25:41151105-41150835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:32-302
               
               
               Cow position:chr25:2624664-2624924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:32-302
               
               
               Cow position:chr25:4521979-4521711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:32-302
               
               
               Cow position:chr25:17658468-17658740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:32-302
               
               
               Cow position:chr25:19679201-19679482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:32-302
               
               
               Cow position:chr25:21193085-21192811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:32-303
               
               
               Cow position:chr25:35347763-35348041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):76, 91

               
               
               Conread position:32-305
               
               
               Cow position:chr25:14791609-14791885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:32-305
               
               
               Cow position:chr25:19129708-19129985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-307
               
               
               Cow position:chr25:26238726-26238995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):169, 76

               
               
               Conread position:32-308
               
               
               Cow position:chr25:61512-61785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:32-309
               
               
               Cow position:chr25:35826419-35826145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):193, 43

               
               
               Conread position:32-311
               
               
               Cow position:chr25:11830045-11829788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr25:34169809-34170084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr25:36017393-36017671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 170

               
               
               Conread position:32-314
               
               
               Cow position:chr25:15714740-15715014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:32-314
               
               
               Cow position:chr25:21668101-21668390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):76, 126

               
               
               Conread position:32-315
               
               
               Cow position:chr25:22315058-22315347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:32-318
               
               
               Cow position:chr25:21895031-21894735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-320
               
               
               Cow position:chr25:7380985-7380697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:32-320
               
               
               Cow position:chr25:11585377-11585669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:32-320
               
               
               Cow position:chr25:22751154-22750859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr25:788120-788399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr25:20007990-20008276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:32-322
               
               
               Cow position:chr25:20460982-20461258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:32-322
               
               
               Cow position:chr25:20785729-20785444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:32-322
               
               
               Cow position:chr25:21245752-21245455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:32-322
               
               
               Cow position:chr25:26679083-26679369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:33-277
               
               
               Cow position:chr25:4681093-4681330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:33-277
               
               
               Cow position:chr25:20023533-20023282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:33-282
               
               
               Cow position:chr25:38850629-38850384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 54

               
               
               Conread position:33-303
               
               
               Cow position:chr25:38981959-38982223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 74

               
               
               Conread position:33-311
               
               
               Cow position:chr25:19478548-19478815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):246, 39

               
               
               Conread position:33-314
               
               
               Cow position:chr25:33550365-33550653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:33-322
               
               
               Cow position:chr25:16921934-16921651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 56

               
               
               Conread position:33-322
               
               
               Cow position:chr25:23245153-23244862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:34-277
               
               
               Cow position:chr25:25051524-25051273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):46, 117

               
               
               Conread position:34-295
               
               
               Cow position:chr25:7641593-7641328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):60, 147

               
               
               Conread position:34-298
               
               
               Cow position:chr25:14196717-14196986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 115

               
               
               Conread position:34-305
               
               
               Cow position:chr25:3992651-3992911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):49, 65

               
               
               Conread position:34-311
               
               
               Cow position:chr25:15254474-15254210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:34-311
               
               
               Cow position:chr25:18905742-18906023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:34-322
               
               
               Cow position:chr25:7007772-7008062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:34-322
               
               
               Cow position:chr25:30618923-30619212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:34-322
               
               
               Cow position:chr25:38135604-38135895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:35-300
               
               
               Cow position:chr25:22730691-22730955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:35-311
               
               
               Cow position:chr25:12319489-12319217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 182

               
               
               Conread position:35-312
               
               
               Cow position:chr25:9990234-9989976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:35-322
               
               
               Cow position:chr25:10504479-10504193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:35-322
               
               
               Cow position:chr25:13443551-13443265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:36-292
               
               
               Cow position:chr25:27531413-27531152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 125

               
               
               Conread position:36-298
               
               
               Cow position:chr25:34979008-34978738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):68, 231

               
               
               Conread position:40-296
               
               
               Cow position:chr25:4245553-4245791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 89

               
               
               Conread position:41-282
               
               
               Cow position:chr25:12510145-12509902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:41-322
               
               
               Cow position:chr25:19364194-19363918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:42-241
               
               
               Cow position:chr25:24051828-24052034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:42-277
               
               
               Cow position:chr25:11436941-11436703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:44-293
               
               
               Cow position:chr25:14157489-14157745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:44-314
               
               
               Cow position:chr25:24572936-24573204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:44-322
               
               
               Cow position:chr25:6683195-6682908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:44-322
               
               
               Cow position:chr25:24203125-24202867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:50-315
               
               
               Cow position:chr25:4488793-4489048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:51-281
               
               
               Cow position:chr25:33457604-33457840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:60-302
               
               
               Cow position:chr25:11433070-11432816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 237

               
               
               Conread position:60-322
               
               
               Cow position:chr25:31065087-31065337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):225, 15

               
               
               Conread position:64-218
               
               
               Cow position:chr25:7440919-7441074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:64-276
               
               
               Cow position:chr25:6226934-6227138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:64-322
               
               
               Cow position:chr25:36872249-36872505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:65-285
               
               
               Cow position:chr25:4947857-4948076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):209, 56

               
               
               Conread position:66-276
               
               
               Cow position:chr25:14809177-14809376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:67-310
               
               
               Cow position:chr25:13566852-13567106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 78

               
               
               Conread position:79-311
               
               
               Cow position:chr25:23745165-23745397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:85-322
               
               
               Cow position:chr25:1824181-1823949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:89-293
               
               
               Cow position:chr25:23817922-23817721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:91-302
               
               
               Cow position:chr25:1840242-1840451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:93-308
               
               
               Cow position:chr25:36120427-36120633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:94-277
               
               
               Cow position:chr25:11823507-11823326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-292
               
               
               Cow position:chr25:14118018-14118205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):180, 42

               
               
               Conread position:94-302
               
               
               Cow position:chr25:36021248-36021448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:94-311
               
               
               Cow position:chr25:12252887-12252671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 43

               
               
               Conread position:94-311
               
               
               Cow position:chr25:26051826-26052041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:94-317
               
               
               Cow position:chr25:23504972-23505194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 191

               
               
               Conread position:94-322
               
               
               Cow position:chr25:5920009-5920231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):179, 32

               
               
               Conread position:94-322
               
               
               Cow position:chr25:7799478-7799696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):185, 37

               
               
               Conread position:94-322
               
               
               Cow position:chr25:12305201-12305421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:95-282
               
               
               Cow position:chr25:7379224-7379038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:95-322
               
               
               Cow position:chr25:11276478-11276695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):204, 40

               
               
               Conread position:96-301
               
               
               Cow position:chr25:37332118-37331912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:96-314
               
               
               Cow position:chr25:13621432-13621220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:100-315
               
               
               Cow position:chr25:27595498-27595706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:101-319
               
               
               Cow position:chr25:36716852-36717055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:101-322
               
               
               Cow position:chr25:26306274-26306061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:102-290
               
               
               Cow position:chr25:6134159-6133974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-285
               
               
               Cow position:chr25:13767904-13768081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:104-311
               
               
               Cow position:chr25:36019733-36019532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr25:36074065-36073857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:106-322
               
               
               Cow position:chr25:12806981-12807185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:107-312
               
               
               Cow position:chr25:35762528-35762724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):127, 26

               
               
               Conread position:118-282
               
               
               Cow position:chr25:18542000-18541836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):146, 19

               
               
               Conread position:118-306
               
               
               Cow position:chr25:40931223-40931406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:126-322
               
               
               Cow position:chr25:22348508-22348316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:128-313
               
               
               Cow position:chr25:18288810-18288629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:130-302
               
               
               Cow position:chr25:13823764-13823589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:130-302
               
               
               Cow position:chr25:35109309-35109140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:130-316
               
               
               Cow position:chr25:18929235-18929049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:133-314
               
               
               Cow position:chr25:35339231-35339048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:134-297
               
               
               Cow position:chr25:18810304-18810467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):145, 153

               
               
               Conread position:134-320
               
               
               Cow position:chr25:19421785-19421973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 159

               
               
               Conread position:134-321
               
               
               Cow position:chr25:19584325-19584510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:134-321
               
               
               Cow position:chr25:28597650-28597460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:136-297
               
               
               Cow position:chr25:9107561-9107399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:138-300
               
               
               Cow position:chr25:13222865-13223026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:143-269
               
               
               Cow position:chr25:37606331-37606457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-302
               
               
               Cow position:chr25:22298608-22298762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):130, 104

               
               
               Conread position:145-265
               
               
               Cow position:chr25:14211602-14211721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:145-296
               
               
               Cow position:chr25:11760480-11760331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:145-300
               
               
               Cow position:chr25:5637413-5637258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-301
               
               
               Cow position:chr25:36045657-36045805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr25:28668078-28667917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:145-315
               
               
               Cow position:chr25:16372523-16372695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr25:23473412-23473583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):136, 78

               
               
               Conread position:146-310
               
               
               Cow position:chr25:30625110-30624946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-314
               
               
               Cow position:chr25:13826410-13826573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:148-308
               
               
               Cow position:chr25:15463562-15463722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-322
               
               
               Cow position:chr25:7673271-7673448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 160

               
               
               Conread position:153-314
               
               
               Cow position:chr25:36873353-36873195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:154-311
               
               
               Cow position:chr25:15218117-15218270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:154-314
               
               
               Cow position:chr25:26072576-26072421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:156-322
               
               
               Cow position:chr25:3744762-3744595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:160-301
               
               
               Cow position:chr25:20202900-20203039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:161-296
               
               
               Cow position:chr25:30064925-30064789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:162-320
               
               
               Cow position:chr25:12195238-12195080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:163-305
               
               
               Cow position:chr25:36873066-36872924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-287
               
               
               Cow position:chr25:23998931-23998810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-295
               
               
               Cow position:chr25:33267953-33268079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:166-302
               
               
               Cow position:chr25:8347645-8347783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:167-294
               
               
               Cow position:chr25:34967515-34967388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-314
               
               
               Cow position:chr25:9574136-9573993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 28

               
               
               Conread position:168-295
               
               
               Cow position:chr25:31657282-31657155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:171-311
               
               
               Cow position:chr25:8222907-8223043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:173-302
               
               
               Cow position:chr25:14264956-14265085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 43

               
               
               Conread position:178-305
               
               
               Cow position:chr25:24115311-24115184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:179-322
               
               
               Cow position:chr25:15573394-15573531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:179-322
               
               
               Cow position:chr25:23323496-23323639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:184-322
               
               
               Cow position:chr25:7684887-7684757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:185-310
               
               
               Cow position:chr25:15695275-15695400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:190-302
               
               
               Cow position:chr25:18934617-18934506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:201-299
               
               
               Cow position:chr25:6781890-6781988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:203-302
               
               
               Cow position:chr25:26174630-26174729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:203-322
               
               
               Cow position:chr25:29335230-29335351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:1-286
               
               
               Cow position:chr26:798453-798164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:1-287
               
               
               Cow position:chr26:33567202-33566911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:1-311
               
               
               Cow position:chr26:2739612-2739298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:1-311
               
               
               Cow position:chr26:19774459-19774143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:2-322
               
               
               Cow position:chr26:14175127-14175457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:4-302
               
               
               Cow position:chr26:21242946-21243243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:6-294
               
               
               Cow position:chr26:9491779-9492061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 6

               
               
               Conread position:6-298
               
               
               Cow position:chr26:23315623-23315918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-311
               
               
               Cow position:chr26:22152076-22152387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:6-322
               
               
               Cow position:chr26:19445975-19446298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 189

               
               
               Conread position:9-311
               
               
               Cow position:chr26:26294344-26294033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:10-301
               
               
               Cow position:chr26:33736698-33736406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:10-318
               
               
               Cow position:chr26:8642796-8643103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:11-296
               
               
               Cow position:chr26:17057537-17057821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:11-298
               
               
               Cow position:chr26:25526101-25526395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-313
               
               
               Cow position:chr26:32601206-32601507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr26:587021-586712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr26:31605263-31605576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:18-296
               
               
               Cow position:chr26:18825420-18825141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:19-314
               
               
               Cow position:chr26:19459541-19459852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:27-322
               
               
               Cow position:chr26:34060202-34060496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 117

               
               
               Conread position:28-287
               
               
               Cow position:chr26:6475560-6475295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):80, 123

               
               
               Conread position:29-258
               
               
               Cow position:chr26:6006172-6005953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:29-303
               
               
               Cow position:chr26:7315231-7314959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 111

               
               
               Conread position:29-314
               
               
               Cow position:chr26:15211676-15211965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:30-225
               
               
               Cow position:chr26:10747753-10747563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 5

               
               
               Conread position:30-277
               
               
               Cow position:chr26:26466849-26466609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:30-298
               
               
               Cow position:chr26:8352834-8353113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:30-312
               
               
               Cow position:chr26:8700174-8699896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:32-176
               
               
               Cow position:chr26:7525594-7525451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:32-191
               
               
               Cow position:chr26:7155850-7156008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:32-194
               
               
               Cow position:chr26:31572126-31572286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:32-284
               
               
               Cow position:chr26:26950571-26950324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:32-286
               
               
               Cow position:chr26:34108637-34108890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-292
               
               
               Cow position:chr26:12238149-12237891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:32-293
               
               
               Cow position:chr26:12145245-12144979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:32-294
               
               
               Cow position:chr26:35704264-35704524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:32-295
               
               
               Cow position:chr26:35448935-35449204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:32-296
               
               
               Cow position:chr26:13801989-13802253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:32-297
               
               
               Cow position:chr26:22249604-22249340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:32-297
               
               
               Cow position:chr26:22354287-22354557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:32-299
               
               
               Cow position:chr26:14308966-14309222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 76

               
               
               Conread position:32-301
               
               
               Cow position:chr26:9535392-9535663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):54, 49

               
               
               Conread position:32-301
               
               
               Cow position:chr26:19110059-19110331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:32-301
               
               
               Cow position:chr26:20769729-20770000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-301
               
               
               Cow position:chr26:28251020-28251302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:32-302
               
               
               Cow position:chr26:17148578-17148848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:32-302
               
               
               Cow position:chr26:20291808-20291544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr26:31633600-31633880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:32-303
               
               
               Cow position:chr26:15200644-15200367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 121

               
               
               Conread position:32-306
               
               
               Cow position:chr26:25393905-25394191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-308
               
               
               Cow position:chr26:13021271-13020993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-308
               
               
               Cow position:chr26:23583072-23582792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:32-308
               
               
               Cow position:chr26:32652852-32652583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):266, 101

               
               
               Conread position:32-309
               
               
               Cow position:chr26:12964822-12964542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr26:11263515-11263796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:32-314
               
               
               Cow position:chr26:33112508-33112225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:32-320
               
               
               Cow position:chr26:34027166-34026875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:32-322
               
               
               Cow position:chr26:3706678-3706963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:32-322
               
               
               Cow position:chr26:8307637-8307366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:32-322
               
               
               Cow position:chr26:27491627-27491335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:33-276
               
               
               Cow position:chr26:34847617-34847866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:33-277
               
               
               Cow position:chr26:26888255-26888012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:33-284
               
               
               Cow position:chr26:21637158-21636908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:33-292
               
               
               Cow position:chr26:20551018-20551282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:33-314
               
               
               Cow position:chr26:32897996-32897719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 108

               
               
               Conread position:34-287
               
               
               Cow position:chr26:32058532-32058779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 114

               
               
               Conread position:34-301
               
               
               Cow position:chr26:16783700-16783974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):69, 105

               
               
               Conread position:34-311
               
               
               Cow position:chr26:7212689-7212428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:34-314
               
               
               Cow position:chr26:33202179-33201910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 66

               
               
               Conread position:34-314
               
               
               Cow position:chr26:33253445-33253156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:35-294
               
               
               Cow position:chr26:14905934-14905668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:35-301
               
               
               Cow position:chr26:22892565-22892298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:35-318
               
               
               Cow position:chr26:647843-647566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:35-322
               
               
               Cow position:chr26:8811007-8811291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 98

               
               
               Conread position:36-287
               
               
               Cow position:chr26:6029896-6029624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:36-322
               
               
               Cow position:chr26:23097300-23097032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:37-302
               
               
               Cow position:chr26:12893542-12893281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:42-249
               
               
               Cow position:chr26:18651750-18651541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:42-322
               
               
               Cow position:chr26:32834690-32834413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:44-314
               
               
               Cow position:chr26:32670605-32670338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:44-322
               
               
               Cow position:chr26:6714407-6714138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:46-302
               
               
               Cow position:chr26:31137561-31137318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:50-282
               
               
               Cow position:chr26:32565908-32566139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:51-302
               
               
               Cow position:chr26:34724982-34724726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):57, 151

               
               
               Conread position:51-322
               
               
               Cow position:chr26:24240569-24240845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 163

               
               
               Conread position:52-276
               
               
               Cow position:chr26:32955738-32955508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 82

               
               
               Conread position:57-310
               
               
               Cow position:chr26:13818323-13818581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:58-278
               
               
               Cow position:chr26:14481648-14481430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:61-306
               
               
               Cow position:chr26:7687337-7687094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):47, 75

               
               
               Conread position:61-320
               
               
               Cow position:chr26:6794054-6794310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:61-322
               
               
               Cow position:chr26:5836912-5836657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:65-322
               
               
               Cow position:chr26:10965682-10965425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:67-308
               
               
               Cow position:chr26:678070-677826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:82-296
               
               
               Cow position:chr26:26537594-26537377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:89-302
               
               
               Cow position:chr26:9604502-9604710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 49

               
               
               Conread position:93-256
               
               
               Cow position:chr26:22603096-22602936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:93-322
               
               
               Cow position:chr26:4807505-4807718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:93-322
               
               
               Cow position:chr26:33392335-33392564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:94-277
               
               
               Cow position:chr26:6514786-6514966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:94-295
               
               
               Cow position:chr26:6451123-6451320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:94-305
               
               
               Cow position:chr26:23924791-23925001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):39, 49

               
               
               Conread position:94-311
               
               
               Cow position:chr26:6864960-6865178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:95-275
               
               
               Cow position:chr26:31556990-31556811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:95-314
               
               
               Cow position:chr26:4854484-4854704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 145

               
               
               Conread position:96-298
               
               
               Cow position:chr26:20825163-20824974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):138, 57

               
               
               Conread position:99-322
               
               
               Cow position:chr26:18529730-18529948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:101-298
               
               
               Cow position:chr26:19591433-19591627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:101-322
               
               
               Cow position:chr26:24453955-24453739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):176, 40

               
               
               Conread position:104-302
               
               
               Cow position:chr26:22033436-22033629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):187, 29

               
               
               Conread position:104-311
               
               
               Cow position:chr26:32863714-32863512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):177, 29

               
               
               Conread position:104-314
               
               
               Cow position:chr26:28423240-28423446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:107-302
               
               
               Cow position:chr26:5168349-5168541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:113-282
               
               
               Cow position:chr26:18741097-18740929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:113-314
               
               
               Cow position:chr26:19636253-19636454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):114, 20

               
               
               Conread position:117-314
               
               
               Cow position:chr26:34560203-34560011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:118-322
               
               
               Cow position:chr26:7314586-7314789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:125-311
               
               
               Cow position:chr26:34154106-34154291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:130-301
               
               
               Cow position:chr26:30254655-30254487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:130-303
               
               
               Cow position:chr26:32571271-32571442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):148, 11

               
               
               Conread position:130-311
               
               
               Cow position:chr26:16594524-16594345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:133-297
               
               
               Cow position:chr26:6337772-6337930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:134-291
               
               
               Cow position:chr26:10732569-10732410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 124

               
               
               Conread position:137-297
               
               
               Cow position:chr26:5666030-5666192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 143

               
               
               Conread position:137-322
               
               
               Cow position:chr26:12940383-12940569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):142, 163

               
               
               Conread position:143-320
               
               
               Cow position:chr26:16435667-16435491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:144-301
               
               
               Cow position:chr26:13292509-13292668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:145-278
               
               
               Cow position:chr26:17651951-17652084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):92, 85

               
               
               Conread position:145-311
               
               
               Cow position:chr26:107016-107183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):104, 133

               
               
               Conread position:145-314
               
               
               Cow position:chr26:11875229-11875061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:146-298
               
               
               Cow position:chr26:34611189-34611038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:146-308
               
               
               Cow position:chr26:33241881-33242043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:154-285
               
               
               Cow position:chr26:22429831-22429703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:154-322
               
               
               Cow position:chr26:22901261-22901093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):141, 42

               
               
               Conread position:157-311
               
               
               Cow position:chr26:25197313-25197162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:163-282
               
               
               Cow position:chr26:32361983-32362103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:163-293
               
               
               Cow position:chr26:32517447-32517318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:167-302
               
               
               Cow position:chr26:32353707-32353572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:168-314
               
               
               Cow position:chr26:13863020-13862878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:174-301
               
               
               Cow position:chr26:33038203-33038076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-322
               
               
               Cow position:chr26:15132657-15132801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 95

               
               
               Conread position:176-306
               
               
               Cow position:chr26:28410005-28410136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:178-301
               
               
               Cow position:chr26:7525179-7525059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:179-293
               
               
               Cow position:chr26:25407417-25407531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:179-302
               
               
               Cow position:chr26:16585460-16585584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:179-303
               
               
               Cow position:chr26:6487766-6487642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-302
               
               
               Cow position:chr26:8341522-8341643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:180-305
               
               
               Cow position:chr26:10700876-10700752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:180-310
               
               
               Cow position:chr26:28759794-28759667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:188-322
               
               
               Cow position:chr26:13705743-13705608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:202-314
               
               
               Cow position:chr26:29897235-29897347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-276
               
               
               Cow position:chr27:21213901-21213639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:1-286
               
               
               Cow position:chr27:18593399-18593114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:2-302
               
               
               Cow position:chr27:20828580-20828883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:2-310
               
               
               Cow position:chr27:7731116-7731438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:6-282
               
               
               Cow position:chr27:15408916-15409191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-301
               
               
               Cow position:chr27:21668997-21669288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:6-322
               
               
               Cow position:chr27:30765163-30764845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:7-294
               
               
               Cow position:chr27:6541757-6541465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:9-297
               
               
               Cow position:chr27:20641215-20641504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:9-302
               
               
               Cow position:chr27:1768505-1768798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:10-316
               
               
               Cow position:chr27:21393381-21393696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:10-322
               
               
               Cow position:chr27:2592670-2592349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-322
               
               
               Cow position:chr27:11435201-11435515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:11-265
               
               
               Cow position:chr27:4805790-4806039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:11-275
               
               
               Cow position:chr27:16284589-16284328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:11-275
               
               
               Cow position:chr27:20553839-20553584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:11-296
               
               
               Cow position:chr27:20067858-20068142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 133

               
               
               Conread position:11-301
               
               
               Cow position:chr27:27632491-27632772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:11-311
               
               
               Cow position:chr27:30988916-30988614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:11-318
               
               
               Cow position:chr27:27270420-27270732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr27:10979982-10979672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 121

               
               
               Conread position:11-322
               
               
               Cow position:chr27:19718042-19717710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 145

               
               
               Conread position:15-276
               
               
               Cow position:chr27:22386986-22386726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 124

               
               
               Conread position:19-277
               
               
               Cow position:chr27:435348-435075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:19-296
               
               
               Cow position:chr27:16705359-16705082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:19-297
               
               
               Cow position:chr27:20283755-20283468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:25-275
               
               
               Cow position:chr27:20497320-20497058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 123

               
               
               Conread position:26-298
               
               
               Cow position:chr27:12596870-12596606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:27-276
               
               
               Cow position:chr27:20629148-20628920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:27-305
               
               
               Cow position:chr27:28518395-28518116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):6, 111

               
               
               Conread position:27-309
               
               
               Cow position:chr27:22454673-22454958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:27-311
               
               
               Cow position:chr27:16589611-16589886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:27-322
               
               
               Cow position:chr27:15378376-15378672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:27-322
               
               
               Cow position:chr27:20354688-20354412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:27-322
               
               
               Cow position:chr27:26506827-26506555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-322
               
               
               Cow position:chr27:30406934-30407233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:29-298
               
               
               Cow position:chr27:24371337-24371072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:30-322
               
               
               Cow position:chr27:4385962-4386256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 6

               
               
               Conread position:32-228
               
               
               Cow position:chr27:20789278-20789480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:32-240
               
               
               Cow position:chr27:3983-3784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:32-256
               
               
               Cow position:chr27:4858547-4858768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 106

               
               
               Conread position:32-258
               
               
               Cow position:chr27:16625996-16625769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:32-263
               
               
               Cow position:chr27:30551096-30550854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:32-271
               
               
               Cow position:chr27:715602-715357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:32-272
               
               
               Cow position:chr27:28496279-28496515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:32-276
               
               
               Cow position:chr27:19647840-19648091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 116

               
               
               Conread position:32-276
               
               
               Cow position:chr27:26151120-26150869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:32-277
               
               
               Cow position:chr27:1123130-1122882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:32-282
               
               
               Cow position:chr27:1498416-1498160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 112

               
               
               Conread position:32-283
               
               
               Cow position:chr27:4812781-4813038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):68, 103

               
               
               Conread position:32-284
               
               
               Cow position:chr27:16478242-16478493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:32-284
               
               
               Cow position:chr27:23472351-23472101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:32-287
               
               
               Cow position:chr27:20549609-20549871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:32-287
               
               
               Cow position:chr27:26413154-26413414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:32-287
               
               
               Cow position:chr27:29493813-29494060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):247, 75

               
               
               Conread position:32-290
               
               
               Cow position:chr27:12246756-12246490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 178

               
               
               Conread position:32-293
               
               
               Cow position:chr27:17331598-17331337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:32-294
               
               
               Cow position:chr27:299288-299547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):74, 41

               
               
               Conread position:32-295
               
               
               Cow position:chr27:27856430-27856165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:32-296
               
               
               Cow position:chr27:4673118-4672843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:32-297
               
               
               Cow position:chr27:4819606-4819885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:32-297
               
               
               Cow position:chr27:30890386-30890124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-301
               
               
               Cow position:chr27:19388113-19387844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-301
               
               
               Cow position:chr27:26984438-26984175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:32-301
               
               
               Cow position:chr27:27460476-27460745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):76, 150

               
               
               Conread position:32-302
               
               
               Cow position:chr27:1636844-1637110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr27:22418669-22418940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:32-302
               
               
               Cow position:chr27:24477512-24477242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-302
               
               
               Cow position:chr27:26226191-26226464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:32-303
               
               
               Cow position:chr27:26999320-26999597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:32-305
               
               
               Cow position:chr27:8168330-8168610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:32-308
               
               
               Cow position:chr27:27640896-27641191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 214

               
               
               Conread position:32-311
               
               
               Cow position:chr27:6074020-6073747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 76

               
               
               Conread position:32-311
               
               
               Cow position:chr27:15643271-15642991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:32-311
               
               
               Cow position:chr27:20795886-20795609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:32-311
               
               
               Cow position:chr27:27136420-27136704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr27:30359503-30359223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-314
               
               
               Cow position:chr27:7412478-7412206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:32-314
               
               
               Cow position:chr27:17397351-17397639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:32-314
               
               
               Cow position:chr27:26865021-26865296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:32-319
               
               
               Cow position:chr27:30354244-30354534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr27:815465-815146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr27:7212618-7212918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:32-322
               
               
               Cow position:chr27:7649489-7649780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:32-322
               
               
               Cow position:chr27:15668671-15668962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-322
               
               
               Cow position:chr27:22220649-22220362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:32-322
               
               
               Cow position:chr27:22603270-22602989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:32-322
               
               
               Cow position:chr27:23891040-23890745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr27:26959519-26959802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr27:27245254-27245552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:33-271
               
               
               Cow position:chr27:20656536-20656763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:33-277
               
               
               Cow position:chr27:24321284-24321040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:33-281
               
               
               Cow position:chr27:10992452-10992203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:33-282
               
               
               Cow position:chr27:20037028-20037269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:33-284
               
               
               Cow position:chr27:29504549-29504806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:33-294
               
               
               Cow position:chr27:22547310-22547560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 105

               
               
               Conread position:33-298
               
               
               Cow position:chr27:31230995-31231251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:33-302
               
               
               Cow position:chr27:19685613-19685888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:33-306
               
               
               Cow position:chr27:2957499-2957233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:33-310
               
               
               Cow position:chr27:4835513-4835793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):235, 112

               
               
               Conread position:33-314
               
               
               Cow position:chr27:22171398-22171114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:33-322
               
               
               Cow position:chr27:27388926-27389215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:34-298
               
               
               Cow position:chr27:31148858-31148589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:34-302
               
               
               Cow position:chr27:427066-426794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:34-302
               
               
               Cow position:chr27:28206891-28206628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:34-304
               
               
               Cow position:chr27:22569869-22569607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):74, 99

               
               
               Conread position:34-305
               
               
               Cow position:chr27:26239122-26238847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):70, 232

               
               
               Conread position:34-308
               
               
               Cow position:chr27:14670287-14670564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:34-320
               
               
               Cow position:chr27:23594413-23594133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:34-322
               
               
               Cow position:chr27:26433718-26434001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:35-272
               
               
               Cow position:chr27:24014644-24014884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:35-286
               
               
               Cow position:chr27:8405740-8405980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:35-288
               
               
               Cow position:chr27:8353569-8353317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):73, 55

               
               
               Conread position:35-297
               
               
               Cow position:chr27:22035281-22035548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:35-302
               
               
               Cow position:chr27:15454307-15454036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):70, 181

               
               
               Conread position:35-310
               
               
               Cow position:chr27:25277237-25276961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:35-316
               
               
               Cow position:chr27:6550553-6550273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:35-320
               
               
               Cow position:chr27:16103903-16103625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:35-320
               
               
               Cow position:chr27:22559725-22560014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:35-322
               
               
               Cow position:chr27:7935059-7935346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 255

               
               
               Conread position:35-322
               
               
               Cow position:chr27:18558456-18558170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:35-322
               
               
               Cow position:chr27:30868646-30868939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:36-277
               
               
               Cow position:chr27:20092743-20092984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:36-297
               
               
               Cow position:chr27:29431552-29431299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:36-306
               
               
               Cow position:chr27:23483320-23483047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:36-308
               
               
               Cow position:chr27:20757957-20758212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):243, 64

               
               
               Conread position:37-275
               
               
               Cow position:chr27:29312579-29312822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:37-302
               
               
               Cow position:chr27:26643772-26643515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:37-322
               
               
               Cow position:chr27:23511084-23510787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:39-295
               
               
               Cow position:chr27:23917944-23918208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:40-304
               
               
               Cow position:chr27:29380950-29380678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:43-322
               
               
               Cow position:chr27:16780956-16780668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:44-322
               
               
               Cow position:chr27:27694684-27694963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:45-322
               
               
               Cow position:chr27:10582451-10582180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:46-315
               
               
               Cow position:chr27:31219337-31219077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:47-281
               
               
               Cow position:chr27:26407080-26407313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:50-284
               
               
               Cow position:chr27:25720863-25721107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:50-312
               
               
               Cow position:chr27:24738710-24738981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):58, 108

               
               
               Conread position:53-277
               
               
               Cow position:chr27:24440150-24440372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:55-286
               
               
               Cow position:chr27:4944442-4944673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 73

               
               
               Conread position:64-322
               
               
               Cow position:chr27:590700-590957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:65-301
               
               
               Cow position:chr27:23452525-23452286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:68-312
               
               
               Cow position:chr27:31017771-31018012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:74-322
               
               
               Cow position:chr27:24240403-24240163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:79-302
               
               
               Cow position:chr27:12459327-12459114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:85-308
               
               
               Cow position:chr27:18767024-18767240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:86-320
               
               
               Cow position:chr27:5553510-5553281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:89-322
               
               
               Cow position:chr27:25152119-25151901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:94-246
               
               
               Cow position:chr27:21130338-21130187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:94-282
               
               
               Cow position:chr27:22225566-22225747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-298
               
               
               Cow position:chr27:1290822-1291021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:94-306
               
               
               Cow position:chr27:1353616-1353404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:94-309
               
               
               Cow position:chr27:4720083-4720294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):210, 53

               
               
               Conread position:94-310
               
               
               Cow position:chr27:18922801-18923015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:94-314
               
               
               Cow position:chr27:23485242-23485026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:94-316
               
               
               Cow position:chr27:26111880-26112100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 196

               
               
               Conread position:94-322
               
               
               Cow position:chr27:212993-212763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:94-322
               
               
               Cow position:chr27:6925118-6924894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:94-322
               
               
               Cow position:chr27:20517688-20517465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:95-301
               
               
               Cow position:chr27:22423538-22423343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:95-322
               
               
               Cow position:chr27:23107873-23108090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:96-298
               
               
               Cow position:chr27:23560003-23560205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):178, 37

               
               
               Conread position:101-282
               
               
               Cow position:chr27:31378240-31378063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:105-272
               
               
               Cow position:chr27:22421831-22421996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:105-306
               
               
               Cow position:chr27:24305456-24305261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):126, 104

               
               
               Conread position:105-307
               
               
               Cow position:chr27:237288-237091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:105-315
               
               
               Cow position:chr27:28242992-28242787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):119, 36

               
               
               Conread position:106-301
               
               
               Cow position:chr27:30846676-30846483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):170, 31

               
               
               Conread position:106-306
               
               
               Cow position:chr27:17918298-17918490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-309
               
               
               Cow position:chr27:4156019-4155818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:106-311
               
               
               Cow position:chr27:15215250-15215041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):153, 68

               
               
               Conread position:106-312
               
               
               Cow position:chr27:29593611-29593813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:106-322
               
               
               Cow position:chr27:16088826-16088603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:106-322
               
               
               Cow position:chr27:19660952-19660740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:107-282
               
               
               Cow position:chr27:26915409-26915586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:108-314
               
               
               Cow position:chr27:19509030-19508828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:109-310
               
               
               Cow position:chr27:6302448-6302650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:109-322
               
               
               Cow position:chr27:19543904-19544116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):192, 44

               
               
               Conread position:113-293
               
               
               Cow position:chr27:28478592-28478414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:113-301
               
               
               Cow position:chr27:31210558-31210375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:113-302
               
               
               Cow position:chr27:20812916-20812732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:115-306
               
               
               Cow position:chr27:29597741-29597923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:117-311
               
               
               Cow position:chr27:20486065-20485871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:131-310
               
               
               Cow position:chr27:22348486-22348307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:134-302
               
               
               Cow position:chr27:26617399-26617237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:134-311
               
               
               Cow position:chr27:22179776-22179948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:138-297
               
               
               Cow position:chr27:27055275-27055119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:142-320
               
               
               Cow position:chr27:15002993-15003165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr27:7343443-7343617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):100, 124

               
               
               Conread position:145-301
               
               
               Cow position:chr27:788815-788970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:145-301
               
               
               Cow position:chr27:6319901-6319746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 93

               
               
               Conread position:145-311
               
               
               Cow position:chr27:30489428-30489594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-322
               
               
               Cow position:chr27:12710230-12710052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:148-311
               
               
               Cow position:chr27:6674258-6674097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:150-314
               
               
               Cow position:chr27:24223929-24223764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):57, 67

               
               
               Conread position:152-314
               
               
               Cow position:chr27:6106675-6106516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 54

               
               
               Conread position:154-298
               
               
               Cow position:chr27:13204432-13204289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:154-311
               
               
               Cow position:chr27:29319384-29319228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:161-322
               
               
               Cow position:chr27:26323414-26323254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:163-314
               
               
               Cow position:chr27:18435169-18435318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr27:19452966-19452811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:166-295
               
               
               Cow position:chr27:20770567-20770696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-311
               
               
               Cow position:chr27:11466505-11466647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:167-322
               
               
               Cow position:chr27:24303907-24303752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:169-314
               
               
               Cow position:chr27:19576365-19576510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:171-318
               
               
               Cow position:chr27:20543676-20543531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr27:10581483-10581346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:174-302
               
               
               Cow position:chr27:11134039-11133912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:174-320
               
               
               Cow position:chr27:15859344-15859483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:174-322
               
               
               Cow position:chr27:22268178-22268032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):128, 22

               
               
               Conread position:178-295
               
               
               Cow position:chr27:2949378-2949495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:178-303
               
               
               Cow position:chr27:23504012-23504137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-298
               
               
               Cow position:chr27:4398544-4398663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:181-306
               
               
               Cow position:chr27:30884974-30884849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:183-284
               
               
               Cow position:chr27:21025630-21025527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:184-294
               
               
               Cow position:chr27:1067511-1067401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:199-302
               
               
               Cow position:chr27:23477874-23477772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:199-320
               
               
               Cow position:chr27:29183288-29183411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:200-322
               
               
               Cow position:chr27:31183503-31183383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1-274
               
               
               Cow position:chr28:7228553-7228282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-293
               
               
               Cow position:chr28:3078848-3078555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):98, 22

               
               
               Conread position:1-311
               
               
               Cow position:chr28:2752667-2752349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-314
               
               
               Cow position:chr28:20124619-20124930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:4-247
               
               
               Cow position:chr28:10529651-10529409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:4-297
               
               
               Cow position:chr28:34133695-34133991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):7, 140

               
               
               Conread position:6-297
               
               
               Cow position:chr28:11426701-11426410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:6-305
               
               
               Cow position:chr28:11527426-11527120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:6-321
               
               
               Cow position:chr28:11829096-11828811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:7-308
               
               
               Cow position:chr28:12619408-12619717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:8-302
               
               
               Cow position:chr28:7268096-7267812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):125, 5

               
               
               Conread position:8-314
               
               
               Cow position:chr28:21844799-21845103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 5

               
               
               Conread position:8-322
               
               
               Cow position:chr28:4158798-4159113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:9-322
               
               
               Cow position:chr28:11422971-11422666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):96, 51

               
               
               Conread position:10-251
               
               
               Cow position:chr28:21672645-21672878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:10-276
               
               
               Cow position:chr28:1099803-1099554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-301
               
               
               Cow position:chr28:25056811-25057097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-302
               
               
               Cow position:chr28:5817685-5817977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:11-322
               
               
               Cow position:chr28:4282648-4282340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:11-322
               
               
               Cow position:chr28:4308068-4307744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:11-322
               
               
               Cow position:chr28:9099779-9100078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:18-297
               
               
               Cow position:chr28:23410481-23410192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:19-311
               
               
               Cow position:chr28:26220106-26220401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:19-315
               
               
               Cow position:chr28:22500639-22500355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:20-207
               
               
               Cow position:chr28:5904583-5904773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:21-300
               
               
               Cow position:chr28:33884260-33884535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:26-298
               
               
               Cow position:chr28:4070826-4071098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 218

               
               
               Conread position:26-322
               
               
               Cow position:chr28:11687172-11686869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 177

               
               
               Conread position:27-286
               
               
               Cow position:chr28:22571807-22571548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):69, 121

               
               
               Conread position:27-294
               
               
               Cow position:chr28:19564365-19564102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 10

               
               
               Conread position:27-305
               
               
               Cow position:chr28:34561208-34561481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:27-322
               
               
               Cow position:chr28:26743476-26743780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:28-302
               
               
               Cow position:chr28:4090189-4089922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:28-314
               
               
               Cow position:chr28:7009116-7008832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 119

               
               
               Conread position:29-271
               
               
               Cow position:chr28:26922505-26922263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:29-276
               
               
               Cow position:chr28:16085183-16085435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:29-298
               
               
               Cow position:chr28:16346667-16346399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:29-302
               
               
               Cow position:chr28:4809657-4809914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 61

               
               
               Conread position:29-310
               
               
               Cow position:chr28:8022249-8021956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:29-322
               
               
               Cow position:chr28:31841476-31841198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:30-276
               
               
               Cow position:chr28:29416852-29416607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):78, 51

               
               
               Conread position:30-292
               
               
               Cow position:chr28:5074648-5074388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:30-322
               
               
               Cow position:chr28:5144661-5144365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:32-181
               
               
               Cow position:chr28:657586-657436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:32-227
               
               
               Cow position:chr28:2737945-2737745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:32-228
               
               
               Cow position:chr28:4587962-4588159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:32-273
               
               
               Cow position:chr28:2872780-2873026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:32-274
               
               
               Cow position:chr28:32365709-32365952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:32-276
               
               
               Cow position:chr28:5128863-5128618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-277
               
               
               Cow position:chr28:15043998-15043751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:32-277
               
               
               Cow position:chr28:16841883-16841657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:32-277
               
               
               Cow position:chr28:26614747-26614984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):54, 69

               
               
               Conread position:32-278
               
               
               Cow position:chr28:2862728-2862980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:32-282
               
               
               Cow position:chr28:10863919-10863676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:32-282
               
               
               Cow position:chr28:33163601-33163348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:32-284
               
               
               Cow position:chr28:25727240-25727491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 117

               
               
               Conread position:32-285
               
               
               Cow position:chr28:3024049-3023790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:32-287
               
               
               Cow position:chr28:23007871-23007609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-289
               
               
               Cow position:chr28:7865187-7865452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:32-292
               
               
               Cow position:chr28:4536319-4536586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-292
               
               
               Cow position:chr28:11585342-11585076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):71, 118

               
               
               Conread position:32-293
               
               
               Cow position:chr28:9426489-9426223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:32-295
               
               
               Cow position:chr28:4188393-4188684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:32-295
               
               
               Cow position:chr28:23724592-23724331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 75

               
               
               Conread position:32-295
               
               
               Cow position:chr28:24017860-24018110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:32-295
               
               
               Cow position:chr28:30327228-30326963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-297
               
               
               Cow position:chr28:3144029-3143747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 197

               
               
               Conread position:32-297
               
               
               Cow position:chr28:3746068-3746333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:32-297
               
               
               Cow position:chr28:10172547-10172286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 41

               
               
               Conread position:32-297
               
               
               Cow position:chr28:30746865-30746599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:32-298
               
               
               Cow position:chr28:4016401-4016663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:32-298
               
               
               Cow position:chr28:9636590-9636325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:32-298
               
               
               Cow position:chr28:18591136-18591401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:32-298
               
               
               Cow position:chr28:21355089-21355363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:32-298
               
               
               Cow position:chr28:22371814-22371535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):200, 105

               
               
               Conread position:32-298
               
               
               Cow position:chr28:25249217-25249486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:32-299
               
               
               Cow position:chr28:11752278-11752008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):60, 126

               
               
               Conread position:32-301
               
               
               Cow position:chr28:3492922-3492649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-302
               
               
               Cow position:chr28:2132056-2131788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:32-302
               
               
               Cow position:chr28:21868318-21868594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:32-303
               
               
               Cow position:chr28:9285511-9285241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:32-303
               
               
               Cow position:chr28:16919297-16919032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:32-304
               
               
               Cow position:chr28:7549196-7548918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:32-305
               
               
               Cow position:chr28:9812146-9812410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:32-306
               
               
               Cow position:chr28:5437225-5436949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:32-306
               
               
               Cow position:chr28:6059606-6059328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:32-306
               
               
               Cow position:chr28:11866803-11866523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:32-306
               
               
               Cow position:chr28:11884657-11884381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:32-306
               
               
               Cow position:chr28:14997928-14998206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:32-308
               
               
               Cow position:chr28:20313135-20313421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:32-311
               
               
               Cow position:chr28:4841529-4841245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:32-311
               
               
               Cow position:chr28:6971481-6971203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:32-311
               
               
               Cow position:chr28:31110143-31109854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:32-314
               
               
               Cow position:chr28:4938697-4938950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:32-317
               
               
               Cow position:chr28:16211229-16210949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):241, 66

               
               
               Conread position:32-318
               
               
               Cow position:chr28:19026149-19025853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:32-320
               
               
               Cow position:chr28:12430470-12430754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):73, 105

               
               
               Conread position:32-321
               
               
               Cow position:chr28:25728061-25728342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:32-322
               
               
               Cow position:chr28:4834979-4834693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:32-322
               
               
               Cow position:chr28:12964433-12964731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:32-322
               
               
               Cow position:chr28:16204466-16204181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr28:23793440-23793162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:32-322
               
               
               Cow position:chr28:25806434-25806738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:33-188
               
               
               Cow position:chr28:24646408-24646561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:33-196
               
               
               Cow position:chr28:7608116-7607946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:33-232
               
               
               Cow position:chr28:3256661-3256864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:33-266
               
               
               Cow position:chr28:18186418-18186656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:33-297
               
               
               Cow position:chr28:25596496-25596761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:33-298
               
               
               Cow position:chr28:8408598-8408870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:33-298
               
               
               Cow position:chr28:9684453-9684201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):246, 46

               
               
               Conread position:33-302
               
               
               Cow position:chr28:16370212-16369947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:33-304
               
               
               Cow position:chr28:29199590-29199868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):70, 86

               
               
               Conread position:33-314
               
               
               Cow position:chr28:5931216-5931495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:33-318
               
               
               Cow position:chr28:22345883-22346170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:33-322
               
               
               Cow position:chr28:5236735-5236446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:33-322
               
               
               Cow position:chr28:19222278-19221994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 35

               
               
               Conread position:33-322
               
               
               Cow position:chr28:20409256-20409540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):70, 122

               
               
               Conread position:34-282
               
               
               Cow position:chr28:21598389-21598134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 116

               
               
               Conread position:34-297
               
               
               Cow position:chr28:30937798-30937540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:34-302
               
               
               Cow position:chr28:24966256-24966523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:34-305
               
               
               Cow position:chr28:14649213-14649482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:34-311
               
               
               Cow position:chr28:29434558-29434283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:34-314
               
               
               Cow position:chr28:4884398-4884104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):62, 146

               
               
               Conread position:34-321
               
               
               Cow position:chr28:3449164-3449457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:35-228
               
               
               Cow position:chr28:7751431-7751239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:35-277
               
               
               Cow position:chr28:12892567-12892326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:35-301
               
               
               Cow position:chr28:3408348-3408084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:35-302
               
               
               Cow position:chr28:5204055-5204331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:35-302
               
               
               Cow position:chr28:5684576-5684837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:35-302
               
               
               Cow position:chr28:6091229-6091501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:35-302
               
               
               Cow position:chr28:8787405-8787676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:35-304
               
               
               Cow position:chr28:28163951-28164223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:35-314
               
               
               Cow position:chr28:24082133-24082419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:35-316
               
               
               Cow position:chr28:26719216-26719494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):253, 73

               
               
               Conread position:35-322
               
               
               Cow position:chr28:22332401-22332680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:35-322
               
               
               Cow position:chr28:25399746-25400025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):242, 98

               
               
               Conread position:36-271
               
               
               Cow position:chr28:11786846-11786612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:36-275
               
               
               Cow position:chr28:21380745-21380988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:36-298
               
               
               Cow position:chr28:2960965-2960697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):63, 111

               
               
               Conread position:36-301
               
               
               Cow position:chr28:25701001-25700730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:36-307
               
               
               Cow position:chr28:29989246-29988971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:37-298
               
               
               Cow position:chr28:33051896-33052168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:37-302
               
               
               Cow position:chr28:8140350-8140618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:37-315
               
               
               Cow position:chr28:11079175-11079452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:37-322
               
               
               Cow position:chr28:1538036-1538317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:38-290
               
               
               Cow position:chr28:3914579-3914841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:43-276
               
               
               Cow position:chr28:22813139-22813368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:44-314
               
               
               Cow position:chr28:13474175-13474447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:45-301
               
               
               Cow position:chr28:32174507-32174764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:48-281
               
               
               Cow position:chr28:32734982-32735206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):231, 15

               
               
               Conread position:54-284
               
               
               Cow position:chr28:25128768-25129005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:56-322
               
               
               Cow position:chr28:5577412-5577684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:64-302
               
               
               Cow position:chr28:9740361-9740602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:66-287
               
               
               Cow position:chr28:16246166-16245944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 145

               
               
               Conread position:67-302
               
               
               Cow position:chr28:4181914-4182139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):212, 17

               
               
               Conread position:76-276
               
               
               Cow position:chr28:3411077-3410874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:85-277
               
               
               Cow position:chr28:7927096-7927285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:85-301
               
               
               Cow position:chr28:4045768-4045981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:88-281
               
               
               Cow position:chr28:3275415-3275606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:88-322
               
               
               Cow position:chr28:20759773-20759544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:90-282
               
               
               Cow position:chr28:4438639-4438828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):166, 18

               
               
               Conread position:92-297
               
               
               Cow position:chr28:11348352-11348554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:92-322
               
               
               Cow position:chr28:17601621-17601398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:94-293
               
               
               Cow position:chr28:10589091-10588895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:94-300
               
               
               Cow position:chr28:4179486-4179686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):185, 32

               
               
               Conread position:94-301
               
               
               Cow position:chr28:5139064-5138861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 162

               
               
               Conread position:94-322
               
               
               Cow position:chr28:3011340-3011118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:94-322
               
               
               Cow position:chr28:26982804-26982587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:95-314
               
               
               Cow position:chr28:4013020-4013232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:96-320
               
               
               Cow position:chr28:4823541-4823758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):182, 40

               
               
               Conread position:101-322
               
               
               Cow position:chr28:3445543-3445331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):166, 32

               
               
               Conread position:103-322
               
               
               Cow position:chr28:26531340-26531129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 36

               
               
               Conread position:104-298
               
               
               Cow position:chr28:7619210-7619018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-303
               
               
               Cow position:chr28:12070177-12070368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:104-314
               
               
               Cow position:chr28:7350600-7350802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-314
               
               
               Cow position:chr28:10977785-10977989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 29

               
               
               Conread position:106-286
               
               
               Cow position:chr28:7805480-7805301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:106-311
               
               
               Cow position:chr28:7388822-7388628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:106-322
               
               
               Cow position:chr28:28765960-28765751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:108-311
               
               
               Cow position:chr28:27161381-27161182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:110-311
               
               
               Cow position:chr28:22148071-22147873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:110-322
               
               
               Cow position:chr28:20397422-20397219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:111-322
               
               
               Cow position:chr28:777621-777825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):146, 26

               
               
               Conread position:113-277
               
               
               Cow position:chr28:2762145-2762306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:119-272
               
               
               Cow position:chr28:10964379-10964525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:119-311
               
               
               Cow position:chr28:7498192-7498002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:122-316
               
               
               Cow position:chr28:11816707-11816515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):184, 19

               
               
               Conread position:124-312
               
               
               Cow position:chr28:32179654-32179838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:128-322
               
               
               Cow position:chr28:17739788-17739974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:130-311
               
               
               Cow position:chr28:34248065-34247886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:131-302
               
               
               Cow position:chr28:4101486-4101656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:133-297
               
               
               Cow position:chr28:12991103-12991273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:135-297
               
               
               Cow position:chr28:6975210-6975372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:135-322
               
               
               Cow position:chr28:9705621-9705804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):5, 75

               
               
               Conread position:136-301
               
               
               Cow position:chr28:5254843-5255009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:136-306
               
               
               Cow position:chr28:8149662-8149492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:138-244
               
               
               Cow position:chr28:17393748-17393855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:138-311
               
               
               Cow position:chr28:2772685-2772857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):133, 40

               
               
               Conread position:141-297
               
               
               Cow position:chr28:8304222-8304378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:143-306
               
               
               Cow position:chr28:11987151-11987311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:143-306
               
               
               Cow position:chr28:12055389-12055549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:144-322
               
               
               Cow position:chr28:2898967-2899147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):50, 59

               
               
               Conread position:145-276
               
               
               Cow position:chr28:5205250-5205381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:145-295
               
               
               Cow position:chr28:17949134-17948984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-298
               
               
               Cow position:chr28:3740855-3741008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-301
               
               
               Cow position:chr28:24646572-24646726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:145-305
               
               
               Cow position:chr28:10775734-10775573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:145-322
               
               
               Cow position:chr28:17680601-17680774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 140

               
               
               Conread position:146-281
               
               
               Cow position:chr28:4248671-4248537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:146-287
               
               
               Cow position:chr28:4361468-4361330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:146-293
               
               
               Cow position:chr28:11016387-11016536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:149-314
               
               
               Cow position:chr28:7132104-7131942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:150-298
               
               
               Cow position:chr28:8396320-8396467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:152-287
               
               
               Cow position:chr28:3147468-3147599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:152-303
               
               
               Cow position:chr28:29850829-29850680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:156-311
               
               
               Cow position:chr28:3397207-3397060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:157-301
               
               
               Cow position:chr28:5805661-5805804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:157-322
               
               
               Cow position:chr28:7557743-7557581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:158-322
               
               
               Cow position:chr28:6563906-6563745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:163-281
               
               
               Cow position:chr28:25675508-25675391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:163-298
               
               
               Cow position:chr28:16879570-16879705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-298
               
               
               Cow position:chr28:30902123-30902258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-310
               
               
               Cow position:chr28:19039022-19038873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:166-294
               
               
               Cow position:chr28:4876443-4876569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:166-302
               
               
               Cow position:chr28:18797320-18797455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:166-308
               
               
               Cow position:chr28:4355548-4355688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:166-322
               
               
               Cow position:chr28:4877431-4877279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:167-297
               
               
               Cow position:chr28:24996612-24996481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:169-297
               
               
               Cow position:chr28:18533903-18533774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:169-309
               
               
               Cow position:chr28:4051201-4051343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:169-322
               
               
               Cow position:chr28:28501236-28501390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:171-302
               
               
               Cow position:chr28:2777535-2777667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:173-297
               
               
               Cow position:chr28:9109223-9109349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 92

               
               
               Conread position:174-297
               
               
               Cow position:chr28:10890727-10890604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-302
               
               
               Cow position:chr28:4364814-4364688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:175-300
               
               
               Cow position:chr28:10212418-10212293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:186-314
               
               
               Cow position:chr28:2151420-2151289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:188-298
               
               
               Cow position:chr28:3678384-3678496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:199-322
               
               
               Cow position:chr28:29500436-29500556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:203-322
               
               
               Cow position:chr28:4077309-4077188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:210-322
               
               
               Cow position:chr28:3759034-3759146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-314
               
               
               Cow position:chr29:31674460-31674774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:1-322
               
               
               Cow position:chr29:1556759-1557072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:2-322
               
               
               Cow position:chr29:29057009-29057319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 30

               
               
               Conread position:4-297
               
               
               Cow position:chr29:39111484-39111192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:4-306
               
               
               Cow position:chr29:26559416-26559113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:6-295
               
               
               Cow position:chr29:22613253-22613549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:7-224
               
               
               Cow position:chr29:11136059-11135845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:7-317
               
               
               Cow position:chr29:34773899-34773590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:8-248
               
               
               Cow position:chr29:24103712-24103466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:10-213
               
               
               Cow position:chr29:31594292-31594087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:10-295
               
               
               Cow position:chr29:30548622-30548898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:10-306
               
               
               Cow position:chr29:6844796-6844499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:11-297
               
               
               Cow position:chr29:41113024-41112757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:11-322
               
               
               Cow position:chr29:36209997-36210291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:15-301
               
               
               Cow position:chr29:28166374-28166094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):120, 131

               
               
               Conread position:19-320
               
               
               Cow position:chr29:34745819-34745516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 134

               
               
               Conread position:27-275
               
               
               Cow position:chr29:24578731-24578965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:27-288
               
               
               Cow position:chr29:10235278-10235021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 119

               
               
               Conread position:27-310
               
               
               Cow position:chr29:40299161-40298883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:27-311
               
               
               Cow position:chr29:10156454-10156168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 126

               
               
               Conread position:28-197
               
               
               Cow position:chr29:4328277-4328442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:28-314
               
               
               Cow position:chr29:17109819-17110098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 87

               
               
               Conread position:29-249
               
               
               Cow position:chr29:17668352-17668563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:29-270
               
               
               Cow position:chr29:23984106-23983858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:29-281
               
               
               Cow position:chr29:1229464-1229715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:29-294
               
               
               Cow position:chr29:36216970-36217233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 78

               
               
               Conread position:29-300
               
               
               Cow position:chr29:19762129-19762395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:29-301
               
               
               Cow position:chr29:9709549-9709824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:29-302
               
               
               Cow position:chr29:24624104-24624378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:29-305
               
               
               Cow position:chr29:11915673-11915952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:29-311
               
               
               Cow position:chr29:29314802-29314522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:29-322
               
               
               Cow position:chr29:12680011-12680301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:30-297
               
               
               Cow position:chr29:26778742-26779008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):181, 55

               
               
               Conread position:30-304
               
               
               Cow position:chr29:11646950-11647225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 6

               
               
               Conread position:30-322
               
               
               Cow position:chr29:11398069-11397770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:32-238
               
               
               Cow position:chr29:9718913-9718707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:32-248
               
               
               Cow position:chr29:40166101-40166319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 104

               
               
               Conread position:32-255
               
               
               Cow position:chr29:44682241-44682022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:32-272
               
               
               Cow position:chr29:2984740-2984989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:32-272
               
               
               Cow position:chr29:28868492-28868742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:32-276
               
               
               Cow position:chr29:15940777-15940523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-276
               
               
               Cow position:chr29:17607276-17607519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):52, 98

               
               
               Conread position:32-277
               
               
               Cow position:chr29:17154623-17154882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 195

               
               
               Conread position:32-277
               
               
               Cow position:chr29:26275473-26275710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:32-277
               
               
               Cow position:chr29:28446400-28446152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):76, 190

               
               
               Conread position:32-280
               
               
               Cow position:chr29:41811726-41811483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:32-282
               
               
               Cow position:chr29:20903428-20903181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:32-285
               
               
               Cow position:chr29:16195705-16195952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:32-285
               
               
               Cow position:chr29:43328496-43328756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:32-291
               
               
               Cow position:chr29:11054004-11053742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 175

               
               
               Conread position:32-298
               
               
               Cow position:chr29:732477-732742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:32-298
               
               
               Cow position:chr29:4875037-4874755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 123

               
               
               Conread position:32-298
               
               
               Cow position:chr29:35291946-35292217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 111

               
               
               Conread position:32-298
               
               
               Cow position:chr29:40117428-40117696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:32-301
               
               
               Cow position:chr29:1325297-1325566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:32-301
               
               
               Cow position:chr29:25091968-25092236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:32-301
               
               
               Cow position:chr29:25737562-25737285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:32-302
               
               
               Cow position:chr29:7966104-7966376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:32-302
               
               
               Cow position:chr29:10838806-10839070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-302
               
               
               Cow position:chr29:19949169-19949436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:32-302
               
               
               Cow position:chr29:35501795-35501524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:32-302
               
               
               Cow position:chr29:40959992-40959719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:32-306
               
               
               Cow position:chr29:32211200-32210938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-306
               
               
               Cow position:chr29:38580835-38581111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:32-307
               
               
               Cow position:chr29:23244024-23243746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:32-307
               
               
               Cow position:chr29:29974900-29975171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:32-308
               
               
               Cow position:chr29:32290458-32290743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 255

               
               
               Conread position:32-311
               
               
               Cow position:chr29:750051-749769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:32-311
               
               
               Cow position:chr29:22714868-22714588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr29:24252094-24252373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:32-311
               
               
               Cow position:chr29:26416216-26416489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:32-313
               
               
               Cow position:chr29:5186639-5186354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:32-314
               
               
               Cow position:chr29:29769495-29769211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-314
               
               
               Cow position:chr29:36530723-36531009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-314
               
               
               Cow position:chr29:42364158-42363876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-321
               
               
               Cow position:chr29:13639514-13639221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:32-322
               
               
               Cow position:chr29:2744416-2744126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 234

               
               
               Conread position:32-322
               
               
               Cow position:chr29:5892706-5892992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr29:8926598-8926312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr29:17296987-17297281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:32-322
               
               
               Cow position:chr29:24952544-24952830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr29:31489177-31489467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr29:37618162-37618451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:33-272
               
               
               Cow position:chr29:5098903-5098667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):106, 74

               
               
               Conread position:33-275
               
               
               Cow position:chr29:22162396-22162147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:33-275
               
               
               Cow position:chr29:27826383-27826622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:33-276
               
               
               Cow position:chr29:43009225-43008981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 127

               
               
               Conread position:33-298
               
               
               Cow position:chr29:43251310-43251040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:33-303
               
               
               Cow position:chr29:4520192-4520468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):73, 131

               
               
               Conread position:33-305
               
               
               Cow position:chr29:40096817-40097094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:33-308
               
               
               Cow position:chr29:27588780-27589058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:34-302
               
               
               Cow position:chr29:22029081-22028830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):146, 50

               
               
               Conread position:34-302
               
               
               Cow position:chr29:43099886-43099616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:34-312
               
               
               Cow position:chr29:356183-356462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:34-322
               
               
               Cow position:chr29:4120701-4120999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 261

               
               
               Conread position:34-322
               
               
               Cow position:chr29:31928839-31929129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:35-322
               
               
               Cow position:chr29:11562474-11562770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:35-322
               
               
               Cow position:chr29:19125202-19125473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):243, 69

               
               
               Conread position:35-322
               
               
               Cow position:chr29:36220386-36220685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-218
               
               
               Cow position:chr29:1124515-1124700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:36-277
               
               
               Cow position:chr29:28197146-28196905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:36-291
               
               
               Cow position:chr29:39567547-39567802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:37-281
               
               
               Cow position:chr29:27329753-27330000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:39-277
               
               
               Cow position:chr29:26615859-26615613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:39-282
               
               
               Cow position:chr29:4002759-4003001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):73, 51

               
               
               Conread position:39-322
               
               
               Cow position:chr29:31943743-31944011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):198, 61

               
               
               Conread position:42-322
               
               
               Cow position:chr29:41530716-41530994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:43-314
               
               
               Cow position:chr29:10058669-10058397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 170

               
               
               Conread position:44-322
               
               
               Cow position:chr29:45005757-45005480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:46-291
               
               
               Cow position:chr29:29176745-29176499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:47-315
               
               
               Cow position:chr29:34359109-34358839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):58, 105

               
               
               Conread position:52-311
               
               
               Cow position:chr29:1022180-1022433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 12

               
               
               Conread position:57-299
               
               
               Cow position:chr29:7624066-7624304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:82-303
               
               
               Cow position:chr29:5210401-5210621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:85-322
               
               
               Cow position:chr29:23874374-23874605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:86-305
               
               
               Cow position:chr29:7103473-7103690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:91-310
               
               
               Cow position:chr29:23220579-23220365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-278
               
               
               Cow position:chr29:18012480-18012663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 39

               
               
               Conread position:94-303
               
               
               Cow position:chr29:18085495-18085704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):185, 39

               
               
               Conread position:94-305
               
               
               Cow position:chr29:2263071-2262863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 51

               
               
               Conread position:94-318
               
               
               Cow position:chr29:28840079-28840301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-321
               
               
               Cow position:chr29:13028363-13028592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:94-322
               
               
               Cow position:chr29:17222339-17222560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):201, 47

               
               
               Conread position:94-322
               
               
               Cow position:chr29:30440857-30441082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:95-301
               
               
               Cow position:chr29:20770270-20770472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:95-322
               
               
               Cow position:chr29:29324487-29324277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):193, 31

               
               
               Conread position:96-322
               
               
               Cow position:chr29:21443413-21443193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):172, 45

               
               
               Conread position:97-302
               
               
               Cow position:chr29:29923647-29923443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):182, 40

               
               
               Conread position:98-322
               
               
               Cow position:chr29:44139316-44139102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:101-294
               
               
               Cow position:chr29:32176612-32176795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:101-314
               
               
               Cow position:chr29:23825288-23825069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:102-276
               
               
               Cow position:chr29:12626045-12625873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:104-295
               
               
               Cow position:chr29:38980135-38979953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:104-300
               
               
               Cow position:chr29:38978465-38978658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):187, 33

               
               
               Conread position:104-302
               
               
               Cow position:chr29:5063083-5063274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:106-281
               
               
               Cow position:chr29:36952362-36952194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:106-293
               
               
               Cow position:chr29:23825606-23825794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:108-240
               
               
               Cow position:chr29:31477177-31477046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:109-300
               
               
               Cow position:chr29:30708680-30708494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):159, 21

               
               
               Conread position:112-308
               
               
               Cow position:chr29:40873952-40874147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):174, 21

               
               
               Conread position:113-293
               
               
               Cow position:chr29:22167137-22166957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):163, 23

               
               
               Conread position:114-291
               
               
               Cow position:chr29:43441549-43441374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:114-318
               
               
               Cow position:chr29:31200201-31200402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:115-311
               
               
               Cow position:chr29:23155174-23155367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):164, 17

               
               
               Conread position:126-301
               
               
               Cow position:chr29:4070583-4070752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:130-277
               
               
               Cow position:chr29:30918504-30918653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:131-309
               
               
               Cow position:chr29:11527832-11527656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:135-322
               
               
               Cow position:chr29:22735144-22734960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:136-293
               
               
               Cow position:chr29:742684-742530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:136-322
               
               
               Cow position:chr29:36357090-36357271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:137-259
               
               
               Cow position:chr29:14445081-14444959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-305
               
               
               Cow position:chr29:28066455-28066617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr29:5520516-5520341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:143-302
               
               
               Cow position:chr29:4423470-4423311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 145

               
               
               Conread position:143-303
               
               
               Cow position:chr29:32197667-32197826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:143-306
               
               
               Cow position:chr29:9310570-9310733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:145-298
               
               
               Cow position:chr29:683518-683367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 112

               
               
               Conread position:145-305
               
               
               Cow position:chr29:39038297-39038137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-308
               
               
               Cow position:chr29:34687807-34687970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr29:21285332-21285497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:145-314
               
               
               Cow position:chr29:26540568-26540397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:146-314
               
               
               Cow position:chr29:17804508-17804673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:148-302
               
               
               Cow position:chr29:22723576-22723730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:155-314
               
               
               Cow position:chr29:9378619-9378778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-297
               
               
               Cow position:chr29:36781314-36781178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:163-300
               
               
               Cow position:chr29:22729558-22729694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr29:19363701-19363851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:166-299
               
               
               Cow position:chr29:29308578-29308446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:166-311
               
               
               Cow position:chr29:16672484-16672628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:168-322
               
               
               Cow position:chr29:15796481-15796630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:168-322
               
               
               Cow position:chr29:15797947-15798097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:169-298
               
               
               Cow position:chr29:7290772-7290903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:169-302
               
               
               Cow position:chr29:12890681-12890809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:175-306
               
               
               Cow position:chr29:8190198-8190067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-311
               
               
               Cow position:chr29:17022157-17022288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-322
               
               
               Cow position:chr29:25288916-25288776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):113, 51

               
               
               Conread position:181-302
               
               
               Cow position:chr29:18579827-18579710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:181-322
               
               
               Cow position:chr29:33393689-33393831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 7

               
               
               Conread position:184-322
               
               
               Cow position:chr29:8799004-8798866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:188-311
               
               
               Cow position:chr29:28948989-28949111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:188-321
               
               
               Cow position:chr29:27961952-27961822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:190-321
               
               
               Cow position:chr29:27997233-27997106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:192-322
               
               
               Cow position:chr29:43311526-43311399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:194-314
               
               
               Cow position:chr29:936228-936346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:200-322
               
               
               Cow position:chr29:26631068-26631192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:201-322
               
               
               Cow position:chr29:22335201-22335080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-225
               
               
               Cow position:chr3:70631819-70632051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-274
               
               
               Cow position:chr3:58973103-58973375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:1-295
               
               
               Cow position:chr3:19006468-19006759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:1-298
               
               
               Cow position:chr3:61143909-61144201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):107, 9

               
               
               Conread position:1-312
               
               
               Cow position:chr3:76713521-76713199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:1-322
               
               
               Cow position:chr3:30463365-30463055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:2-317
               
               
               Cow position:chr3:48296511-48296818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:2-318
               
               
               Cow position:chr3:80071926-80072260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 143

               
               
               Conread position:5-268
               
               
               Cow position:chr3:75711121-75711379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:6-271
               
               
               Cow position:chr3:74754141-74754401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):103, 6

               
               
               Conread position:6-286
               
               
               Cow position:chr3:50614445-50614733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 145

               
               
               Conread position:6-293
               
               
               Cow position:chr3:56476487-56476780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):5, 138

               
               
               Conread position:6-297
               
               
               Cow position:chr3:45534483-45534193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:6-300
               
               
               Cow position:chr3:53150142-53150436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-302
               
               
               Cow position:chr3:8393745-8394049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:6-314
               
               
               Cow position:chr3:30179888-30180203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:6-322
               
               
               Cow position:chr3:77365491-77365167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):5, 25

               
               
               Conread position:6-322
               
               
               Cow position:chr3:78077006-78077310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:8-249
               
               
               Cow position:chr3:81277888-81277638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:8-297
               
               
               Cow position:chr3:61224934-61224640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:8-301
               
               
               Cow position:chr3:48362896-48363178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:8-306
               
               
               Cow position:chr3:12712108-12711806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:8-321
               
               
               Cow position:chr3:3738299-3738610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:9-276
               
               
               Cow position:chr3:28908390-28908122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:9-293
               
               
               Cow position:chr3:17895656-17895945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:9-295
               
               
               Cow position:chr3:82460986-82461279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:9-320
               
               
               Cow position:chr3:68627870-68627569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:10-287
               
               
               Cow position:chr3:55272233-55271953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:10-302
               
               
               Cow position:chr3:38863927-38864234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:10-306
               
               
               Cow position:chr3:3985140-3985432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:11-250
               
               
               Cow position:chr3:65800408-65800640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:11-276
               
               
               Cow position:chr3:5374148-5374409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:11-294
               
               
               Cow position:chr3:60597356-60597641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:11-303
               
               
               Cow position:chr3:53739373-53739077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 133

               
               
               Conread position:11-305
               
               
               Cow position:chr3:53221827-53222121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 132

               
               
               Conread position:11-306
               
               
               Cow position:chr3:54434788-54435084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 130

               
               
               Conread position:11-310
               
               
               Cow position:chr3:57764038-57764333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:11-315
               
               
               Cow position:chr3:2393151-2392848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:11-315
               
               
               Cow position:chr3:83455335-83455032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:11-321
               
               
               Cow position:chr3:55970319-55970634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr3:29596205-29596517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr3:36375727-36375418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:12-322
               
               
               Cow position:chr3:7661666-7661977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:13-298
               
               
               Cow position:chr3:68616511-68616227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:15-322
               
               
               Cow position:chr3:64011001-64010690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:17-322
               
               
               Cow position:chr3:72390899-72391208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:18-277
               
               
               Cow position:chr3:59799064-59799330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):14, 123

               
               
               Conread position:18-296
               
               
               Cow position:chr3:19404137-19404397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):168, 12

               
               
               Conread position:19-296
               
               
               Cow position:chr3:5097024-5097307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 134

               
               
               Conread position:19-306
               
               
               Cow position:chr3:70334882-70334584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:25-322
               
               
               Cow position:chr3:48810810-48810513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 110

               
               
               Conread position:26-322
               
               
               Cow position:chr3:16752425-16752134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 53

               
               
               Conread position:27-246
               
               
               Cow position:chr3:34294456-34294217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:27-276
               
               
               Cow position:chr3:55109786-55109532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:27-292
               
               
               Cow position:chr3:4050021-4050290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:27-293
               
               
               Cow position:chr3:32584982-32585248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 74

               
               
               Conread position:27-298
               
               
               Cow position:chr3:59630673-59630408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):256, 88

               
               
               Conread position:27-302
               
               
               Cow position:chr3:11987156-11987436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:27-302
               
               
               Cow position:chr3:48073045-48072775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:27-307
               
               
               Cow position:chr3:65413451-65413165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):82, 122

               
               
               Conread position:28-297
               
               
               Cow position:chr3:48252713-48252988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:28-298
               
               
               Cow position:chr3:24935201-24935467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:29-258
               
               
               Cow position:chr3:73759685-73759454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:29-297
               
               
               Cow position:chr3:80053713-80053440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:29-298
               
               
               Cow position:chr3:67930351-67930082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:29-299
               
               
               Cow position:chr3:58969070-58968797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 116

               
               
               Conread position:29-302
               
               
               Cow position:chr3:26903946-26904215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:29-310
               
               
               Cow position:chr3:58540698-58540407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):34, 145

               
               
               Conread position:29-311
               
               
               Cow position:chr3:22716449-22716180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):216, 57

               
               
               Conread position:29-322
               
               
               Cow position:chr3:65968989-65969294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 213

               
               
               Conread position:30-248
               
               
               Cow position:chr3:31047119-31046899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 82

               
               
               Conread position:30-277
               
               
               Cow position:chr3:79094216-79093961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:30-305
               
               
               Cow position:chr3:73708880-73709156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:30-306
               
               
               Cow position:chr3:81087789-81087528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:31-306
               
               
               Cow position:chr3:59610888-59610610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:32-222
               
               
               Cow position:chr3:77665942-77665743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:32-230
               
               
               Cow position:chr3:5851090-5850894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):60, 102

               
               
               Conread position:32-240
               
               
               Cow position:chr3:56523596-56523401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:32-245
               
               
               Cow position:chr3:69750867-69750661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):147, 35

               
               
               Conread position:32-252
               
               
               Cow position:chr3:66610009-66609787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:32-266
               
               
               Cow position:chr3:23445060-23444817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:32-266
               
               
               Cow position:chr3:26553882-26553644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:32-269
               
               
               Cow position:chr3:7940722-7940483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:32-274
               
               
               Cow position:chr3:49327775-49328023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:32-275
               
               
               Cow position:chr3:61840111-61840355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-275
               
               
               Cow position:chr3:72675926-72676171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:32-277
               
               
               Cow position:chr3:26065837-26066083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-277
               
               
               Cow position:chr3:29887588-29887338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 99

               
               
               Conread position:32-277
               
               
               Cow position:chr3:45647514-45647762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:32-277
               
               
               Cow position:chr3:68881278-68881040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-277
               
               
               Cow position:chr3:73915970-73915726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:32-277
               
               
               Cow position:chr3:74533186-74533431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:32-281
               
               
               Cow position:chr3:34669894-34669647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:32-282
               
               
               Cow position:chr3:9641399-9641655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:32-282
               
               
               Cow position:chr3:24352694-24352947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-282
               
               
               Cow position:chr3:49650219-49650475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:32-282
               
               
               Cow position:chr3:52652241-52651993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:32-284
               
               
               Cow position:chr3:31850536-31850286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:32-285
               
               
               Cow position:chr3:2216197-2216458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:32-287
               
               
               Cow position:chr3:82020006-82019747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:32-287
               
               
               Cow position:chr3:83815955-83815697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-292
               
               
               Cow position:chr3:26920742-26921007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:32-293
               
               
               Cow position:chr3:22232818-22232557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-293
               
               
               Cow position:chr3:35153455-35153715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:32-293
               
               
               Cow position:chr3:73764362-73764101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:32-294
               
               
               Cow position:chr3:54945962-54946230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-295
               
               
               Cow position:chr3:116031-116290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:32-296
               
               
               Cow position:chr3:14626324-14626049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:32-297
               
               
               Cow position:chr3:14552712-14552977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 154

               
               
               Conread position:32-297
               
               
               Cow position:chr3:17937001-17936738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:32-297
               
               
               Cow position:chr3:20678001-20677740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:32-297
               
               
               Cow position:chr3:53113007-53113277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-297
               
               
               Cow position:chr3:55124444-55124182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:32-297
               
               
               Cow position:chr3:57624297-57624566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:32-297
               
               
               Cow position:chr3:63269059-63269323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:32-297
               
               
               Cow position:chr3:64281098-64280829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 125

               
               
               Conread position:32-298
               
               
               Cow position:chr3:15052118-15051850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:32-298
               
               
               Cow position:chr3:18393554-18393294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):169, 98

               
               
               Conread position:32-298
               
               
               Cow position:chr3:18686741-18687009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 75

               
               
               Conread position:32-298
               
               
               Cow position:chr3:23471630-23471353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:32-298
               
               
               Cow position:chr3:60265408-60265151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:32-298
               
               
               Cow position:chr3:71237990-71238258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-299
               
               
               Cow position:chr3:68708170-68707909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-300
               
               
               Cow position:chr3:26970661-26970918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:32-300
               
               
               Cow position:chr3:78092672-78092407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:32-301
               
               
               Cow position:chr3:23105532-23105256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-302
               
               
               Cow position:chr3:7337936-7337677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr3:26874424-26874698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:32-302
               
               
               Cow position:chr3:56059640-56059918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 114

               
               
               Conread position:32-302
               
               
               Cow position:chr3:70895884-70896155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:32-302
               
               
               Cow position:chr3:74079805-74079530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:32-302
               
               
               Cow position:chr3:74234030-74234293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:32-305
               
               
               Cow position:chr3:14465873-14465597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 230

               
               
               Conread position:32-305
               
               
               Cow position:chr3:23169232-23168956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 123

               
               
               Conread position:32-305
               
               
               Cow position:chr3:50768516-50768788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-305
               
               
               Cow position:chr3:65058536-65058807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:32-305
               
               
               Cow position:chr3:70609460-70609735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 186

               
               
               Conread position:32-306
               
               
               Cow position:chr3:1830735-1830465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):60, 112

               
               
               Conread position:32-306
               
               
               Cow position:chr3:19792726-19793016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 227

               
               
               Conread position:32-306
               
               
               Cow position:chr3:81371481-81371758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:32-307
               
               
               Cow position:chr3:18497852-18498127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:32-310
               
               
               Cow position:chr3:70401736-70402011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr3:5100933-5100654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):246, 89

               
               
               Conread position:32-311
               
               
               Cow position:chr3:13507300-13507584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:32-311
               
               
               Cow position:chr3:15752797-15752520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr3:17447774-17447499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:32-311
               
               
               Cow position:chr3:70899729-70900006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:32-311
               
               
               Cow position:chr3:81471267-81470980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:32-312
               
               
               Cow position:chr3:39661619-39661340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:32-313
               
               
               Cow position:chr3:36418632-36418368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:32-314
               
               
               Cow position:chr3:8060961-8061244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-314
               
               
               Cow position:chr3:15751888-15751594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 154

               
               
               Conread position:32-314
               
               
               Cow position:chr3:39970034-39969743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-314
               
               
               Cow position:chr3:52608021-52608301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:32-314
               
               
               Cow position:chr3:54506543-54506826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:32-314
               
               
               Cow position:chr3:70762289-70762003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:32-314
               
               
               Cow position:chr3:71246859-71247138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:32-316
               
               
               Cow position:chr3:67744789-67744505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:32-317
               
               
               Cow position:chr3:525184-525472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-317
               
               
               Cow position:chr3:44932346-44932635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:32-320
               
               
               Cow position:chr3:27940294-27940013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:32-320
               
               
               Cow position:chr3:54100889-54100595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:32-321
               
               
               Cow position:chr3:51578486-51578205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-322
               
               
               Cow position:chr3:11063216-11063487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:32-322
               
               
               Cow position:chr3:14601879-14601583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:32-322
               
               
               Cow position:chr3:15158875-15159154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:32-322
               
               
               Cow position:chr3:17222310-17222013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr3:45881743-45882019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:32-322
               
               
               Cow position:chr3:53046825-53046538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr3:53270662-53270953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:32-322
               
               
               Cow position:chr3:54782183-54781873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):76, 131

               
               
               Conread position:32-322
               
               
               Cow position:chr3:55319069-55318778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:32-322
               
               
               Cow position:chr3:62046496-62046791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:32-322
               
               
               Cow position:chr3:66900908-66900606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr3:70565904-70565614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr3:73394954-73395237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:32-322
               
               
               Cow position:chr3:75158193-75158478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-322
               
               
               Cow position:chr3:83474580-83474874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:33-203
               
               
               Cow position:chr3:49793238-49793404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 45

               
               
               Conread position:33-240
               
               
               Cow position:chr3:56301509-56301313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:33-276
               
               
               Cow position:chr3:11711792-11712046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:33-293
               
               
               Cow position:chr3:76922828-76922565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:33-296
               
               
               Cow position:chr3:75107629-75107875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:33-298
               
               
               Cow position:chr3:67704377-67704649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:33-301
               
               
               Cow position:chr3:75080605-75080866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):62, 105

               
               
               Conread position:33-302
               
               
               Cow position:chr3:76268146-76267868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:33-306
               
               
               Cow position:chr3:52863350-52863072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:33-306
               
               
               Cow position:chr3:73467457-73467746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-314
               
               
               Cow position:chr3:57273901-57274180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 56

               
               
               Conread position:33-314
               
               
               Cow position:chr3:80564798-80565084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:33-322
               
               
               Cow position:chr3:74134540-74134828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):74, 120

               
               
               Conread position:34-281
               
               
               Cow position:chr3:10347191-10347443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):76, 176

               
               
               Conread position:34-284
               
               
               Cow position:chr3:26219214-26218962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:34-297
               
               
               Cow position:chr3:59884237-59883964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:34-298
               
               
               Cow position:chr3:55835989-55835717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:34-298
               
               
               Cow position:chr3:60264879-60264613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:34-302
               
               
               Cow position:chr3:12705710-12705439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:34-302
               
               
               Cow position:chr3:27274367-27274635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:34-308
               
               
               Cow position:chr3:73443251-73442983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:34-310
               
               
               Cow position:chr3:55189920-55189638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:35-271
               
               
               Cow position:chr3:76015127-76015368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:35-276
               
               
               Cow position:chr3:74502485-74502244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:35-287
               
               
               Cow position:chr3:75479839-75480092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:35-293
               
               
               Cow position:chr3:58767106-58767361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:35-299
               
               
               Cow position:chr3:76387762-76387504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:35-306
               
               
               Cow position:chr3:6182363-6182116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):266, 49

               
               
               Conread position:35-308
               
               
               Cow position:chr3:57760335-57760611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:35-310
               
               
               Cow position:chr3:17935097-17934822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:35-310
               
               
               Cow position:chr3:50069601-50069878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:35-314
               
               
               Cow position:chr3:59473957-59474240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:35-314
               
               
               Cow position:chr3:80581500-80581774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:35-322
               
               
               Cow position:chr3:22676254-22675987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:35-322
               
               
               Cow position:chr3:30940652-30940930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 92

               
               
               Conread position:35-322
               
               
               Cow position:chr3:68156575-68156848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):189, 43

               
               
               Conread position:35-322
               
               
               Cow position:chr3:71497307-71497009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:36-290
               
               
               Cow position:chr3:58765239-58764979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:36-292
               
               
               Cow position:chr3:79292667-79292926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:36-306
               
               
               Cow position:chr3:18066973-18067243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 159

               
               
               Conread position:36-311
               
               
               Cow position:chr3:15506289-15506565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:37-281
               
               
               Cow position:chr3:59101667-59101913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:37-311
               
               
               Cow position:chr3:53508460-53508727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:38-290
               
               
               Cow position:chr3:62826779-62826524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:38-308
               
               
               Cow position:chr3:74242835-74243105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):61, 116

               
               
               Conread position:39-301
               
               
               Cow position:chr3:53790696-53790430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:40-318
               
               
               Cow position:chr3:59691740-59692011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:40-322
               
               
               Cow position:chr3:57577537-57577817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:40-322
               
               
               Cow position:chr3:63179702-63179980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 101

               
               
               Conread position:42-282
               
               
               Cow position:chr3:66292333-66292089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 100

               
               
               Conread position:42-303
               
               
               Cow position:chr3:77581952-77582215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:42-314
               
               
               Cow position:chr3:15153536-15153808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:42-322
               
               
               Cow position:chr3:19585705-19585984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:44-277
               
               
               Cow position:chr3:74600957-74601196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:44-298
               
               
               Cow position:chr3:23408506-23408255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:44-300
               
               
               Cow position:chr3:10958397-10958135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:45-275
               
               
               Cow position:chr3:46541981-46541749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:45-322
               
               
               Cow position:chr3:72473758-72474042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:46-298
               
               
               Cow position:chr3:55177905-55177643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:47-295
               
               
               Cow position:chr3:4461642-4461382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:47-311
               
               
               Cow position:chr3:62789331-62789059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):57, 104

               
               
               Conread position:48-301
               
               
               Cow position:chr3:54290650-54290406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):230, 6

               
               
               Conread position:49-321
               
               
               Cow position:chr3:79196610-79196882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:52-277
               
               
               Cow position:chr3:74584072-74584289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:52-301
               
               
               Cow position:chr3:3883965-3883711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:53-265
               
               
               Cow position:chr3:64135582-64135788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:55-302
               
               
               Cow position:chr3:1785385-1785139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:57-297
               
               
               Cow position:chr3:3889708-3889468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:57-301
               
               
               Cow position:chr3:76155846-76156093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:57-302
               
               
               Cow position:chr3:17331585-17331828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:57-321
               
               
               Cow position:chr3:73820511-73820243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:60-302
               
               
               Cow position:chr3:78093522-78093282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:60-311
               
               
               Cow position:chr3:17235347-17235103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):48, 29

               
               
               Conread position:60-314
               
               
               Cow position:chr3:18426838-18426580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:70-305
               
               
               Cow position:chr3:22165540-22165306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:79-308
               
               
               Cow position:chr3:4480828-4481055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:79-314
               
               
               Cow position:chr3:59604731-59604962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:82-309
               
               
               Cow position:chr3:55983984-55984210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:84-310
               
               
               Cow position:chr3:49363008-49363223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:85-302
               
               
               Cow position:chr3:14194287-14194073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:86-292
               
               
               Cow position:chr3:3478360-3478158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):169, 23

               
               
               Conread position:86-306
               
               
               Cow position:chr3:48900445-48900222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 120

               
               
               Conread position:86-308
               
               
               Cow position:chr3:7427893-7428111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:89-310
               
               
               Cow position:chr3:48459438-48459213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:89-316
               
               
               Cow position:chr3:10677742-10677507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:92-277
               
               
               Cow position:chr3:18607563-18607752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:93-272
               
               
               Cow position:chr3:3471940-3472117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:93-320
               
               
               Cow position:chr3:47753124-47753355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:94-257
               
               
               Cow position:chr3:12670712-12670553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-258
               
               
               Cow position:chr3:46108717-46108881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:94-258
               
               
               Cow position:chr3:54030182-54030344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:94-280
               
               
               Cow position:chr3:73237097-73237281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr3:15951008-15950809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr3:31361321-31361532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:94-302
               
               
               Cow position:chr3:57704226-57704440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:94-306
               
               
               Cow position:chr3:15443826-15443618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-306
               
               
               Cow position:chr3:58318050-58317837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:94-310
               
               
               Cow position:chr3:59621743-59621533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-311
               
               
               Cow position:chr3:84175922-84175706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):189, 59

               
               
               Conread position:94-314
               
               
               Cow position:chr3:1517609-1517393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:94-314
               
               
               Cow position:chr3:20993715-20993934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:94-314
               
               
               Cow position:chr3:22221223-22221446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:94-315
               
               
               Cow position:chr3:5366674-5366884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-320
               
               
               Cow position:chr3:3316909-3316690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):180, 34

               
               
               Conread position:94-321
               
               
               Cow position:chr3:19626606-19626388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr3:1036930-1037148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr3:3656417-3656638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:94-322
               
               
               Cow position:chr3:71231302-71231518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr3:79645537-79645307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):147, 196

               
               
               Conread position:95-279
               
               
               Cow position:chr3:28496732-28496919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):111, 42

               
               
               Conread position:95-286
               
               
               Cow position:chr3:18001105-18001291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):182, 36

               
               
               Conread position:98-317
               
               
               Cow position:chr3:74900731-74900521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:101-276
               
               
               Cow position:chr3:75608407-75608579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:101-282
               
               
               Cow position:chr3:74846801-74846622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:101-295
               
               
               Cow position:chr3:31350195-31350005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):99, 32

               
               
               Conread position:101-310
               
               
               Cow position:chr3:15172988-15173198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):173, 51

               
               
               Conread position:101-311
               
               
               Cow position:chr3:44330528-44330321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:101-316
               
               
               Cow position:chr3:10103955-10104160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:104-264
               
               
               Cow position:chr3:70614573-70614418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-294
               
               
               Cow position:chr3:71474495-71474306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:104-301
               
               
               Cow position:chr3:4548928-4549133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:104-311
               
               
               Cow position:chr3:69785713-69785509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:104-312
               
               
               Cow position:chr3:9116941-9117143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr3:32409124-32409340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):179, 26

               
               
               Conread position:105-318
               
               
               Cow position:chr3:73460878-73461090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):207, 41

               
               
               Conread position:106-286
               
               
               Cow position:chr3:10591603-10591413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:106-297
               
               
               Cow position:chr3:63177394-63177586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:106-305
               
               
               Cow position:chr3:34871480-34871677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:106-314
               
               
               Cow position:chr3:64196739-64196945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-322
               
               
               Cow position:chr3:53704051-53703827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):167, 36

               
               
               Conread position:106-322
               
               
               Cow position:chr3:83215175-83215389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:107-305
               
               
               Cow position:chr3:37041331-37041528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:107-320
               
               
               Cow position:chr3:75238374-75238578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:108-272
               
               
               Cow position:chr3:81277553-81277391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:108-301
               
               
               Cow position:chr3:59299493-59299682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:109-322
               
               
               Cow position:chr3:23203317-23203109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:111-306
               
               
               Cow position:chr3:61467272-61467080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-314
               
               
               Cow position:chr3:76269819-76270008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:113-322
               
               
               Cow position:chr3:10668957-10668759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):141, 17

               
               
               Conread position:113-322
               
               
               Cow position:chr3:27976604-27976403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:116-314
               
               
               Cow position:chr3:14546926-14547119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:120-302
               
               
               Cow position:chr3:74802139-74801959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:124-322
               
               
               Cow position:chr3:59933302-59933500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):150, 17

               
               
               Conread position:127-291
               
               
               Cow position:chr3:11292313-11292153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:128-302
               
               
               Cow position:chr3:75173648-75173481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:130-297
               
               
               Cow position:chr3:3946973-3947141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:130-322
               
               
               Cow position:chr3:56704386-56704190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:132-277
               
               
               Cow position:chr3:29828210-29828065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:136-314
               
               
               Cow position:chr3:64373216-64373039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 156

               
               
               Conread position:137-302
               
               
               Cow position:chr3:52845502-52845663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:137-307
               
               
               Cow position:chr3:71423609-71423443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:139-277
               
               
               Cow position:chr3:50593969-50593833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:142-298
               
               
               Cow position:chr3:8349618-8349459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:143-297
               
               
               Cow position:chr3:64648440-64648594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-322
               
               
               Cow position:chr3:9120793-9120965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:144-293
               
               
               Cow position:chr3:44961055-44960907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:144-322
               
               
               Cow position:chr3:21641937-21642116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):153, 59

               
               
               Conread position:144-322
               
               
               Cow position:chr3:53084039-53083863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 136

               
               
               Conread position:145-282
               
               
               Cow position:chr3:51349773-51349910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-284
               
               
               Cow position:chr3:67626393-67626252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:145-301
               
               
               Cow position:chr3:21997838-21997682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-301
               
               
               Cow position:chr3:69650939-69650783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-302
               
               
               Cow position:chr3:68004752-68004596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr3:20333957-20334127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr3:82629266-82629433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:145-314
               
               
               Cow position:chr3:23132219-23132048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr3:5305748-5305928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:146-291
               
               
               Cow position:chr3:41652327-41652473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:146-295
               
               
               Cow position:chr3:16505524-16505381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:147-296
               
               
               Cow position:chr3:73299033-73299180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):127, 49

               
               
               Conread position:148-300
               
               
               Cow position:chr3:38100094-38100248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:148-318
               
               
               Cow position:chr3:26603602-26603431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 135

               
               
               Conread position:149-310
               
               
               Cow position:chr3:59919986-59920141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:150-320
               
               
               Cow position:chr3:8814158-8813983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:155-295
               
               
               Cow position:chr3:10732850-10732989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 124

               
               
               Conread position:158-311
               
               
               Cow position:chr3:57877529-57877682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:159-298
               
               
               Cow position:chr3:22924411-22924272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:161-302
               
               
               Cow position:chr3:17058580-17058439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:162-294
               
               
               Cow position:chr3:24371889-24372020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:164-314
               
               
               Cow position:chr3:67407397-67407247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-300
               
               
               Cow position:chr3:82123576-82123442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-302
               
               
               Cow position:chr3:35238984-35239119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):113, 86

               
               
               Conread position:166-313
               
               
               Cow position:chr3:28556193-28556047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:166-314
               
               
               Cow position:chr3:20021240-20021388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:168-305
               
               
               Cow position:chr3:8523177-8523045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:169-277
               
               
               Cow position:chr3:16601416-16601524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:170-311
               
               
               Cow position:chr3:25692004-25692141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:171-314
               
               
               Cow position:chr3:75966805-75966662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:172-298
               
               
               Cow position:chr3:56943949-56943823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-277
               
               
               Cow position:chr3:31115292-31115188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-302
               
               
               Cow position:chr3:19788852-19788723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr3:73589793-73589642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:174-296
               
               
               Cow position:chr3:73701483-73701608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:174-322
               
               
               Cow position:chr3:73421514-73421372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:178-309
               
               
               Cow position:chr3:76415920-76415790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:183-311
               
               
               Cow position:chr3:20175036-20175165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:188-311
               
               
               Cow position:chr3:81547096-81547218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:189-311
               
               
               Cow position:chr3:27670409-27670530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:190-322
               
               
               Cow position:chr3:17531743-17531616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:199-314
               
               
               Cow position:chr3:43896056-43895943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:200-322
               
               
               Cow position:chr3:21959664-21959786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-302
               
               
               Cow position:chr3:4518177-4518076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-322
               
               
               Cow position:chr3:68094150-68094275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-302
               
               
               Cow position:chr4:19597500-19597200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:1-306
               
               
               Cow position:chr4:18974254-18974550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 24

               
               
               Conread position:2-287
               
               
               Cow position:chr4:25984046-25984328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):238, 87

               
               
               Conread position:2-297
               
               
               Cow position:chr4:11194009-11194304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:2-311
               
               
               Cow position:chr4:45367551-45367872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:2-314
               
               
               Cow position:chr4:10732045-10732356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 26

               
               
               Conread position:2-314
               
               
               Cow position:chr4:23599998-23600305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:2-314
               
               
               Cow position:chr4:42423975-42423669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:2-316
               
               
               Cow position:chr4:59377735-59378047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:4-277
               
               
               Cow position:chr4:68889737-68889462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:4-313
               
               
               Cow position:chr4:19578226-19578522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:6-302
               
               
               Cow position:chr4:38944432-38944134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):67, 6

               
               
               Conread position:6-302
               
               
               Cow position:chr4:52748629-52748335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:6-308
               
               
               Cow position:chr4:44839064-44838765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:6-311
               
               
               Cow position:chr4:58881134-58880825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-322
               
               
               Cow position:chr4:25197676-25197354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 149

               
               
               Conread position:6-322
               
               
               Cow position:chr4:45662683-45662371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:6-322
               
               
               Cow position:chr4:63349652-63349339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:7-305
               
               
               Cow position:chr4:1026399-1026110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:7-305
               
               
               Cow position:chr4:49158962-49158667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 137

               
               
               Conread position:7-314
               
               
               Cow position:chr4:509074-508772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:8-255
               
               
               Cow position:chr4:11331919-11332174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:8-322
               
               
               Cow position:chr4:54479077-54478778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 5

               
               
               Conread position:9-314
               
               
               Cow position:chr4:47730683-47731000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:10-242
               
               
               Cow position:chr4:27540447-27540683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:10-266
               
               
               Cow position:chr4:20139694-20139429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:10-284
               
               
               Cow position:chr4:24002138-24001860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:10-301
               
               
               Cow position:chr4:68233804-68234089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):168, 33

               
               
               Conread position:10-310
               
               
               Cow position:chr4:51784007-51784318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-315
               
               
               Cow position:chr4:12591385-12591077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:10-322
               
               
               Cow position:chr4:21531816-21531504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 132

               
               
               Conread position:10-322
               
               
               Cow position:chr4:48152534-48152235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:10-322
               
               
               Cow position:chr4:59871314-59871617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:11-282
               
               
               Cow position:chr4:63459379-63459119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:11-302
               
               
               Cow position:chr4:23847220-23846928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:11-322
               
               
               Cow position:chr4:58248234-58248539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:13-311
               
               
               Cow position:chr4:12903648-12903955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:14-276
               
               
               Cow position:chr4:37935451-37935187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:14-322
               
               
               Cow position:chr4:22101427-22101125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:17-302
               
               
               Cow position:chr4:13941294-13941580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 130

               
               
               Conread position:19-249
               
               
               Cow position:chr4:65841925-65841695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 64

               
               
               Conread position:19-302
               
               
               Cow position:chr4:49794507-49794782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:19-322
               
               
               Cow position:chr4:3388381-3388683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:19-322
               
               
               Cow position:chr4:34630732-34631043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:23-315
               
               
               Cow position:chr4:22345177-22344880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:24-298
               
               
               Cow position:chr4:65463639-65463389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:26-206
               
               
               Cow position:chr4:19463339-19463524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:26-270
               
               
               Cow position:chr4:33395850-33395606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:26-277
               
               
               Cow position:chr4:54111591-54111840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:27-205
               
               
               Cow position:chr4:17124451-17124265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:27-281
               
               
               Cow position:chr4:53346171-53346434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 126

               
               
               Conread position:27-286
               
               
               Cow position:chr4:55395605-55395871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:27-298
               
               
               Cow position:chr4:12127797-12127519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:27-313
               
               
               Cow position:chr4:27529962-27530252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 282

               
               
               Conread position:28-301
               
               
               Cow position:chr4:56240004-56239736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:28-309
               
               
               Cow position:chr4:37704112-37704398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:28-322
               
               
               Cow position:chr4:19118851-19119155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):5, 272

               
               
               Conread position:29-165
               
               
               Cow position:chr4:34223966-34224102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 62

               
               
               Conread position:29-253
               
               
               Cow position:chr4:21064885-21065111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:29-268
               
               
               Cow position:chr4:21257278-21257034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:29-276
               
               
               Cow position:chr4:44496226-44496468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:29-277
               
               
               Cow position:chr4:41602696-41602948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:29-282
               
               
               Cow position:chr4:12560877-12561144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 119

               
               
               Conread position:29-288
               
               
               Cow position:chr4:34369606-34369338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:29-295
               
               
               Cow position:chr4:25879242-25879507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:29-301
               
               
               Cow position:chr4:7571257-7571535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:29-302
               
               
               Cow position:chr4:25888983-25888711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:29-308
               
               
               Cow position:chr4:10378955-10379243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 122

               
               
               Conread position:29-311
               
               
               Cow position:chr4:14152935-14153240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:29-311
               
               
               Cow position:chr4:32726073-32726356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:29-311
               
               
               Cow position:chr4:44782220-44782507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:29-311
               
               
               Cow position:chr4:49629330-49629614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 111

               
               
               Conread position:29-322
               
               
               Cow position:chr4:41867291-41867584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:29-322
               
               
               Cow position:chr4:51768959-51769246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:29-322
               
               
               Cow position:chr4:51898854-51899151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:29-322
               
               
               Cow position:chr4:66547920-66547627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:30-293
               
               
               Cow position:chr4:19582769-19582503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 102

               
               
               Conread position:30-308
               
               
               Cow position:chr4:36577781-36577497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 5

               
               
               Conread position:30-311
               
               
               Cow position:chr4:21874665-21874935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):77, 5

               
               
               Conread position:30-318
               
               
               Cow position:chr4:65650277-65649992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 61

               
               
               Conread position:30-322
               
               
               Cow position:chr4:17186505-17186213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:32-191
               
               
               Cow position:chr4:19438310-19438478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:32-191
               
               
               Cow position:chr4:33357784-33357949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-195
               
               
               Cow position:chr4:47047743-47047912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 121

               
               
               Conread position:32-223
               
               
               Cow position:chr4:20299124-20299320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:32-227
               
               
               Cow position:chr4:19497402-19497217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:32-241
               
               
               Cow position:chr4:14470720-14470507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:32-247
               
               
               Cow position:chr4:24744559-24744337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-248
               
               
               Cow position:chr4:33612509-33612289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:32-255
               
               
               Cow position:chr4:66112223-66111994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:32-268
               
               
               Cow position:chr4:16602203-16601973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-272
               
               
               Cow position:chr4:68805880-68806105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:32-274
               
               
               Cow position:chr4:5461012-5460765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:32-275
               
               
               Cow position:chr4:62983700-62983465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):55, 114

               
               
               Conread position:32-276
               
               
               Cow position:chr4:12049095-12049344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-277
               
               
               Cow position:chr4:7430173-7430419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:32-284
               
               
               Cow position:chr4:34022737-34022479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-285
               
               
               Cow position:chr4:20327860-20327602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-287
               
               
               Cow position:chr4:22842197-22842456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):151, 65

               
               
               Conread position:32-287
               
               
               Cow position:chr4:61897686-61897425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:32-293
               
               
               Cow position:chr4:17774504-17774235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:32-293
               
               
               Cow position:chr4:53208145-53208408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:32-294
               
               
               Cow position:chr4:45738628-45738359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):61, 30

               
               
               Conread position:32-296
               
               
               Cow position:chr4:33433414-33433138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-296
               
               
               Cow position:chr4:39128383-39128655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:32-297
               
               
               Cow position:chr4:4084598-4084333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-297
               
               
               Cow position:chr4:19744735-19744994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:32-297
               
               
               Cow position:chr4:20157567-20157299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 5

               
               
               Conread position:32-297
               
               
               Cow position:chr4:28839475-28839735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:32-297
               
               
               Cow position:chr4:45644458-45644200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:32-297
               
               
               Cow position:chr4:51727926-51728197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-297
               
               
               Cow position:chr4:53134459-53134722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:32-297
               
               
               Cow position:chr4:54455493-54455223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-298
               
               
               Cow position:chr4:4321152-4320871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 120

               
               
               Conread position:32-298
               
               
               Cow position:chr4:22010211-22009937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:32-298
               
               
               Cow position:chr4:23509442-23509717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):30, 113

               
               
               Conread position:32-298
               
               
               Cow position:chr4:30974190-30974456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):76, 146

               
               
               Conread position:32-298
               
               
               Cow position:chr4:31136601-31136874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 174

               
               
               Conread position:32-298
               
               
               Cow position:chr4:33097126-33096863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:32-298
               
               
               Cow position:chr4:62921012-62920752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:32-298
               
               
               Cow position:chr4:63096223-63095954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:32-300
               
               
               Cow position:chr4:26659154-26659422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):77, 109

               
               
               Conread position:32-301
               
               
               Cow position:chr4:16593933-16594203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:32-301
               
               
               Cow position:chr4:22713641-22713369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:32-301
               
               
               Cow position:chr4:28772217-28771944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:32-301
               
               
               Cow position:chr4:36290478-36290747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):80, 106

               
               
               Conread position:32-302
               
               
               Cow position:chr4:13344396-13344660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr4:13693824-13693552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 241

               
               
               Conread position:32-302
               
               
               Cow position:chr4:48961630-48961364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:32-303
               
               
               Cow position:chr4:48321874-48322159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 242

               
               
               Conread position:32-304
               
               
               Cow position:chr4:36841133-36841391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-305
               
               
               Cow position:chr4:3421477-3421749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:32-306
               
               
               Cow position:chr4:7808436-7808699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:32-306
               
               
               Cow position:chr4:13974119-13973842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:32-308
               
               
               Cow position:chr4:36731044-36731320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-308
               
               
               Cow position:chr4:42922002-42921732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:32-308
               
               
               Cow position:chr4:46591514-46591798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:32-311
               
               
               Cow position:chr4:3251682-3251412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):172, 68

               
               
               Conread position:32-311
               
               
               Cow position:chr4:8947243-8947531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:32-311
               
               
               Cow position:chr4:19322233-19321945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:32-311
               
               
               Cow position:chr4:54190938-54191223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 127

               
               
               Conread position:32-311
               
               
               Cow position:chr4:62772075-62771787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-314
               
               
               Cow position:chr4:35981843-35982134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:32-314
               
               
               Cow position:chr4:37915488-37915202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:32-314
               
               
               Cow position:chr4:62471922-62472215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:32-315
               
               
               Cow position:chr4:21391963-21391676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-320
               
               
               Cow position:chr4:34641876-34641589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 19

               
               
               Conread position:32-320
               
               
               Cow position:chr4:41371090-41370799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:32-322
               
               
               Cow position:chr4:3340801-3341093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):69, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr4:7704471-7704178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):6, 31

               
               
               Conread position:32-322
               
               
               Cow position:chr4:10915987-10915695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-322
               
               
               Cow position:chr4:11872058-11871770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr4:19097139-19097427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:32-322
               
               
               Cow position:chr4:19501234-19500951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):64, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr4:20147036-20147321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:32-322
               
               
               Cow position:chr4:31506182-31505882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 224

               
               
               Conread position:32-322
               
               
               Cow position:chr4:34383497-34383202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:32-322
               
               
               Cow position:chr4:37691463-37691172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-322
               
               
               Cow position:chr4:38935206-38935497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr4:46456211-46455929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:32-322
               
               
               Cow position:chr4:46477085-46476802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):157, 45

               
               
               Conread position:32-322
               
               
               Cow position:chr4:46550238-46550528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):210, 69

               
               
               Conread position:32-322
               
               
               Cow position:chr4:48485854-48486132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr4:59277626-59277338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:32-322
               
               
               Cow position:chr4:65919463-65919754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:33-276
               
               
               Cow position:chr4:27755450-27755206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:33-277
               
               
               Cow position:chr4:48409415-48409170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 125

               
               
               Conread position:33-294
               
               
               Cow position:chr4:65179277-65179031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):168, 65

               
               
               Conread position:33-297
               
               
               Cow position:chr4:47348678-47348945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:33-301
               
               
               Cow position:chr4:66172947-66172668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:33-302
               
               
               Cow position:chr4:9815497-9815223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:33-302
               
               
               Cow position:chr4:16881512-16881238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:33-302
               
               
               Cow position:chr4:40414777-40414504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:33-302
               
               
               Cow position:chr4:51851052-51851336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:33-306
               
               
               Cow position:chr4:26400811-26401082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:33-308
               
               
               Cow position:chr4:54524479-54524212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):246, 76

               
               
               Conread position:33-320
               
               
               Cow position:chr4:15904949-15905240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:33-320
               
               
               Cow position:chr4:36893208-36893502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:33-320
               
               
               Cow position:chr4:53100660-53100942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:34-257
               
               
               Cow position:chr4:21233022-21232795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 117

               
               
               Conread position:34-285
               
               
               Cow position:chr4:3850408-3850658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 111

               
               
               Conread position:34-292
               
               
               Cow position:chr4:34337415-34337157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:34-302
               
               
               Cow position:chr4:4185976-4186242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:34-322
               
               
               Cow position:chr4:65815846-65815560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 30

               
               
               Conread position:35-267
               
               
               Cow position:chr4:46487979-46487752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:35-273
               
               
               Cow position:chr4:25356454-25356224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:35-295
               
               
               Cow position:chr4:33971045-33970779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:35-302
               
               
               Cow position:chr4:20027248-20026979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):30, 113

               
               
               Conread position:35-302
               
               
               Cow position:chr4:44449654-44449389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):5, 107

               
               
               Conread position:35-314
               
               
               Cow position:chr4:52087788-52088063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:35-320
               
               
               Cow position:chr4:43515579-43515860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 73

               
               
               Conread position:35-322
               
               
               Cow position:chr4:6653582-6653860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 62

               
               
               Conread position:36-277
               
               
               Cow position:chr4:3283593-3283348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):72, 59

               
               
               Conread position:36-296
               
               
               Cow position:chr4:3687777-3688047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:36-322
               
               
               Cow position:chr4:19408146-19407854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):67, 115

               
               
               Conread position:36-322
               
               
               Cow position:chr4:54927586-54927294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):58, 103

               
               
               Conread position:37-303
               
               
               Cow position:chr4:85545-85819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):65, 141

               
               
               Conread position:37-311
               
               
               Cow position:chr4:19699961-19700228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:37-314
               
               
               Cow position:chr4:63965134-63964855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:37-322
               
               
               Cow position:chr4:8413264-8412973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:37-322
               
               
               Cow position:chr4:37313025-37313307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:38-298
               
               
               Cow position:chr4:19435115-19435375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:38-302
               
               
               Cow position:chr4:24810585-24810329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:39-272
               
               
               Cow position:chr4:20184570-20184795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:39-298
               
               
               Cow position:chr4:68387648-68387912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:39-308
               
               
               Cow position:chr4:48396937-48396666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:39-316
               
               
               Cow position:chr4:16762870-16762585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:41-306
               
               
               Cow position:chr4:37732629-37732355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:42-322
               
               
               Cow position:chr4:64192331-64192044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:43-239
               
               
               Cow position:chr4:39231655-39231460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:44-228
               
               
               Cow position:chr4:48165486-48165308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:44-322
               
               
               Cow position:chr4:21874036-21874314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:44-322
               
               
               Cow position:chr4:25537407-25537686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:45-263
               
               
               Cow position:chr4:16799325-16799101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:46-247
               
               
               Cow position:chr4:13771525-13771332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:47-272
               
               
               Cow position:chr4:38952417-38952647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:49-287
               
               
               Cow position:chr4:24481797-24481564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:51-298
               
               
               Cow position:chr4:4319278-4319031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):213, 57

               
               
               Conread position:51-302
               
               
               Cow position:chr4:52832149-52831891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:54-299
               
               
               Cow position:chr4:1419094-1419347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:54-318
               
               
               Cow position:chr4:47280010-47280267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:55-276
               
               
               Cow position:chr4:39609606-39609815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:57-313
               
               
               Cow position:chr4:14500378-14500109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:66-287
               
               
               Cow position:chr4:38157207-38156979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:66-322
               
               
               Cow position:chr4:4085237-4084973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:67-301
               
               
               Cow position:chr4:213904-214138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:68-310
               
               
               Cow position:chr4:10851549-10851319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:69-322
               
               
               Cow position:chr4:39458526-39458796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 179

               
               
               Conread position:81-311
               
               
               Cow position:chr4:1775-2004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:85-294
               
               
               Cow position:chr4:34503201-34503412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:86-302
               
               
               Cow position:chr4:44903194-44903417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 131

               
               
               Conread position:89-301
               
               
               Cow position:chr4:19323886-19324097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:90-304
               
               
               Cow position:chr4:69290823-69290617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:91-311
               
               
               Cow position:chr4:20142995-20142779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:92-251
               
               
               Cow position:chr4:19493470-19493628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:92-308
               
               
               Cow position:chr4:9116-8904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):187, 41

               
               
               Conread position:93-320
               
               
               Cow position:chr4:45775420-45775196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:93-322
               
               
               Cow position:chr4:45705964-45706182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-298
               
               
               Cow position:chr4:45626703-45626508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-306
               
               
               Cow position:chr4:37675535-37675742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:94-306
               
               
               Cow position:chr4:64657376-64657175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:94-308
               
               
               Cow position:chr4:17084421-17084207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 43

               
               
               Conread position:94-308
               
               
               Cow position:chr4:65265391-65265174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 53

               
               
               Conread position:94-311
               
               
               Cow position:chr4:19098385-19098605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:94-314
               
               
               Cow position:chr4:32693704-32693924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:94-314
               
               
               Cow position:chr4:46566554-46566334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:94-321
               
               
               Cow position:chr4:19102965-19102741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:94-322
               
               
               Cow position:chr4:12901637-12901414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr4:13222263-13222041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 47

               
               
               Conread position:95-271
               
               
               Cow position:chr4:13991034-13990866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:95-277
               
               
               Cow position:chr4:20505161-20504988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:95-320
               
               
               Cow position:chr4:33181455-33181682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 199

               
               
               Conread position:96-300
               
               
               Cow position:chr4:54541719-54541515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):196, 44

               
               
               Conread position:99-322
               
               
               Cow position:chr4:45636091-45636317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):182, 35

               
               
               Conread position:101-313
               
               
               Cow position:chr4:34562304-34562516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 44

               
               
               Conread position:101-314
               
               
               Cow position:chr4:59002207-59002002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):191, 30

               
               
               Conread position:102-322
               
               
               Cow position:chr4:68456991-68456778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):173, 38

               
               
               Conread position:104-297
               
               
               Cow position:chr4:48422805-48422995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):184, 29

               
               
               Conread position:104-297
               
               
               Cow position:chr4:61478531-61478722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:104-306
               
               
               Cow position:chr4:19199361-19199159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-309
               
               
               Cow position:chr4:60719029-60719233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:104-312
               
               
               Cow position:chr4:61235273-61235070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):171, 11

               
               
               Conread position:104-322
               
               
               Cow position:chr4:8182710-8182498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:105-294
               
               
               Cow position:chr4:34509769-34509956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:106-282
               
               
               Cow position:chr4:66136673-66136504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:106-294
               
               
               Cow position:chr4:54921156-54920972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:106-297
               
               
               Cow position:chr4:19430292-19430486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:106-311
               
               
               Cow position:chr4:11380216-11380412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:106-322
               
               
               Cow position:chr4:26830634-26830854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:106-322
               
               
               Cow position:chr4:45583187-45582977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):168, 35

               
               
               Conread position:107-277
               
               
               Cow position:chr4:36517553-36517384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:107-322
               
               
               Cow position:chr4:49800626-49800832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:109-322
               
               
               Cow position:chr4:26012331-26012548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:113-295
               
               
               Cow position:chr4:28701293-28701475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:113-298
               
               
               Cow position:chr4:17851314-17851133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:113-311
               
               
               Cow position:chr4:39984333-39984537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:115-314
               
               
               Cow position:chr4:65131514-65131318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:118-311
               
               
               Cow position:chr4:49826194-49826387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):161, 15

               
               
               Conread position:120-322
               
               
               Cow position:chr4:46435268-46435470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):171, 26

               
               
               Conread position:123-320
               
               
               Cow position:chr4:65753306-65753100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:124-310
               
               
               Cow position:chr4:35638958-35638771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 176

               
               
               Conread position:124-322
               
               
               Cow position:chr4:19431748-19431553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:125-309
               
               
               Cow position:chr4:51920494-51920675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:128-302
               
               
               Cow position:chr4:3268410-3268238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):160, 9

               
               
               Conread position:130-299
               
               
               Cow position:chr4:60141563-60141401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:131-320
               
               
               Cow position:chr4:18951927-18952111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:132-302
               
               
               Cow position:chr4:36744534-36744700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:133-321
               
               
               Cow position:chr4:38350243-38350056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:134-302
               
               
               Cow position:chr4:18099106-18098937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:134-322
               
               
               Cow position:chr4:60506232-60506415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:135-278
               
               
               Cow position:chr4:42176517-42176374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-303
               
               
               Cow position:chr4:42232065-42231899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:137-297
               
               
               Cow position:chr4:59625635-59625791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:142-301
               
               
               Cow position:chr4:44854326-44854168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr4:48381345-48381526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):131, 67

               
               
               Conread position:143-322
               
               
               Cow position:chr4:10558501-10558673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:145-272
               
               
               Cow position:chr4:56336634-56336759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:145-281
               
               
               Cow position:chr4:16221910-16221774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-297
               
               
               Cow position:chr4:34653902-34653750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):145, 121

               
               
               Conread position:145-300
               
               
               Cow position:chr4:5727811-5727959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:145-302
               
               
               Cow position:chr4:38210008-38209851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-308
               
               
               Cow position:chr4:10472156-10472321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:145-308
               
               
               Cow position:chr4:12135960-12135795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr4:23655941-23656114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):153, 7

               
               
               Conread position:146-307
               
               
               Cow position:chr4:46404936-46404779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 83

               
               
               Conread position:146-310
               
               
               Cow position:chr4:60443074-60442913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:146-315
               
               
               Cow position:chr4:68590745-68590908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:146-316
               
               
               Cow position:chr4:12441863-12442032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:146-316
               
               
               Cow position:chr4:13241593-13241762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:147-302
               
               
               Cow position:chr4:386423-386270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):149, 63

               
               
               Conread position:152-298
               
               
               Cow position:chr4:26901301-26901447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-302
               
               
               Cow position:chr4:65173076-65173226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-308
               
               
               Cow position:chr4:58305931-58305777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:152-314
               
               
               Cow position:chr4:19333360-19333522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:153-299
               
               
               Cow position:chr4:21506981-21506837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:154-292
               
               
               Cow position:chr4:4295562-4295700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 111

               
               
               Conread position:154-298
               
               
               Cow position:chr4:34983520-34983379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:154-306
               
               
               Cow position:chr4:19539261-19539109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:156-301
               
               
               Cow position:chr4:33838822-33838678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):117, 53

               
               
               Conread position:156-302
               
               
               Cow position:chr4:69305604-69305752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:158-287
               
               
               Cow position:chr4:43916268-43916396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:158-322
               
               
               Cow position:chr4:27699012-27699176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):151, 21

               
               
               Conread position:162-322
               
               
               Cow position:chr4:29318092-29317930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:166-297
               
               
               Cow position:chr4:39007495-39007623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:166-314
               
               
               Cow position:chr4:41907594-41907446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:166-322
               
               
               Cow position:chr4:13995375-13995524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:167-302
               
               
               Cow position:chr4:60527169-60527306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 125

               
               
               Conread position:169-310
               
               
               Cow position:chr4:32272982-32272842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:173-321
               
               
               Cow position:chr4:54650490-54650341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:174-311
               
               
               Cow position:chr4:2593844-2593977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:175-302
               
               
               Cow position:chr4:32601834-32601958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:175-314
               
               
               Cow position:chr4:37991589-37991725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:177-301
               
               
               Cow position:chr4:19122871-19122997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:178-322
               
               
               Cow position:chr4:30845371-30845521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:178-322
               
               
               Cow position:chr4:61887636-61887776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:180-302
               
               
               Cow position:chr4:51083336-51083217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:182-320
               
               
               Cow position:chr4:46761611-46761753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:183-322
               
               
               Cow position:chr4:39010054-39010190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:185-302
               
               
               Cow position:chr4:47048124-47048241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:185-314
               
               
               Cow position:chr4:479783-479657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:186-295
               
               
               Cow position:chr4:3519429-3519538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:186-321
               
               
               Cow position:chr4:50494779-50494914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:186-322
               
               
               Cow position:chr4:5132341-5132482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:187-314
               
               
               Cow position:chr4:28854263-28854139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:194-302
               
               
               Cow position:chr4:66892043-66891935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:195-322
               
               
               Cow position:chr4:62794348-62794220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 106

               
               
               Conread position:198-314
               
               
               Cow position:chr4:34919250-34919138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:200-302
               
               
               Cow position:chr4:48321500-48321400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:200-319
               
               
               Cow position:chr4:19580733-19580615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:203-322
               
               
               Cow position:chr4:20276730-20276850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 115

               
               
               Conread position:205-311
               
               
               Cow position:chr4:12270044-12269935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:210-314
               
               
               Cow position:chr4:12713995-12713891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:210-314
               
               
               Cow position:chr4:61524464-61524567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1-266
               
               
               Cow position:chr5:58793761-58793486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:1-302
               
               
               Cow position:chr5:21617314-21617614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:1-306
               
               
               Cow position:chr5:6504030-6503720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 148

               
               
               Conread position:1-306
               
               
               Cow position:chr5:26094316-26094005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:4-301
               
               
               Cow position:chr5:37645930-37646237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:4-302
               
               
               Cow position:chr5:43929882-43929579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:6-253
               
               
               Cow position:chr5:31918510-31918750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 6

               
               
               Conread position:6-275
               
               
               Cow position:chr5:39874980-39875254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 143

               
               
               Conread position:6-282
               
               
               Cow position:chr5:18898838-18899110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 26

               
               
               Conread position:6-282
               
               
               Cow position:chr5:27102933-27102657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:6-291
               
               
               Cow position:chr5:15363756-15364028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):125, 6

               
               
               Conread position:6-302
               
               
               Cow position:chr5:56070718-56071017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-314
               
               
               Cow position:chr5:30276559-30276857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 6

               
               
               Conread position:6-320
               
               
               Cow position:chr5:29827904-29828217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:6-322
               
               
               Cow position:chr5:25495495-25495179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:6-322
               
               
               Cow position:chr5:26467485-26467799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 6

               
               
               Conread position:8-297
               
               
               Cow position:chr5:67243789-67244068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 5

               
               
               Conread position:8-302
               
               
               Cow position:chr5:45845832-45845531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:8-302
               
               
               Cow position:chr5:64176257-64175971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:9-256
               
               
               Cow position:chr5:31481008-31481259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:9-292
               
               
               Cow position:chr5:69731371-69731647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:9-297
               
               
               Cow position:chr5:45574479-45574772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:9-317
               
               
               Cow position:chr5:50533529-50533216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:10-277
               
               
               Cow position:chr5:6286568-6286301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:10-305
               
               
               Cow position:chr5:35684799-35685095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:10-305
               
               
               Cow position:chr5:60715496-60715206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:10-311
               
               
               Cow position:chr5:34300777-34301082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):97, 132

               
               
               Conread position:10-311
               
               
               Cow position:chr5:43992179-43992490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 147

               
               
               Conread position:10-314
               
               
               Cow position:chr5:9894268-9893953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:10-314
               
               
               Cow position:chr5:18288994-18289289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:10-315
               
               
               Cow position:chr5:4280322-4280616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 50

               
               
               Conread position:10-315
               
               
               Cow position:chr5:55955770-55956082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:10-316
               
               
               Cow position:chr5:72564620-72564935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:11-253
               
               
               Cow position:chr5:40039907-40039657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:11-272
               
               
               Cow position:chr5:64139428-64139687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):136, 97

               
               
               Conread position:11-287
               
               
               Cow position:chr5:6528544-6528827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:11-311
               
               
               Cow position:chr5:4032131-4031820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:11-322
               
               
               Cow position:chr5:67932601-67932295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:19-296
               
               
               Cow position:chr5:6572625-6572894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:19-314
               
               
               Cow position:chr5:66366388-66366680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:20-322
               
               
               Cow position:chr5:72895559-72895857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:23-308
               
               
               Cow position:chr5:27306194-27306467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):275, 58

               
               
               Conread position:24-311
               
               
               Cow position:chr5:26477137-26476852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:27-302
               
               
               Cow position:chr5:47696564-47696293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 174

               
               
               Conread position:27-311
               
               
               Cow position:chr5:46509988-46509698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:27-312
               
               
               Cow position:chr5:9090142-9089859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 223

               
               
               Conread position:27-314
               
               
               Cow position:chr5:44796852-44796564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:27-314
               
               
               Cow position:chr5:57074456-57074161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:28-290
               
               
               Cow position:chr5:22242894-22242620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:28-304
               
               
               Cow position:chr5:53710815-53710528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:28-313
               
               
               Cow position:chr5:14921050-14920759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:28-322
               
               
               Cow position:chr5:20127935-20128225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:29-219
               
               
               Cow position:chr5:6670314-6670119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:29-276
               
               
               Cow position:chr5:52000102-52000349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:29-282
               
               
               Cow position:chr5:6045171-6045433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:29-282
               
               
               Cow position:chr5:22643338-22643095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:29-287
               
               
               Cow position:chr5:16214567-16214829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:29-290
               
               
               Cow position:chr5:62142550-62142821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:29-299
               
               
               Cow position:chr5:8821128-8820861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 109

               
               
               Conread position:29-302
               
               
               Cow position:chr5:20779506-20779240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):259, 60

               
               
               Conread position:29-302
               
               
               Cow position:chr5:44752431-44752150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:29-303
               
               
               Cow position:chr5:14314405-14314684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:29-314
               
               
               Cow position:chr5:55176770-55177052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:29-321
               
               
               Cow position:chr5:53835594-53835891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:30-191
               
               
               Cow position:chr5:27015565-27015726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:30-271
               
               
               Cow position:chr5:31640312-31640551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:31-277
               
               
               Cow position:chr5:27172098-27171861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:31-292
               
               
               Cow position:chr5:15722184-15721925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):248, 77

               
               
               Conread position:32-201
               
               
               Cow position:chr5:3627270-3627096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:32-225
               
               
               Cow position:chr5:50799423-50799614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-227
               
               
               Cow position:chr5:63185367-63185172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):65, 130

               
               
               Conread position:32-228
               
               
               Cow position:chr5:31144904-31144704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:32-231
               
               
               Cow position:chr5:34638767-34638970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:32-257
               
               
               Cow position:chr5:46425968-46425743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):96, 111

               
               
               Conread position:32-263
               
               
               Cow position:chr5:20407784-20407560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):115, 76

               
               
               Conread position:32-263
               
               
               Cow position:chr5:52645196-52644962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:32-264
               
               
               Cow position:chr5:32696937-32696704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:32-271
               
               
               Cow position:chr5:19813332-19813094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:32-271
               
               
               Cow position:chr5:66257522-66257762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:32-276
               
               
               Cow position:chr5:56524058-56524305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-281
               
               
               Cow position:chr5:34624855-34625096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:32-281
               
               
               Cow position:chr5:57935226-57934972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:32-282
               
               
               Cow position:chr5:62172299-62172549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:32-283
               
               
               Cow position:chr5:35826486-35826741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:32-284
               
               
               Cow position:chr5:57101893-57101642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:32-286
               
               
               Cow position:chr5:14629930-14629664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:32-286
               
               
               Cow position:chr5:27419839-27419587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 53

               
               
               Conread position:32-287
               
               
               Cow position:chr5:5257409-5257146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:32-287
               
               
               Cow position:chr5:29771401-29771670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:32-288
               
               
               Cow position:chr5:48009966-48009716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-288
               
               
               Cow position:chr5:74580679-74580932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:32-290
               
               
               Cow position:chr5:57736993-57737244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:32-291
               
               
               Cow position:chr5:33537773-33538020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):209, 33

               
               
               Conread position:32-293
               
               
               Cow position:chr5:26377784-26377520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:32-294
               
               
               Cow position:chr5:28224335-28224601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):32, 204

               
               
               Conread position:32-295
               
               
               Cow position:chr5:16893889-16893620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:32-295
               
               
               Cow position:chr5:28302857-28302593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:32-295
               
               
               Cow position:chr5:39258406-39258656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:32-295
               
               
               Cow position:chr5:44446985-44446715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-296
               
               
               Cow position:chr5:3582458-3582710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:32-296
               
               
               Cow position:chr5:56014617-56014881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:32-296
               
               
               Cow position:chr5:56877371-56877633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:32-297
               
               
               Cow position:chr5:25231121-25230865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:32-297
               
               
               Cow position:chr5:30302776-30303041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:32-297
               
               
               Cow position:chr5:40109382-40109644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:32-297
               
               
               Cow position:chr5:41713185-41713450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:32-297
               
               
               Cow position:chr5:45273618-45273350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:32-298
               
               
               Cow position:chr5:34561895-34562171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:32-298
               
               
               Cow position:chr5:54311215-54311489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:32-298
               
               
               Cow position:chr5:63865678-63865957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 120

               
               
               Conread position:32-300
               
               
               Cow position:chr5:61725856-61726118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:32-300
               
               
               Cow position:chr5:65967845-65967576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:32-301
               
               
               Cow position:chr5:3771724-3772002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:32-301
               
               
               Cow position:chr5:12322918-12322651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:32-301
               
               
               Cow position:chr5:30844996-30845266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-301
               
               
               Cow position:chr5:37646663-37646388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:32-301
               
               
               Cow position:chr5:44994155-44993893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):68, 114

               
               
               Conread position:32-301
               
               
               Cow position:chr5:50599939-50600204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):52, 58

               
               
               Conread position:32-301
               
               
               Cow position:chr5:70951993-70951734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-302
               
               
               Cow position:chr5:991349-991633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-302
               
               
               Cow position:chr5:12673579-12673321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:32-302
               
               
               Cow position:chr5:38833006-38833277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:32-302
               
               
               Cow position:chr5:45397461-45397726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:32-302
               
               
               Cow position:chr5:69337712-69337977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:32-303
               
               
               Cow position:chr5:5111190-5110911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:32-304
               
               
               Cow position:chr5:71494700-71494980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:32-305
               
               
               Cow position:chr5:65941367-65941091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:32-306
               
               
               Cow position:chr5:16206272-16205994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-306
               
               
               Cow position:chr5:37808793-37808503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 283

               
               
               Conread position:32-306
               
               
               Cow position:chr5:50821665-50821946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:32-306
               
               
               Cow position:chr5:66338962-66339236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:32-308
               
               
               Cow position:chr5:63987568-63987284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:32-309
               
               
               Cow position:chr5:7755679-7755406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):261, 118

               
               
               Conread position:32-311
               
               
               Cow position:chr5:4166545-4166806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr5:30950033-30949751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-311
               
               
               Cow position:chr5:41546006-41545727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:32-311
               
               
               Cow position:chr5:54060159-54060442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:32-311
               
               
               Cow position:chr5:56317181-56317457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:32-311
               
               
               Cow position:chr5:57626689-57626959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:32-312
               
               
               Cow position:chr5:49440989-49440706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:32-313
               
               
               Cow position:chr5:65136167-65136429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:32-314
               
               
               Cow position:chr5:21828749-21829038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-314
               
               
               Cow position:chr5:50943267-50942991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:32-314
               
               
               Cow position:chr5:51053765-51053477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 135

               
               
               Conread position:32-314
               
               
               Cow position:chr5:69461217-69461506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 110

               
               
               Conread position:32-316
               
               
               Cow position:chr5:43457633-43457358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):195, 81

               
               
               Conread position:32-322
               
               
               Cow position:chr5:11229786-11229499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-322
               
               
               Cow position:chr5:17087142-17086849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:32-322
               
               
               Cow position:chr5:19278817-19278532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):158, 76

               
               
               Conread position:32-322
               
               
               Cow position:chr5:22666976-22667241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr5:24996340-24996048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-322
               
               
               Cow position:chr5:32339081-32338787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:32-322
               
               
               Cow position:chr5:35247227-35246937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:32-322
               
               
               Cow position:chr5:35969425-35969711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:32-322
               
               
               Cow position:chr5:41010110-41009839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:32-322
               
               
               Cow position:chr5:46512880-46512595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-322
               
               
               Cow position:chr5:53855577-53855893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:32-322
               
               
               Cow position:chr5:64823428-64823140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 186

               
               
               Conread position:32-322
               
               
               Cow position:chr5:65752739-65753030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:32-322
               
               
               Cow position:chr5:65776499-65776205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:33-268
               
               
               Cow position:chr5:67540319-67540078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:33-276
               
               
               Cow position:chr5:65588587-65588830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:33-297
               
               
               Cow position:chr5:26990276-26990540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:33-298
               
               
               Cow position:chr5:42050435-42050706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:33-301
               
               
               Cow position:chr5:7044823-7044546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:33-308
               
               
               Cow position:chr5:4220868-4221140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 89

               
               
               Conread position:33-308
               
               
               Cow position:chr5:23168941-23168663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:33-311
               
               
               Cow position:chr5:58855987-58856274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:33-314
               
               
               Cow position:chr5:56028643-56028374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:33-319
               
               
               Cow position:chr5:55966995-55966705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:33-320
               
               
               Cow position:chr5:64027124-64026846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:33-322
               
               
               Cow position:chr5:25035359-25035083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:33-322
               
               
               Cow position:chr5:68718760-68719039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:34-277
               
               
               Cow position:chr5:29903637-29903391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:34-277
               
               
               Cow position:chr5:45803948-45804192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:34-277
               
               
               Cow position:chr5:72951724-72951976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 121

               
               
               Conread position:34-286
               
               
               Cow position:chr5:16025572-16025327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:34-286
               
               
               Cow position:chr5:20783509-20783763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:34-297
               
               
               Cow position:chr5:57575654-57575925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:34-299
               
               
               Cow position:chr5:74643786-74643524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:34-304
               
               
               Cow position:chr5:30253626-30253898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:34-310
               
               
               Cow position:chr5:64592207-64591930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:34-311
               
               
               Cow position:chr5:44726441-44726169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:34-314
               
               
               Cow position:chr5:47601704-47601981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:34-322
               
               
               Cow position:chr5:30629273-30628982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:34-322
               
               
               Cow position:chr5:55942511-55942206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 271

               
               
               Conread position:35-275
               
               
               Cow position:chr5:15598347-15598108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:35-281
               
               
               Cow position:chr5:35763161-35763397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:35-299
               
               
               Cow position:chr5:7193317-7193569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-301
               
               
               Cow position:chr5:26262786-26262525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:35-301
               
               
               Cow position:chr5:41164974-41165242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:35-302
               
               
               Cow position:chr5:11668300-11668028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:35-302
               
               
               Cow position:chr5:49474659-49474387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:35-305
               
               
               Cow position:chr5:29353242-29352968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 119

               
               
               Conread position:35-307
               
               
               Cow position:chr5:44054148-44053893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):244, 11

               
               
               Conread position:35-322
               
               
               Cow position:chr5:35208152-35208434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:35-322
               
               
               Cow position:chr5:43858546-43858247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:36-277
               
               
               Cow position:chr5:15426416-15426670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):72, 154

               
               
               Conread position:36-306
               
               
               Cow position:chr5:44028414-44028146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:36-311
               
               
               Cow position:chr5:4710258-4709986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:36-311
               
               
               Cow position:chr5:60599298-60599039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:36-312
               
               
               Cow position:chr5:13717684-13717405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:37-277
               
               
               Cow position:chr5:63992275-63992040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:37-302
               
               
               Cow position:chr5:60016055-60016323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:37-309
               
               
               Cow position:chr5:7697893-7698168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:37-311
               
               
               Cow position:chr5:58446691-58446974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:37-315
               
               
               Cow position:chr5:42670968-42670699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:37-322
               
               
               Cow position:chr5:39447642-39447354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:38-312
               
               
               Cow position:chr5:20422295-20422027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:39-311
               
               
               Cow position:chr5:23678814-23678537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:39-314
               
               
               Cow position:chr5:60183691-60183971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:42-265
               
               
               Cow position:chr5:56635793-56636015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:42-297
               
               
               Cow position:chr5:12434428-12434695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:42-308
               
               
               Cow position:chr5:34887302-34887028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:42-322
               
               
               Cow position:chr5:36868632-36868908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:43-282
               
               
               Cow position:chr5:74015834-74016077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:43-295
               
               
               Cow position:chr5:64758878-64758615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:44-296
               
               
               Cow position:chr5:35125949-35126206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:44-298
               
               
               Cow position:chr5:62378686-62378933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:45-295
               
               
               Cow position:chr5:54375611-54375352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:45-322
               
               
               Cow position:chr5:12557396-12557116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:46-306
               
               
               Cow position:chr5:55232898-55232652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):188, 58

               
               
               Conread position:46-314
               
               
               Cow position:chr5:36039107-36038833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:47-305
               
               
               Cow position:chr5:64523969-64523704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:50-312
               
               
               Cow position:chr5:55019194-55019458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:52-322
               
               
               Cow position:chr5:30232802-30233081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:57-281
               
               
               Cow position:chr5:35976429-35976646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:57-322
               
               
               Cow position:chr5:5855776-5856031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:62-322
               
               
               Cow position:chr5:43402813-43403080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 212

               
               
               Conread position:67-302
               
               
               Cow position:chr5:17555113-17554876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:67-306
               
               
               Cow position:chr5:70270783-70271026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 217

               
               
               Conread position:67-311
               
               
               Cow position:chr5:32394519-32394767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:74-292
               
               
               Cow position:chr5:46322866-46322656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 72

               
               
               Conread position:80-322
               
               
               Cow position:chr5:63627588-63627364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:85-301
               
               
               Cow position:chr5:6439091-6438867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 34

               
               
               Conread position:85-302
               
               
               Cow position:chr5:29912361-29912578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:90-320
               
               
               Cow position:chr5:49342104-49341866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:93-311
               
               
               Cow position:chr5:41981322-41981534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:94-277
               
               
               Cow position:chr5:1461040-1461221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:94-298
               
               
               Cow position:chr5:458444-458641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-298
               
               
               Cow position:chr5:67212309-67212513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:94-299
               
               
               Cow position:chr5:67118371-67118574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr5:41294034-41294237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:94-307
               
               
               Cow position:chr5:37190142-37189933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):179, 36

               
               
               Conread position:94-311
               
               
               Cow position:chr5:24136666-24136880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:94-311
               
               
               Cow position:chr5:59873138-59872916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 214

               
               
               Conread position:94-311
               
               
               Cow position:chr5:63427054-63426836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:94-314
               
               
               Cow position:chr5:19752258-19752472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:94-314
               
               
               Cow position:chr5:40241995-40242211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:94-314
               
               
               Cow position:chr5:42845644-42845422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:94-322
               
               
               Cow position:chr5:59627021-59626801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:95-248
               
               
               Cow position:chr5:63192788-63192638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:95-305
               
               
               Cow position:chr5:56339066-56338861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:96-322
               
               
               Cow position:chr5:49501870-49501647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:96-322
               
               
               Cow position:chr5:52001666-52001450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:101-275
               
               
               Cow position:chr5:61102674-61102846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:101-322
               
               
               Cow position:chr5:20288304-20288087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:102-277
               
               
               Cow position:chr5:63150207-63150037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:103-322
               
               
               Cow position:chr5:66466280-66466485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:104-274
               
               
               Cow position:chr5:26150458-26150292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:104-302
               
               
               Cow position:chr5:69099681-69099878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):181, 29

               
               
               Conread position:104-306
               
               
               Cow position:chr5:66551936-66551736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):103, 33

               
               
               Conread position:104-308
               
               
               Cow position:chr5:52083299-52083506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:104-311
               
               
               Cow position:chr5:56211864-56212072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):101, 92

               
               
               Conread position:104-322
               
               
               Cow position:chr5:17602238-17602034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr5:43408396-43408169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):146, 29

               
               
               Conread position:105-295
               
               
               Cow position:chr5:71724264-71724449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:105-301
               
               
               Cow position:chr5:57101562-57101368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:106-277
               
               
               Cow position:chr5:40237178-40237343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:106-288
               
               
               Cow position:chr5:56153579-56153761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:106-296
               
               
               Cow position:chr5:57686776-57686586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:106-297
               
               
               Cow position:chr5:55796000-55795812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:106-306
               
               
               Cow position:chr5:72006528-72006328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):173, 39

               
               
               Conread position:106-308
               
               
               Cow position:chr5:35982776-35982573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 27

               
               
               Conread position:106-310
               
               
               Cow position:chr5:22795178-22795377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:106-314
               
               
               Cow position:chr5:50101413-50101207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 36

               
               
               Conread position:106-322
               
               
               Cow position:chr5:63234861-63234652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):175, 31

               
               
               Conread position:107-285
               
               
               Cow position:chr5:56517068-56517244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:107-311
               
               
               Cow position:chr5:45420168-45419969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):170, 30

               
               
               Conread position:108-312
               
               
               Cow position:chr5:49685303-49685105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):177, 34

               
               
               Conread position:108-322
               
               
               Cow position:chr5:33273657-33273868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:113-312
               
               
               Cow position:chr5:52108295-52108099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:114-322
               
               
               Cow position:chr5:8736317-8736106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:116-305
               
               
               Cow position:chr5:61875517-61875697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:116-311
               
               
               Cow position:chr5:57230365-57230173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:116-314
               
               
               Cow position:chr5:26549167-26548972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:119-322
               
               
               Cow position:chr5:45187142-45186945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:124-304
               
               
               Cow position:chr5:58555118-58555296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:130-297
               
               
               Cow position:chr5:56334525-56334360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:133-277
               
               
               Cow position:chr5:60188978-60189125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:133-281
               
               
               Cow position:chr5:45574377-45574230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:134-301
               
               
               Cow position:chr5:46541066-46540900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:134-302
               
               
               Cow position:chr5:9170593-9170429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:134-322
               
               
               Cow position:chr5:39937104-39937288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:135-316
               
               
               Cow position:chr5:39035770-39035947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:136-281
               
               
               Cow position:chr5:4267661-4267806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-305
               
               
               Cow position:chr5:44163377-44163208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:136-314
               
               
               Cow position:chr5:69383246-69383422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:137-294
               
               
               Cow position:chr5:17104845-17104999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:137-302
               
               
               Cow position:chr5:34915061-34914896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:141-315
               
               
               Cow position:chr5:17605139-17604964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:143-276
               
               
               Cow position:chr5:21223322-21223454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:143-311
               
               
               Cow position:chr5:44874191-44874357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:143-311
               
               
               Cow position:chr5:51490247-51490081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):134, 45

               
               
               Conread position:143-313
               
               
               Cow position:chr5:73253409-73253575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:144-288
               
               
               Cow position:chr5:26253174-26253029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:144-322
               
               
               Cow position:chr5:61049331-61049505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 114

               
               
               Conread position:145-297
               
               
               Cow position:chr5:57489945-57489799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:145-308
               
               
               Cow position:chr5:24069390-24069548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:145-311
               
               
               Cow position:chr5:55129343-55129509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-319
               
               
               Cow position:chr5:69636224-69636398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-322
               
               
               Cow position:chr5:65679970-65679802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:146-276
               
               
               Cow position:chr5:45126652-45126783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:147-299
               
               
               Cow position:chr5:9233987-9233832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:147-316
               
               
               Cow position:chr5:59627102-59627273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:148-297
               
               
               Cow position:chr5:40241749-40241894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:149-297
               
               
               Cow position:chr5:50824596-50824743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:152-313
               
               
               Cow position:chr5:51298705-51298545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:153-306
               
               
               Cow position:chr5:2240981-2240830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:154-298
               
               
               Cow position:chr5:60948142-60948285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:155-321
               
               
               Cow position:chr5:3743332-3743496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:156-302
               
               
               Cow position:chr5:38168905-38169052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:156-306
               
               
               Cow position:chr5:35647354-35647504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:160-302
               
               
               Cow position:chr5:26167436-26167579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):114, 128

               
               
               Conread position:160-322
               
               
               Cow position:chr5:5847830-5847667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:163-295
               
               
               Cow position:chr5:75228181-75228051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:163-322
               
               
               Cow position:chr5:54312619-54312772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:166-306
               
               
               Cow position:chr5:56428290-56428155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:166-308
               
               
               Cow position:chr5:54436777-54436916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:166-312
               
               
               Cow position:chr5:55849906-55850048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):135, 43

               
               
               Conread position:167-298
               
               
               Cow position:chr5:60523757-60523886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):126, 42

               
               
               Conread position:167-301
               
               
               Cow position:chr5:35190132-35190266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-322
               
               
               Cow position:chr5:46704277-46704129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:168-294
               
               
               Cow position:chr5:60596108-60595981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:168-298
               
               
               Cow position:chr5:51289568-51289440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):113, 41

               
               
               Conread position:168-313
               
               
               Cow position:chr5:37842256-37842109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:168-322
               
               
               Cow position:chr5:75760251-75760097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 44

               
               
               Conread position:169-302
               
               
               Cow position:chr5:26147615-26147749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:169-311
               
               
               Cow position:chr5:56539275-56539410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:170-302
               
               
               Cow position:chr5:51490577-51490445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-314
               
               
               Cow position:chr5:44734698-44734556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-290
               
               
               Cow position:chr5:29148919-29149033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:173-301
               
               
               Cow position:chr5:16668725-16668853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-314
               
               
               Cow position:chr5:34288222-34288083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:173-322
               
               
               Cow position:chr5:49821456-49821602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:178-302
               
               
               Cow position:chr5:15991606-15991486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:179-311
               
               
               Cow position:chr5:38647674-38647806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:181-299
               
               
               Cow position:chr5:57497388-57497270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:182-306
               
               
               Cow position:chr5:14354113-14354236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:183-297
               
               
               Cow position:chr5:35394395-35394279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:185-278
               
               
               Cow position:chr5:54099261-54099354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:187-305
               
               
               Cow position:chr5:57744880-57744763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:188-311
               
               
               Cow position:chr5:1090776-1090656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:188-322
               
               
               Cow position:chr5:60126733-60126867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:196-297
               
               
               Cow position:chr5:37253480-37253583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:196-302
               
               
               Cow position:chr5:34918397-34918502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 88

               
               
               Conread position:196-311
               
               
               Cow position:chr5:53175207-53175092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-322
               
               
               Cow position:chr5:64843917-64843794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:199-298
               
               
               Cow position:chr5:29599492-29599393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:199-302
               
               
               Cow position:chr5:49207273-49207170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:200-321
               
               
               Cow position:chr5:47841071-47841193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:203-322
               
               
               Cow position:chr5:38079428-38079546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:216-322
               
               
               Cow position:chr5:32975829-32975937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-295
               
               
               Cow position:chr6:63720063-63720365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:1-305
               
               
               Cow position:chr6:54867380-54867691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:1-311
               
               
               Cow position:chr6:8209725-8209428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr6:53932980-53932667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:1-322
               
               
               Cow position:chr6:17313598-17313922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:2-276
               
               
               Cow position:chr6:12337854-12338144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:2-305
               
               
               Cow position:chr6:19264625-19264325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:4-316
               
               
               Cow position:chr6:47574771-47575090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:6-270
               
               
               Cow position:chr6:38614689-38614951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:6-270
               
               
               Cow position:chr6:56843028-56843293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:6-306
               
               
               Cow position:chr6:18447641-18447343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):5, 62

               
               
               Conread position:6-320
               
               
               Cow position:chr6:53519755-53519432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:7-282
               
               
               Cow position:chr6:26728650-26728382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:7-322
               
               
               Cow position:chr6:35842518-35842844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 176

               
               
               Conread position:8-322
               
               
               Cow position:chr6:57546340-57546042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:9-322
               
               
               Cow position:chr6:48112072-48112380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:10-292
               
               
               Cow position:chr6:21110843-21111112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:10-305
               
               
               Cow position:chr6:19996494-19996788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:10-312
               
               
               Cow position:chr6:54991129-54990817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:10-320
               
               
               Cow position:chr6:54365455-54365147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:11-282
               
               
               Cow position:chr6:31564459-31564187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:11-297
               
               
               Cow position:chr6:60118024-60118313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):55, 246

               
               
               Conread position:11-302
               
               
               Cow position:chr6:7128526-7128232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-306
               
               
               Cow position:chr6:10176425-10176127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:15-281
               
               
               Cow position:chr6:57164306-57164575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:18-272
               
               
               Cow position:chr6:21231413-21231665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:18-275
               
               
               Cow position:chr6:4864664-4864403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:19-281
               
               
               Cow position:chr6:8788153-8787887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:19-301
               
               
               Cow position:chr6:37149073-37149359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:19-322
               
               
               Cow position:chr6:47355708-47356012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):91, 215

               
               
               Conread position:21-311
               
               
               Cow position:chr6:66531935-66531642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:23-322
               
               
               Cow position:chr6:15937963-15937668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):85, 126

               
               
               Conread position:23-322
               
               
               Cow position:chr6:59718685-59718995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:25-322
               
               
               Cow position:chr6:47305229-47305526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:26-234
               
               
               Cow position:chr6:20329916-20330111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:26-256
               
               
               Cow position:chr6:12543042-12542805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:26-297
               
               
               Cow position:chr6:23532557-23532820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:26-302
               
               
               Cow position:chr6:38641385-38641664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 125

               
               
               Conread position:27-277
               
               
               Cow position:chr6:29000033-28999794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:27-302
               
               
               Cow position:chr6:44078410-44078685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:27-310
               
               
               Cow position:chr6:7130988-7130701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:27-315
               
               
               Cow position:chr6:120135-120427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:28-302
               
               
               Cow position:chr6:38771179-38771451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):80, 106

               
               
               Conread position:28-311
               
               
               Cow position:chr6:46283108-46282825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 120

               
               
               Conread position:28-322
               
               
               Cow position:chr6:61168667-61168948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):5, 93

               
               
               Conread position:29-227
               
               
               Cow position:chr6:1944618-1944809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:29-276
               
               
               Cow position:chr6:36645282-36645530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:29-277
               
               
               Cow position:chr6:12551164-12551416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:29-281
               
               
               Cow position:chr6:34196256-34195999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:29-289
               
               
               Cow position:chr6:19681629-19681367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:29-298
               
               
               Cow position:chr6:35725989-35726262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:29-309
               
               
               Cow position:chr6:47339458-47339178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:29-311
               
               
               Cow position:chr6:5302515-5302241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:29-311
               
               
               Cow position:chr6:14958451-14958161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:29-318
               
               
               Cow position:chr6:36202722-36203001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 88

               
               
               Conread position:29-322
               
               
               Cow position:chr6:2547140-2547439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 268

               
               
               Conread position:29-322
               
               
               Cow position:chr6:10225745-10225466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 62

               
               
               Conread position:30-299
               
               
               Cow position:chr6:7989517-7989248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:30-301
               
               
               Cow position:chr6:6067795-6067531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:30-322
               
               
               Cow position:chr6:59301886-59301599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:32-195
               
               
               Cow position:chr6:9323059-9323213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:32-222
               
               
               Cow position:chr6:12829326-12829134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:32-224
               
               
               Cow position:chr6:24962046-24962238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:32-251
               
               
               Cow position:chr6:130264-130043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:32-258
               
               
               Cow position:chr6:899393-899166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:32-258
               
               
               Cow position:chr6:61608408-61608639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:32-267
               
               
               Cow position:chr6:31535670-31535433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:32-276
               
               
               Cow position:chr6:32121808-32122053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:32-277
               
               
               Cow position:chr6:7119713-7119473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:32-277
               
               
               Cow position:chr6:17414551-17414299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):57, 112

               
               
               Conread position:32-277
               
               
               Cow position:chr6:49398717-49398474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-277
               
               
               Cow position:chr6:58073945-58074193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:32-277
               
               
               Cow position:chr6:60350398-60350146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):68, 110

               
               
               Conread position:32-278
               
               
               Cow position:chr6:31525949-31526193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:32-278
               
               
               Cow position:chr6:35613517-35613270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:32-284
               
               
               Cow position:chr6:4383383-4383631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):115, 76

               
               
               Conread position:32-287
               
               
               Cow position:chr6:28977138-28976884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 58

               
               
               Conread position:32-294
               
               
               Cow position:chr6:53651940-53652203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):52, 101

               
               
               Conread position:32-295
               
               
               Cow position:chr6:8965990-8966261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:32-295
               
               
               Cow position:chr6:59069727-59069456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):67, 114

               
               
               Conread position:32-296
               
               
               Cow position:chr6:9219170-9219431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:32-296
               
               
               Cow position:chr6:60274109-60273844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:32-297
               
               
               Cow position:chr6:36196111-36196378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:32-297
               
               
               Cow position:chr6:66874248-66874516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:32-298
               
               
               Cow position:chr6:16191566-16191838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 201

               
               
               Conread position:32-298
               
               
               Cow position:chr6:46465720-46465990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-299
               
               
               Cow position:chr6:51463715-51463464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):256, 47

               
               
               Conread position:32-300
               
               
               Cow position:chr6:46860267-46859999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):63, 54

               
               
               Conread position:32-301
               
               
               Cow position:chr6:24468496-24468226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:32-301
               
               
               Cow position:chr6:56849909-56850190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 132

               
               
               Conread position:32-301
               
               
               Cow position:chr6:58370650-58370920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 192

               
               
               Conread position:32-301
               
               
               Cow position:chr6:64431836-64432108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:32-302
               
               
               Cow position:chr6:15305478-15305743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:32-302
               
               
               Cow position:chr6:25615205-25614918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:32-302
               
               
               Cow position:chr6:50577421-50577690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:32-302
               
               
               Cow position:chr6:55282389-55282123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):198, 12

               
               
               Conread position:32-302
               
               
               Cow position:chr6:60739912-60740185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:32-302
               
               
               Cow position:chr6:65870925-65871207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):32, 211

               
               
               Conread position:32-303
               
               
               Cow position:chr6:582374-582099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:32-304
               
               
               Cow position:chr6:11192569-11192300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:32-305
               
               
               Cow position:chr6:10106095-10105807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:32-306
               
               
               Cow position:chr6:5095657-5095367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 124

               
               
               Conread position:32-306
               
               
               Cow position:chr6:59603310-59603035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:32-311
               
               
               Cow position:chr6:13040354-13040621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):63, 111

               
               
               Conread position:32-311
               
               
               Cow position:chr6:21869751-21869469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:32-311
               
               
               Cow position:chr6:35993478-35993763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 121

               
               
               Conread position:32-311
               
               
               Cow position:chr6:58597607-58597326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:32-312
               
               
               Cow position:chr6:17997418-17997138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:32-314
               
               
               Cow position:chr6:23695891-23696183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-314
               
               
               Cow position:chr6:39358446-39358159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:32-314
               
               
               Cow position:chr6:57571374-57571662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:32-315
               
               
               Cow position:chr6:54132714-54132998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:32-316
               
               
               Cow position:chr6:24004440-24004719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):76, 99

               
               
               Conread position:32-321
               
               
               Cow position:chr6:38853757-38853473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:32-322
               
               
               Cow position:chr6:1703715-1703981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr6:4692083-4691781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:32-322
               
               
               Cow position:chr6:5114148-5113863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr6:5609543-5609258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr6:14914348-14914049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):31, 161

               
               
               Conread position:32-322
               
               
               Cow position:chr6:15243153-15243446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 115

               
               
               Conread position:32-322
               
               
               Cow position:chr6:15447307-15447009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:32-322
               
               
               Cow position:chr6:24781662-24781367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:32-322
               
               
               Cow position:chr6:28482916-28483201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:32-322
               
               
               Cow position:chr6:38207594-38207301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:32-322
               
               
               Cow position:chr6:51581356-51581071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:32-322
               
               
               Cow position:chr6:61631712-61631421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-322
               
               
               Cow position:chr6:67950850-67951142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:33-204
               
               
               Cow position:chr6:18961618-18961442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:33-272
               
               
               Cow position:chr6:20098066-20097818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:33-276
               
               
               Cow position:chr6:24031277-24031521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):71, 174

               
               
               Conread position:33-281
               
               
               Cow position:chr6:20196395-20196153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:33-282
               
               
               Cow position:chr6:38218570-38218818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:33-284
               
               
               Cow position:chr6:9452871-9452615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:33-287
               
               
               Cow position:chr6:1429537-1429795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:33-297
               
               
               Cow position:chr6:45690691-45690444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:33-302
               
               
               Cow position:chr6:19446157-19446421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:33-306
               
               
               Cow position:chr6:15242734-15243011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 117

               
               
               Conread position:33-311
               
               
               Cow position:chr6:21234942-21235223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:33-311
               
               
               Cow position:chr6:46571015-46571288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:33-311
               
               
               Cow position:chr6:47799189-47799473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:33-314
               
               
               Cow position:chr6:32287536-32287815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:33-322
               
               
               Cow position:chr6:47519948-47520238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:33-322
               
               
               Cow position:chr6:48281894-48282179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:33-322
               
               
               Cow position:chr6:67214642-67214944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:34-274
               
               
               Cow position:chr6:47640534-47640289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:34-286
               
               
               Cow position:chr6:58590177-58590428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:34-297
               
               
               Cow position:chr6:32867307-32867053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:34-297
               
               
               Cow position:chr6:53024896-53024638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):255, 68

               
               
               Conread position:34-298
               
               
               Cow position:chr6:53460673-53460400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):70, 118

               
               
               Conread position:34-305
               
               
               Cow position:chr6:29484989-29485256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:34-305
               
               
               Cow position:chr6:38640130-38640407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:34-311
               
               
               Cow position:chr6:51968963-51969257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:34-314
               
               
               Cow position:chr6:49421884-49421608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:35-277
               
               
               Cow position:chr6:37634684-37634941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 249

               
               
               Conread position:35-289
               
               
               Cow position:chr6:52901134-52901396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:35-297
               
               
               Cow position:chr6:61524301-61524039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:35-311
               
               
               Cow position:chr6:16764752-16764466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:35-311
               
               
               Cow position:chr6:37783318-37783581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:35-314
               
               
               Cow position:chr6:61269209-61269495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:35-314
               
               
               Cow position:chr6:67187586-67187865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:35-322
               
               
               Cow position:chr6:6965492-6965210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:36-298
               
               
               Cow position:chr6:53841598-53841339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:36-301
               
               
               Cow position:chr6:40032094-40032360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:36-304
               
               
               Cow position:chr6:15300918-15300660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):29, 99

               
               
               Conread position:36-311
               
               
               Cow position:chr6:6343327-6343609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:37-312
               
               
               Cow position:chr6:16423602-16423883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:38-298
               
               
               Cow position:chr6:44194639-44194383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:38-322
               
               
               Cow position:chr6:26915233-26915512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:39-287
               
               
               Cow position:chr6:37462926-37463179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:39-287
               
               
               Cow position:chr6:66375426-66375177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:39-301
               
               
               Cow position:chr6:19292702-19292969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:39-312
               
               
               Cow position:chr6:68376417-68376142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 21

               
               
               Conread position:40-315
               
               
               Cow position:chr6:143463-143193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:42-258
               
               
               Cow position:chr6:23248052-23247839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:42-275
               
               
               Cow position:chr6:50975965-50976192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:42-302
               
               
               Cow position:chr6:13687906-13687644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:43-302
               
               
               Cow position:chr6:52478506-52478239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:44-289
               
               
               Cow position:chr6:10487496-10487743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:44-291
               
               
               Cow position:chr6:35435904-35436153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:45-298
               
               
               Cow position:chr6:35990323-35990067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:46-322
               
               
               Cow position:chr6:37332018-37332306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:47-308
               
               
               Cow position:chr6:6400863-6401129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:52-322
               
               
               Cow position:chr6:65259560-65259296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):75, 49

               
               
               Conread position:56-311
               
               
               Cow position:chr6:23466108-23465853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:59-283
               
               
               Cow position:chr6:59770155-59770376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:60-302
               
               
               Cow position:chr6:22985933-22985682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:64-228
               
               
               Cow position:chr6:36493620-36493444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:66-293
               
               
               Cow position:chr6:29248422-29248639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:66-322
               
               
               Cow position:chr6:67643760-67643505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:67-321
               
               
               Cow position:chr6:9302784-9302530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:68-257
               
               
               Cow position:chr6:15022615-15022421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:69-321
               
               
               Cow position:chr6:49437278-49437527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):212, 29

               
               
               Conread position:88-322
               
               
               Cow position:chr6:60266221-60265984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):189, 42

               
               
               Conread position:89-322
               
               
               Cow position:chr6:60516787-60517022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:90-311
               
               
               Cow position:chr6:19131392-19131610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:92-322
               
               
               Cow position:chr6:48468961-48469195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:93-277
               
               
               Cow position:chr6:32853152-32853333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:94-276
               
               
               Cow position:chr6:7190152-7189974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:94-278
               
               
               Cow position:chr6:32517133-32516963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-299
               
               
               Cow position:chr6:68652386-68652179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:94-301
               
               
               Cow position:chr6:2078853-2078643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr6:31078905-31078696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:94-302
               
               
               Cow position:chr6:60144232-60144027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:94-309
               
               
               Cow position:chr6:3350986-3351208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:94-310
               
               
               Cow position:chr6:18118085-18117871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-310
               
               
               Cow position:chr6:32809243-32809460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:94-311
               
               
               Cow position:chr6:18144160-18144377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):101, 7

               
               
               Conread position:94-314
               
               
               Cow position:chr6:37395441-37395219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 198

               
               
               Conread position:94-321
               
               
               Cow position:chr6:60468204-60468419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):204, 43

               
               
               Conread position:94-322
               
               
               Cow position:chr6:17068682-17068455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):192, 44

               
               
               Conread position:94-322
               
               
               Cow position:chr6:38441143-38441364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):204, 43

               
               
               Conread position:94-322
               
               
               Cow position:chr6:43345476-43345256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr6:68816133-68816355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:96-298
               
               
               Cow position:chr6:35103364-35103161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:96-311
               
               
               Cow position:chr6:55535780-55535572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 46

               
               
               Conread position:96-322
               
               
               Cow position:chr6:5330379-5330598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:96-322
               
               
               Cow position:chr6:43134969-43134751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:100-291
               
               
               Cow position:chr6:68685527-68685713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:101-296
               
               
               Cow position:chr6:62056586-62056779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-302
               
               
               Cow position:chr6:48097628-48097428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:104-228
               
               
               Cow position:chr6:21347319-21347196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-277
               
               
               Cow position:chr6:19259368-19259196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:104-278
               
               
               Cow position:chr6:54083014-54082842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-302
               
               
               Cow position:chr6:50504430-50504627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-311
               
               
               Cow position:chr6:18904076-18903870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:104-314
               
               
               Cow position:chr6:26155128-26155331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr6:36920998-36920791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr6:63065801-63066021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:104-322
               
               
               Cow position:chr6:67451396-67451184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-277
               
               
               Cow position:chr6:47885043-47884884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-293
               
               
               Cow position:chr6:66570416-66570601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:106-295
               
               
               Cow position:chr6:53089986-53090172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:106-302
               
               
               Cow position:chr6:21293518-21293326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:106-311
               
               
               Cow position:chr6:18049045-18048844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):177, 29

               
               
               Conread position:106-314
               
               
               Cow position:chr6:1941859-1941650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:106-316
               
               
               Cow position:chr6:41656065-41655856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:107-276
               
               
               Cow position:chr6:69334332-69334165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):120, 26

               
               
               Conread position:107-304
               
               
               Cow position:chr6:67451667-67451484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:108-297
               
               
               Cow position:chr6:53546016-53546202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):171, 24

               
               
               Conread position:114-309
               
               
               Cow position:chr6:4702838-4702641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):160, 23

               
               
               Conread position:117-320
               
               
               Cow position:chr6:13653340-13653527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:124-311
               
               
               Cow position:chr6:46330917-46331096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:130-322
               
               
               Cow position:chr6:6060572-6060386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:131-297
               
               
               Cow position:chr6:61109789-61109955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):150, 11

               
               
               Conread position:131-301
               
               
               Cow position:chr6:66839198-66839366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):103, 53

               
               
               Conread position:133-302
               
               
               Cow position:chr6:42034773-42034942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:133-302
               
               
               Cow position:chr6:58459723-58459891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):103, 97

               
               
               Conread position:134-295
               
               
               Cow position:chr6:21470427-21470265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:135-306
               
               
               Cow position:chr6:222449-222280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:136-298
               
               
               Cow position:chr6:30023890-30024052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-296
               
               
               Cow position:chr6:12623521-12623676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:137-314
               
               
               Cow position:chr6:67069809-67069628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:137-320
               
               
               Cow position:chr6:58725376-58725557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:138-322
               
               
               Cow position:chr6:1871191-1871013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:138-322
               
               
               Cow position:chr6:12761288-12761465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:143-277
               
               
               Cow position:chr6:37466103-37466240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:143-322
               
               
               Cow position:chr6:61569644-61569822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:145-278
               
               
               Cow position:chr6:57328379-57328247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr6:1002249-1002083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr6:58227386-58227562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:146-277
               
               
               Cow position:chr6:43651767-43651898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-322
               
               
               Cow position:chr6:51530175-51530001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:147-314
               
               
               Cow position:chr6:1866748-1866911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:149-315
               
               
               Cow position:chr6:54471913-54471749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:163-277
               
               
               Cow position:chr6:23938092-23938206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-298
               
               
               Cow position:chr6:16090935-16091069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:166-299
               
               
               Cow position:chr6:51933589-51933717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:168-322
               
               
               Cow position:chr6:3936821-3936971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:169-302
               
               
               Cow position:chr6:36537323-36537191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 61

               
               
               Conread position:169-322
               
               
               Cow position:chr6:21083503-21083357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:172-311
               
               
               Cow position:chr6:28900367-28900506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-295
               
               
               Cow position:chr6:41657309-41657431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-322
               
               
               Cow position:chr6:21350991-21350847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:179-311
               
               
               Cow position:chr6:47676062-47676192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:181-314
               
               
               Cow position:chr6:60186613-60186478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:187-314
               
               
               Cow position:chr6:32006399-32006272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-322
               
               
               Cow position:chr6:36938924-36939058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 96

               
               
               Conread position:194-311
               
               
               Cow position:chr6:1684740-1684857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 74

               
               
               Conread position:199-322
               
               
               Cow position:chr6:154537-154662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 36

               
               
               Conread position:1-254
               
               
               Cow position:chr7:6706163-6706425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 144

               
               
               Conread position:1-299
               
               
               Cow position:chr7:29479392-29479696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-306
               
               
               Cow position:chr7:39939603-39939912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:1-320
               
               
               Cow position:chr7:23636577-23636895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:1-322
               
               
               Cow position:chr7:46051521-46051846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 135

               
               
               Conread position:2-286
               
               
               Cow position:chr7:10122576-10122849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:2-297
               
               
               Cow position:chr7:40189424-40189718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:2-321
               
               
               Cow position:chr7:62793660-62793993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):106, 8

               
               
               Conread position:4-308
               
               
               Cow position:chr7:10512844-10512533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):7, 150

               
               
               Conread position:4-311
               
               
               Cow position:chr7:52383105-52382796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):7, 134

               
               
               Conread position:4-320
               
               
               Cow position:chr7:68170732-68170409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:6-246
               
               
               Cow position:chr7:3773388-3773149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-275
               
               
               Cow position:chr7:38263548-38263819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:6-286
               
               
               Cow position:chr7:49648234-49648514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):5, 104

               
               
               Conread position:6-297
               
               
               Cow position:chr7:18188343-18188061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:6-302
               
               
               Cow position:chr7:20534755-20535046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:6-311
               
               
               Cow position:chr7:32914982-32915297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:6-314
               
               
               Cow position:chr7:11958561-11958254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:6-322
               
               
               Cow position:chr7:33719923-33720225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:6-322
               
               
               Cow position:chr7:62733062-62733381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:7-298
               
               
               Cow position:chr7:4764723-4765013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:7-302
               
               
               Cow position:chr7:49106327-49106029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):70, 142

               
               
               Conread position:7-308
               
               
               Cow position:chr7:5853233-5853527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:8-285
               
               
               Cow position:chr7:40263774-40263502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:8-297
               
               
               Cow position:chr7:40406535-40406819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 5

               
               
               Conread position:9-269
               
               
               Cow position:chr7:23251687-23251426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:9-286
               
               
               Cow position:chr7:39903970-39904251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:9-322
               
               
               Cow position:chr7:42593403-42593078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:10-287
               
               
               Cow position:chr7:50095261-50095545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 123

               
               
               Conread position:10-310
               
               
               Cow position:chr7:26911561-26911261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:10-311
               
               
               Cow position:chr7:15566636-15566936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:10-311
               
               
               Cow position:chr7:45157998-45158299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:10-314
               
               
               Cow position:chr7:37394192-37394485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-321
               
               
               Cow position:chr7:9146518-9146834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:11-254
               
               
               Cow position:chr7:53097469-53097716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:11-282
               
               
               Cow position:chr7:26631935-26631659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:11-282
               
               
               Cow position:chr7:40566950-40567221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):97, 133

               
               
               Conread position:11-301
               
               
               Cow position:chr7:47547284-47547580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:11-314
               
               
               Cow position:chr7:23205753-23205439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):77, 130

               
               
               Conread position:11-322
               
               
               Cow position:chr7:37455199-37455511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:11-322
               
               
               Cow position:chr7:42223070-42222751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:12-313
               
               
               Cow position:chr7:10943666-10943374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:13-312
               
               
               Cow position:chr7:41328158-41327853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:13-322
               
               
               Cow position:chr7:9136718-9137037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 12

               
               
               Conread position:14-257
               
               
               Cow position:chr7:27509596-27509843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 136

               
               
               Conread position:15-286
               
               
               Cow position:chr7:58170623-58170897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:18-291
               
               
               Cow position:chr7:59168158-59168424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:19-311
               
               
               Cow position:chr7:44986536-44986835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 133

               
               
               Conread position:19-316
               
               
               Cow position:chr7:18388516-18388216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:20-276
               
               
               Cow position:chr7:13228690-13228432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:23-302
               
               
               Cow position:chr7:4892756-4893031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:23-317
               
               
               Cow position:chr7:51644550-51644835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:26-295
               
               
               Cow position:chr7:22793242-22793510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:27-229
               
               
               Cow position:chr7:24991174-24991370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):189, 18

               
               
               Conread position:27-246
               
               
               Cow position:chr7:44589956-44589741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:27-276
               
               
               Cow position:chr7:30816392-30816145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 37

               
               
               Conread position:27-281
               
               
               Cow position:chr7:5238175-5237931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:27-295
               
               
               Cow position:chr7:5027259-5027004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:27-296
               
               
               Cow position:chr7:63946688-63946419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:27-298
               
               
               Cow position:chr7:20537257-20537535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):81, 268

               
               
               Conread position:27-314
               
               
               Cow position:chr7:57593331-57593615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:27-322
               
               
               Cow position:chr7:53806924-53806623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:28-282
               
               
               Cow position:chr7:52536361-52536100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 123

               
               
               Conread position:28-297
               
               
               Cow position:chr7:31315209-31315476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:28-310
               
               
               Cow position:chr7:25512228-25511942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:29-281
               
               
               Cow position:chr7:32079350-32079603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:29-288
               
               
               Cow position:chr7:69066594-69066856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:29-297
               
               
               Cow position:chr7:28544072-28544342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:29-297
               
               
               Cow position:chr7:44596803-44596534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 123

               
               
               Conread position:29-302
               
               
               Cow position:chr7:14524376-14524653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:29-306
               
               
               Cow position:chr7:36569746-36570038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 272

               
               
               Conread position:29-308
               
               
               Cow position:chr7:12408339-12408063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):133, 79

               
               
               Conread position:29-311
               
               
               Cow position:chr7:40952965-40952683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:29-311
               
               
               Cow position:chr7:50900791-50900501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:29-314
               
               
               Cow position:chr7:11960313-11960580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:29-322
               
               
               Cow position:chr7:48714748-48715043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:30-282
               
               
               Cow position:chr7:18508633-18508389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:30-288
               
               
               Cow position:chr7:20918454-20918186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:30-311
               
               
               Cow position:chr7:48406599-48406312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:30-322
               
               
               Cow position:chr7:58862990-58862690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):28, 183

               
               
               Conread position:32-201
               
               
               Cow position:chr7:32819715-32819891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:32-223
               
               
               Cow position:chr7:14353890-14353694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-253
               
               
               Cow position:chr7:11854394-11854619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:32-262
               
               
               Cow position:chr7:25496633-25496857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):67, 100

               
               
               Conread position:32-263
               
               
               Cow position:chr7:37142465-37142239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:32-268
               
               
               Cow position:chr7:8272559-8272801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:32-271
               
               
               Cow position:chr7:40121364-40121614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:32-272
               
               
               Cow position:chr7:48243573-48243815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 64

               
               
               Conread position:32-276
               
               
               Cow position:chr7:45927258-45927018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:32-277
               
               
               Cow position:chr7:4452503-4452752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:32-277
               
               
               Cow position:chr7:6058034-6058276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:32-277
               
               
               Cow position:chr7:14174515-14174278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:32-277
               
               
               Cow position:chr7:43908106-43908355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:32-278
               
               
               Cow position:chr7:7506236-7505977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:32-281
               
               
               Cow position:chr7:39451234-39450997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:32-281
               
               
               Cow position:chr7:65122242-65122484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:32-282
               
               
               Cow position:chr7:255914-255666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:32-282
               
               
               Cow position:chr7:8977919-8977671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 159

               
               
               Conread position:32-282
               
               
               Cow position:chr7:24220569-24220821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:32-282
               
               
               Cow position:chr7:39325640-39325879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:32-282
               
               
               Cow position:chr7:50859912-50860160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:32-283
               
               
               Cow position:chr7:36533931-36534177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:32-287
               
               
               Cow position:chr7:15559591-15559845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:32-287
               
               
               Cow position:chr7:59075745-59076008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:32-296
               
               
               Cow position:chr7:53786059-53785811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):191, 52

               
               
               Conread position:32-297
               
               
               Cow position:chr7:11066374-11066645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:32-297
               
               
               Cow position:chr7:39415808-39416080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:32-297
               
               
               Cow position:chr7:42636880-42637140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):249, 76

               
               
               Conread position:32-298
               
               
               Cow position:chr7:5199651-5199383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-298
               
               
               Cow position:chr7:30932076-30931808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-298
               
               
               Cow position:chr7:48667325-48667585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):179, 11

               
               
               Conread position:32-298
               
               
               Cow position:chr7:49417503-49417777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:32-298
               
               
               Cow position:chr7:58362850-58363100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-301
               
               
               Cow position:chr7:3336652-3336386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:32-301
               
               
               Cow position:chr7:17967218-17966948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:32-301
               
               
               Cow position:chr7:28916986-28917263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:32-301
               
               
               Cow position:chr7:34554164-34554425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:32-301
               
               
               Cow position:chr7:35275181-35274909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-301
               
               
               Cow position:chr7:38060530-38060254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:32-301
               
               
               Cow position:chr7:48020320-48020600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-301
               
               
               Cow position:chr7:52784900-52784634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:32-302
               
               
               Cow position:chr7:10044-10321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 160

               
               
               Conread position:32-302
               
               
               Cow position:chr7:14536384-14536108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:32-302
               
               
               Cow position:chr7:15547957-15548204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:32-302
               
               
               Cow position:chr7:15569941-15570211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:32-302
               
               
               Cow position:chr7:31497621-31497883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-302
               
               
               Cow position:chr7:33697855-33698127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-302
               
               
               Cow position:chr7:63749575-63749305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:32-303
               
               
               Cow position:chr7:38696747-38697016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:32-304
               
               
               Cow position:chr7:23646506-23646786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:32-306
               
               
               Cow position:chr7:2579343-2579060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:32-306
               
               
               Cow position:chr7:23568837-23568560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:32-306
               
               
               Cow position:chr7:57259128-57258846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:32-306
               
               
               Cow position:chr7:64364627-64364351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:32-307
               
               
               Cow position:chr7:39167364-39167642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:32-308
               
               
               Cow position:chr7:26485480-26485747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:32-309
               
               
               Cow position:chr7:17816653-17816929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:32-309
               
               
               Cow position:chr7:23679692-23679403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:32-311
               
               
               Cow position:chr7:3256454-3256163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:32-311
               
               
               Cow position:chr7:23936013-23936292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:32-311
               
               
               Cow position:chr7:34422369-34422090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:32-311
               
               
               Cow position:chr7:38082055-38082336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-311
               
               
               Cow position:chr7:40067558-40067842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:32-311
               
               
               Cow position:chr7:41464372-41464648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:32-311
               
               
               Cow position:chr7:45331448-45331722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:32-311
               
               
               Cow position:chr7:51319699-51319991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:32-311
               
               
               Cow position:chr7:58923295-58923580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:32-312
               
               
               Cow position:chr7:14632278-14632549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):247, 18

               
               
               Conread position:32-312
               
               
               Cow position:chr7:49903675-49903952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:32-314
               
               
               Cow position:chr7:27283582-27283861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):259, 76

               
               
               Conread position:32-314
               
               
               Cow position:chr7:32945973-32946252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:32-314
               
               
               Cow position:chr7:43711118-43711398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:32-314
               
               
               Cow position:chr7:46818595-46818312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 110

               
               
               Conread position:32-314
               
               
               Cow position:chr7:48722003-48721719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:32-314
               
               
               Cow position:chr7:50066213-50065931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-314
               
               
               Cow position:chr7:53053502-53053220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:32-317
               
               
               Cow position:chr7:18544476-18544201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:32-318
               
               
               Cow position:chr7:58302040-58301750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-318
               
               
               Cow position:chr7:61790457-61790162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:32-320
               
               
               Cow position:chr7:17713573-17713277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-321
               
               
               Cow position:chr7:26737436-26737156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:32-322
               
               
               Cow position:chr7:15755550-15755255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):76, 263

               
               
               Conread position:32-322
               
               
               Cow position:chr7:21565655-21565382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:32-322
               
               
               Cow position:chr7:32894347-32894053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:32-322
               
               
               Cow position:chr7:34433380-34433093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:32-322
               
               
               Cow position:chr7:47513788-47513498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:32-322
               
               
               Cow position:chr7:49751026-49751315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:32-322
               
               
               Cow position:chr7:54013260-54013564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:32-322
               
               
               Cow position:chr7:55085555-55085846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:33-245
               
               
               Cow position:chr7:2923546-2923764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:33-258
               
               
               Cow position:chr7:19267469-19267241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:33-276
               
               
               Cow position:chr7:35893317-35893563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:33-278
               
               
               Cow position:chr7:53698011-53697758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:33-282
               
               
               Cow position:chr7:54712319-54712575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:33-284
               
               
               Cow position:chr7:13133790-13133548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:33-286
               
               
               Cow position:chr7:9193344-9193080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:33-287
               
               
               Cow position:chr7:20168452-20168712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:33-287
               
               
               Cow position:chr7:62193467-62193723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:33-292
               
               
               Cow position:chr7:4129881-4129617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:33-297
               
               
               Cow position:chr7:29509854-29510109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:33-301
               
               
               Cow position:chr7:56820671-56820413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:33-308
               
               
               Cow position:chr7:41315534-41315257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:33-315
               
               
               Cow position:chr7:29280112-29279833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:33-320
               
               
               Cow position:chr7:11783532-11783239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:33-322
               
               
               Cow position:chr7:36665232-36665514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 105

               
               
               Conread position:34-282
               
               
               Cow position:chr7:42244792-42244552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:34-293
               
               
               Cow position:chr7:9926829-9926567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:34-295
               
               
               Cow position:chr7:29300855-29300601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 50

               
               
               Conread position:34-302
               
               
               Cow position:chr7:33393216-33393482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:34-306
               
               
               Cow position:chr7:28095787-28096047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:34-311
               
               
               Cow position:chr7:55688296-55688013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:34-312
               
               
               Cow position:chr7:42894347-42894632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:34-320
               
               
               Cow position:chr7:25263272-25263555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 113

               
               
               Conread position:34-322
               
               
               Cow position:chr7:41872187-41871916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-207
               
               
               Cow position:chr7:61818036-61817859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:35-300
               
               
               Cow position:chr7:61823952-61823680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:35-301
               
               
               Cow position:chr7:31171049-31170784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:35-301
               
               
               Cow position:chr7:33385829-33386094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:35-302
               
               
               Cow position:chr7:46857057-46856791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:35-311
               
               
               Cow position:chr7:147314-147597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:35-311
               
               
               Cow position:chr7:36278198-36278479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:35-311
               
               
               Cow position:chr7:59843852-59843569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):73, 149

               
               
               Conread position:35-317
               
               
               Cow position:chr7:55694141-55693863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:35-322
               
               
               Cow position:chr7:13593668-13593963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:35-322
               
               
               Cow position:chr7:30276639-30276924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:35-322
               
               
               Cow position:chr7:44454378-44454081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-270
               
               
               Cow position:chr7:44049467-44049230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:36-282
               
               
               Cow position:chr7:6041880-6042125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:36-305
               
               
               Cow position:chr7:27079530-27079803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:36-311
               
               
               Cow position:chr7:1792558-1792260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:36-316
               
               
               Cow position:chr7:34974218-34974496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:37-321
               
               
               Cow position:chr7:47697920-47698203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):58, 98

               
               
               Conread position:38-308
               
               
               Cow position:chr7:31094443-31094167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:38-314
               
               
               Cow position:chr7:36996280-36996544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:39-287
               
               
               Cow position:chr7:53382107-53382353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:41-315
               
               
               Cow position:chr7:32221972-32222250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:42-289
               
               
               Cow position:chr7:37361790-37362036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:42-302
               
               
               Cow position:chr7:40074584-40074858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:42-320
               
               
               Cow position:chr7:50566290-50566010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:42-322
               
               
               Cow position:chr7:4720322-4720040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:43-299
               
               
               Cow position:chr7:33989867-33990123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:43-301
               
               
               Cow position:chr7:15534162-15533903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:43-301
               
               
               Cow position:chr7:43484626-43484357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:43-306
               
               
               Cow position:chr7:63707394-63707142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:44-218
               
               
               Cow position:chr7:47046377-47046545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:44-308
               
               
               Cow position:chr7:23090219-23089968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:44-308
               
               
               Cow position:chr7:39472606-39472338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 196

               
               
               Conread position:45-294
               
               
               Cow position:chr7:21009026-21008770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:45-316
               
               
               Cow position:chr7:29027068-29027326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:48-302
               
               
               Cow position:chr7:8658429-8658688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):59, 77

               
               
               Conread position:48-311
               
               
               Cow position:chr7:43307091-43307357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):57, 53

               
               
               Conread position:49-259
               
               
               Cow position:chr7:8102338-8102551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:49-311
               
               
               Cow position:chr7:10381718-10381982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:49-314
               
               
               Cow position:chr7:32260285-32260012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:52-293
               
               
               Cow position:chr7:35300500-35300253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 89

               
               
               Conread position:53-321
               
               
               Cow position:chr7:53606401-53606143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:56-311
               
               
               Cow position:chr7:36774290-36774548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:57-284
               
               
               Cow position:chr7:33298519-33298288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:57-300
               
               
               Cow position:chr7:14766184-14765956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):222, 51

               
               
               Conread position:57-302
               
               
               Cow position:chr7:23456899-23456645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 93

               
               
               Conread position:57-316
               
               
               Cow position:chr7:60732715-60732451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:60-282
               
               
               Cow position:chr7:18288340-18288117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:60-302
               
               
               Cow position:chr7:9449723-9449484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:64-322
               
               
               Cow position:chr7:35088600-35088846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):104, 66

               
               
               Conread position:66-282
               
               
               Cow position:chr7:428849-428629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:68-302
               
               
               Cow position:chr7:36856479-36856709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:68-322
               
               
               Cow position:chr7:63121477-63121228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:82-322
               
               
               Cow position:chr7:56886560-56886325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:90-277
               
               
               Cow position:chr7:56081560-56081744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:91-314
               
               
               Cow position:chr7:8089127-8089348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:93-303
               
               
               Cow position:chr7:56347856-56347647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):184, 48

               
               
               Conread position:94-274
               
               
               Cow position:chr7:35245621-35245445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):175, 43

               
               
               Conread position:94-301
               
               
               Cow position:chr7:11549634-11549836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):194, 47

               
               
               Conread position:94-302
               
               
               Cow position:chr7:29505082-29505288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:94-308
               
               
               Cow position:chr7:37466478-37466694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:94-309
               
               
               Cow position:chr7:25785806-25786017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):142, 30

               
               
               Conread position:94-322
               
               
               Cow position:chr7:50493961-50494185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr7:68857619-68857399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:95-267
               
               
               Cow position:chr7:10759744-10759574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:95-316
               
               
               Cow position:chr7:23761942-23762163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):184, 42

               
               
               Conread position:96-320
               
               
               Cow position:chr7:49405261-49405480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):209, 41

               
               
               Conread position:97-322
               
               
               Cow position:chr7:29682481-29682262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):163, 44

               
               
               Conread position:100-248
               
               
               Cow position:chr7:19221540-19221686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:100-316
               
               
               Cow position:chr7:50166000-50166210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:101-272
               
               
               Cow position:chr7:24168492-24168652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:102-322
               
               
               Cow position:chr7:23464238-23464449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):179, 39

               
               
               Conread position:104-277
               
               
               Cow position:chr7:43296886-43297058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-305
               
               
               Cow position:chr7:17750858-17750666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:104-305
               
               
               Cow position:chr7:26263680-26263475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:105-277
               
               
               Cow position:chr7:29121883-29122048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:105-287
               
               
               Cow position:chr7:61699716-61699535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):152, 28

               
               
               Conread position:105-314
               
               
               Cow position:chr7:11785068-11784859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:106-293
               
               
               Cow position:chr7:39823619-39823436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):124, 30

               
               
               Conread position:106-294
               
               
               Cow position:chr7:40235775-40235584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:106-301
               
               
               Cow position:chr7:14316922-14317114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-311
               
               
               Cow position:chr7:598223-598427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):181, 27

               
               
               Conread position:107-299
               
               
               Cow position:chr7:25393285-25393469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:107-314
               
               
               Cow position:chr7:23818871-23819080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:108-322
               
               
               Cow position:chr7:168685-168472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:109-318
               
               
               Cow position:chr7:31240672-31240874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):175, 24

               
               
               Conread position:114-305
               
               
               Cow position:chr7:9185651-9185834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:114-322
               
               
               Cow position:chr7:38458363-38458570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:115-322
               
               
               Cow position:chr7:37498206-37498002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:116-301
               
               
               Cow position:chr7:32884153-32884329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:117-281
               
               
               Cow position:chr7:32899966-32899805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:118-276
               
               
               Cow position:chr7:49630169-49630324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:118-308
               
               
               Cow position:chr7:40276202-40276017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:122-282
               
               
               Cow position:chr7:29863744-29863902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:123-300
               
               
               Cow position:chr7:2894723-2894899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):171, 14

               
               
               Conread position:124-279
               
               
               Cow position:chr7:29010078-29009930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:124-298
               
               
               Cow position:chr7:56557151-56556979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:124-322
               
               
               Cow position:chr7:11487677-11487485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:126-316
               
               
               Cow position:chr7:14867677-14867491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:128-322
               
               
               Cow position:chr7:26871992-26871804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:128-322
               
               
               Cow position:chr7:26909759-26909577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:129-302
               
               
               Cow position:chr7:9200421-9200249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:131-297
               
               
               Cow position:chr7:15739583-15739418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:132-297
               
               
               Cow position:chr7:12488436-12488602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:133-322
               
               
               Cow position:chr7:52517330-52517521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):148, 161

               
               
               Conread position:134-298
               
               
               Cow position:chr7:53653756-53653595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:134-322
               
               
               Cow position:chr7:9077807-9077622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 153

               
               
               Conread position:136-301
               
               
               Cow position:chr7:9660284-9660446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:137-278
               
               
               Cow position:chr7:9078965-9079103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:137-297
               
               
               Cow position:chr7:50021451-50021290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:137-302
               
               
               Cow position:chr7:11897472-11897644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:137-305
               
               
               Cow position:chr7:31523554-31523721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:137-314
               
               
               Cow position:chr7:11796894-11796717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr7:9161663-9161484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):76, 162

               
               
               Conread position:142-322
               
               
               Cow position:chr7:57066796-57066615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:143-311
               
               
               Cow position:chr7:24460962-24461133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:145-260
               
               
               Cow position:chr7:57244009-57243894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-295
               
               
               Cow position:chr7:10448786-10448638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:145-298
               
               
               Cow position:chr7:16563705-16563554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:145-306
               
               
               Cow position:chr7:8090400-8090241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:145-310
               
               
               Cow position:chr7:57243216-57243051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 119

               
               
               Conread position:145-320
               
               
               Cow position:chr7:6469637-6469810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:146-302
               
               
               Cow position:chr7:6044120-6043963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:146-314
               
               
               Cow position:chr7:10415117-10414951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:146-314
               
               
               Cow position:chr7:39947232-39947064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-297
               
               
               Cow position:chr7:18247811-18247661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-302
               
               
               Cow position:chr7:12495102-12494947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:154-320
               
               
               Cow position:chr7:58800194-58800354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):114, 85

               
               
               Conread position:156-322
               
               
               Cow position:chr7:68595950-68595794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 70

               
               
               Conread position:157-295
               
               
               Cow position:chr7:12658990-12658852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:157-298
               
               
               Cow position:chr7:62498021-62497877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:158-308
               
               
               Cow position:chr7:53653012-53653162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-298
               
               
               Cow position:chr7:1186911-1187047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:163-302
               
               
               Cow position:chr7:11015716-11015855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-276
               
               
               Cow position:chr7:30277370-30277479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:166-322
               
               
               Cow position:chr7:6821082-6821233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:167-296
               
               
               Cow position:chr7:13096017-13096146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:168-321
               
               
               Cow position:chr7:8025392-8025542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:168-322
               
               
               Cow position:chr7:7510814-7510665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:173-303
               
               
               Cow position:chr7:58683170-58683041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:173-305
               
               
               Cow position:chr7:11054595-11054728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:178-302
               
               
               Cow position:chr7:23169882-23170006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-304
               
               
               Cow position:chr7:9733989-9734115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-313
               
               
               Cow position:chr7:23671801-23671938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:178-314
               
               
               Cow position:chr7:12918528-12918396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:179-295
               
               
               Cow position:chr7:17381505-17381621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:183-298
               
               
               Cow position:chr7:25087301-25087416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:183-322
               
               
               Cow position:chr7:4060319-4060458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:184-322
               
               
               Cow position:chr7:7476058-7475920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-302
               
               
               Cow position:chr7:19329243-19329135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-322
               
               
               Cow position:chr7:9024992-9024869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:206-302
               
               
               Cow position:chr7:28584352-28584449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1-311
               
               
               Cow position:chr8:21382856-21382540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):107, 149

               
               
               Conread position:2-312
               
               
               Cow position:chr8:6531253-6531564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:2-321
               
               
               Cow position:chr8:58417538-58417841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:4-263
               
               
               Cow position:chr8:5225200-5224942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:4-293
               
               
               Cow position:chr8:60455032-60455317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 134

               
               
               Conread position:4-310
               
               
               Cow position:chr8:15569624-15569333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:6-258
               
               
               Cow position:chr8:20683809-20684070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 147

               
               
               Conread position:6-295
               
               
               Cow position:chr8:54052156-54052441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-302
               
               
               Cow position:chr8:61157374-61157088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 6

               
               
               Conread position:6-321
               
               
               Cow position:chr8:16031732-16031421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):102, 137

               
               
               Conread position:8-306
               
               
               Cow position:chr8:19284347-19284644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:10-258
               
               
               Cow position:chr8:22755865-22756118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:10-297
               
               
               Cow position:chr8:53383248-53383542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:10-307
               
               
               Cow position:chr8:18207288-18206995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:10-322
               
               
               Cow position:chr8:1620882-1620568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:10-322
               
               
               Cow position:chr8:47284220-47283912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):58, 136

               
               
               Conread position:11-311
               
               
               Cow position:chr8:20836972-20837272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:15-301
               
               
               Cow position:chr8:30324164-30324463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 266

               
               
               Conread position:17-301
               
               
               Cow position:chr8:24471502-24471800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:19-225
               
               
               Cow position:chr8:20355308-20355104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 11

               
               
               Conread position:19-306
               
               
               Cow position:chr8:3891571-3891281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:19-312
               
               
               Cow position:chr8:38780567-38780857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:19-315
               
               
               Cow position:chr8:57397677-57397367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:19-322
               
               
               Cow position:chr8:29958278-29958562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):108, 11

               
               
               Conread position:24-306
               
               
               Cow position:chr8:8324015-8323724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):5, 131

               
               
               Conread position:26-278
               
               
               Cow position:chr8:37192231-37192482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:26-302
               
               
               Cow position:chr8:11612409-11612696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 123

               
               
               Conread position:27-301
               
               
               Cow position:chr8:1187779-1188057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:27-302
               
               
               Cow position:chr8:29026773-29026499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:27-309
               
               
               Cow position:chr8:53948556-53948278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):268, 58

               
               
               Conread position:27-311
               
               
               Cow position:chr8:45127836-45127553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:27-311
               
               
               Cow position:chr8:47665042-47664757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 94

               
               
               Conread position:27-318
               
               
               Cow position:chr8:21077453-21077740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:29-288
               
               
               Cow position:chr8:43027791-43027528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:29-289
               
               
               Cow position:chr8:13221986-13221725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:29-292
               
               
               Cow position:chr8:43168160-43167896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):79, 27

               
               
               Conread position:29-297
               
               
               Cow position:chr8:19011930-19011656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:29-297
               
               
               Cow position:chr8:36375644-36375378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:29-302
               
               
               Cow position:chr8:23179679-23179402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:29-304
               
               
               Cow position:chr8:38681747-38682022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:29-311
               
               
               Cow position:chr8:35990915-35991202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:29-311
               
               
               Cow position:chr8:50708917-50709205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:29-314
               
               
               Cow position:chr8:43112971-43112696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 110

               
               
               Conread position:29-314
               
               
               Cow position:chr8:45447237-45446947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:29-322
               
               
               Cow position:chr8:37173204-37172903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:29-322
               
               
               Cow position:chr8:37571840-37571548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:30-301
               
               
               Cow position:chr8:45925486-45925755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:30-302
               
               
               Cow position:chr8:33640229-33640507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:30-304
               
               
               Cow position:chr8:45878904-45879176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:30-308
               
               
               Cow position:chr8:58875929-58876218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 252

               
               
               Conread position:30-322
               
               
               Cow position:chr8:42794448-42794158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:31-283
               
               
               Cow position:chr8:53558741-53558486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:31-320
               
               
               Cow position:chr8:2904549-2904256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):5, 109

               
               
               Conread position:32-192
               
               
               Cow position:chr8:17669871-17669705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:32-196
               
               
               Cow position:chr8:39721535-39721705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:32-198
               
               
               Cow position:chr8:637931-638097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:32-204
               
               
               Cow position:chr8:55926070-55926244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:32-220
               
               
               Cow position:chr8:19998212-19998024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:32-228
               
               
               Cow position:chr8:37582221-37582029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:32-241
               
               
               Cow position:chr8:10297867-10297656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:32-246
               
               
               Cow position:chr8:28294974-28294761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:32-265
               
               
               Cow position:chr8:16938587-16938363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:32-267
               
               
               Cow position:chr8:554318-554078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 118

               
               
               Conread position:32-271
               
               
               Cow position:chr8:5979809-5980053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:32-271
               
               
               Cow position:chr8:17103552-17103316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 151

               
               
               Conread position:32-275
               
               
               Cow position:chr8:10263295-10263050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:32-277
               
               
               Cow position:chr8:6076677-6076437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:32-277
               
               
               Cow position:chr8:24201774-24202034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):68, 232

               
               
               Conread position:32-277
               
               
               Cow position:chr8:29625094-29624852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:32-277
               
               
               Cow position:chr8:53362979-53362740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:32-281
               
               
               Cow position:chr8:39630642-39630893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-282
               
               
               Cow position:chr8:58520158-58520416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):58, 119

               
               
               Conread position:32-287
               
               
               Cow position:chr8:6233030-6232765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 129

               
               
               Conread position:32-292
               
               
               Cow position:chr8:1169409-1169154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 50

               
               
               Conread position:32-293
               
               
               Cow position:chr8:10337156-10336905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:32-293
               
               
               Cow position:chr8:20339151-20339408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:32-293
               
               
               Cow position:chr8:25455276-25455538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:32-293
               
               
               Cow position:chr8:31297135-31297405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:32-293
               
               
               Cow position:chr8:33406976-33406711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:32-294
               
               
               Cow position:chr8:28884698-28884971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:32-296
               
               
               Cow position:chr8:4924436-4924702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):74, 117

               
               
               Conread position:32-296
               
               
               Cow position:chr8:32093746-32094009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-296
               
               
               Cow position:chr8:37334040-37334299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-296
               
               
               Cow position:chr8:55897937-55897677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:32-296
               
               
               Cow position:chr8:59250600-59250865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:32-297
               
               
               Cow position:chr8:6724468-6724209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:32-297
               
               
               Cow position:chr8:19717227-19716972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:32-297
               
               
               Cow position:chr8:38711469-38711731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:32-298
               
               
               Cow position:chr8:6073947-6073678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:32-298
               
               
               Cow position:chr8:32133142-32133407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:32-299
               
               
               Cow position:chr8:35971718-35971988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-300
               
               
               Cow position:chr8:19980208-19979937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 111

               
               
               Conread position:32-300
               
               
               Cow position:chr8:39807462-39807741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:32-301
               
               
               Cow position:chr8:3446231-3445953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:32-301
               
               
               Cow position:chr8:10456333-10456607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-301
               
               
               Cow position:chr8:17180158-17179894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:32-301
               
               
               Cow position:chr8:59766468-59766736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-302
               
               
               Cow position:chr8:1394096-1394374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:32-302
               
               
               Cow position:chr8:3015341-3015624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-302
               
               
               Cow position:chr8:25349580-25349853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-302
               
               
               Cow position:chr8:35580768-35580493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-302
               
               
               Cow position:chr8:37391489-37391215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:32-302
               
               
               Cow position:chr8:43439478-43439755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:32-302
               
               
               Cow position:chr8:43478912-43479177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):165, 76

               
               
               Conread position:32-302
               
               
               Cow position:chr8:55716628-55716894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:32-303
               
               
               Cow position:chr8:28313854-28313579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):74, 117

               
               
               Conread position:32-305
               
               
               Cow position:chr8:53338792-53338519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:32-306
               
               
               Cow position:chr8:5893811-5894087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:32-306
               
               
               Cow position:chr8:19995863-19995588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:32-306
               
               
               Cow position:chr8:20034041-20033773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:32-306
               
               
               Cow position:chr8:47136140-47135869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:32-310
               
               
               Cow position:chr8:16653287-16653558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:32-310
               
               
               Cow position:chr8:29262655-29262940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):172, 28

               
               
               Conread position:32-310
               
               
               Cow position:chr8:40032945-40032669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-311
               
               
               Cow position:chr8:948414-948681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr8:11927019-11927279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr8:12798800-12799070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr8:13374415-13374696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-311
               
               
               Cow position:chr8:24980567-24980850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:32-311
               
               
               Cow position:chr8:25388010-25388288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-311
               
               
               Cow position:chr8:26386352-26386065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:32-311
               
               
               Cow position:chr8:28987574-28987852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:32-311
               
               
               Cow position:chr8:35504368-35504085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 175

               
               
               Conread position:32-311
               
               
               Cow position:chr8:38596345-38596073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:32-311
               
               
               Cow position:chr8:39174378-39174091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:32-314
               
               
               Cow position:chr8:2774653-2774941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:32-314
               
               
               Cow position:chr8:8190198-8189905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:32-314
               
               
               Cow position:chr8:28229594-28229319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):252, 64

               
               
               Conread position:32-314
               
               
               Cow position:chr8:55884839-55885127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:32-315
               
               
               Cow position:chr8:38572406-38572114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 127

               
               
               Conread position:32-315
               
               
               Cow position:chr8:42762563-42762276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-318
               
               
               Cow position:chr8:45287415-45287141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:32-320
               
               
               Cow position:chr8:2865776-2866063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:32-320
               
               
               Cow position:chr8:50310987-50310695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:32-321
               
               
               Cow position:chr8:1011848-1012139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr8:1023832-1024115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:32-322
               
               
               Cow position:chr8:8987075-8986774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-322
               
               
               Cow position:chr8:10970699-10970990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):65, 254

               
               
               Conread position:32-322
               
               
               Cow position:chr8:11606202-11606487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:32-322
               
               
               Cow position:chr8:15394992-15394703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:32-322
               
               
               Cow position:chr8:15426621-15426905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):245, 64

               
               
               Conread position:32-322
               
               
               Cow position:chr8:16060956-16061228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:32-322
               
               
               Cow position:chr8:17199567-17199275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:32-322
               
               
               Cow position:chr8:18730308-18730613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:32-322
               
               
               Cow position:chr8:24867874-24867585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr8:32621124-32620827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr8:35563199-35563497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr8:37347593-37347293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 116

               
               
               Conread position:32-322
               
               
               Cow position:chr8:40280556-40280842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:32-322
               
               
               Cow position:chr8:46235571-46235861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:32-322
               
               
               Cow position:chr8:61567499-61567217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:33-256
               
               
               Cow position:chr8:33400327-33400116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:33-270
               
               
               Cow position:chr8:37122843-37123075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):158, 75

               
               
               Conread position:33-275
               
               
               Cow position:chr8:3338954-3339191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:33-277
               
               
               Cow position:chr8:45830759-45830996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 147

               
               
               Conread position:33-288
               
               
               Cow position:chr8:983607-983861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:33-292
               
               
               Cow position:chr8:33432125-33432391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:33-293
               
               
               Cow position:chr8:32854943-32854691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:33-297
               
               
               Cow position:chr8:33974429-33974694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 112

               
               
               Conread position:33-298
               
               
               Cow position:chr8:8577706-8577965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:33-302
               
               
               Cow position:chr8:19642339-19642610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:33-302
               
               
               Cow position:chr8:36249552-36249275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-302
               
               
               Cow position:chr8:48528094-48527820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:33-303
               
               
               Cow position:chr8:60463387-60463648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:33-314
               
               
               Cow position:chr8:47169827-47170097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:33-314
               
               
               Cow position:chr8:61537972-61537694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:33-316
               
               
               Cow position:chr8:30463261-30463553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 114

               
               
               Conread position:33-322
               
               
               Cow position:chr8:37292217-37291931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:34-296
               
               
               Cow position:chr8:10081797-10082038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:34-297
               
               
               Cow position:chr8:7610071-7609798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:34-302
               
               
               Cow position:chr8:53214456-53214186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:34-304
               
               
               Cow position:chr8:2814492-2814768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 108

               
               
               Conread position:34-311
               
               
               Cow position:chr8:2931825-2931550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):74, 52

               
               
               Conread position:34-311
               
               
               Cow position:chr8:38893879-38894162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 52

               
               
               Conread position:34-322
               
               
               Cow position:chr8:24328977-24328690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:35-271
               
               
               Cow position:chr8:32988614-32988852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 125

               
               
               Conread position:35-276
               
               
               Cow position:chr8:9705474-9705717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 109

               
               
               Conread position:35-277
               
               
               Cow position:chr8:18057624-18057863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:35-277
               
               
               Cow position:chr8:25628218-25628464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 124

               
               
               Conread position:35-288
               
               
               Cow position:chr8:40143983-40143724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:35-293
               
               
               Cow position:chr8:18081410-18081666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 116

               
               
               Conread position:35-297
               
               
               Cow position:chr8:4796653-4796895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):166, 37

               
               
               Conread position:35-297
               
               
               Cow position:chr8:12779015-12778756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:35-299
               
               
               Cow position:chr8:37636119-37635855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 35

               
               
               Conread position:35-302
               
               
               Cow position:chr8:935578-935851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 117

               
               
               Conread position:35-302
               
               
               Cow position:chr8:20107913-20107651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 71

               
               
               Conread position:35-306
               
               
               Cow position:chr8:37298349-37298621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:35-308
               
               
               Cow position:chr8:7149824-7149553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:35-314
               
               
               Cow position:chr8:6951402-6951677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:35-314
               
               
               Cow position:chr8:54302899-54303170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:35-315
               
               
               Cow position:chr8:26651165-26651445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 10

               
               
               Conread position:35-316
               
               
               Cow position:chr8:38861826-38861544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:35-322
               
               
               Cow position:chr8:2897747-2897446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:36-287
               
               
               Cow position:chr8:6485061-6484805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:36-289
               
               
               Cow position:chr8:37862450-37862700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:36-295
               
               
               Cow position:chr8:55502473-55502720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:36-296
               
               
               Cow position:chr8:1303777-1304043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:36-314
               
               
               Cow position:chr8:24371844-24371563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:36-320
               
               
               Cow position:chr8:13660907-13661183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):150, 24

               
               
               Conread position:36-322
               
               
               Cow position:chr8:34477991-34478285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:37-270
               
               
               Cow position:chr8:35211050-35210823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:37-282
               
               
               Cow position:chr8:20073310-20073058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:37-302
               
               
               Cow position:chr8:53229903-53230162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:40-279
               
               
               Cow position:chr8:31985143-31985385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:41-298
               
               
               Cow position:chr8:48955814-48956082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:42-228
               
               
               Cow position:chr8:25579415-25579605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 53

               
               
               Conread position:42-301
               
               
               Cow position:chr8:4649010-4648745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:42-301
               
               
               Cow position:chr8:5866954-5867206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:42-301
               
               
               Cow position:chr8:58058619-58058884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:42-322
               
               
               Cow position:chr8:6193847-6194137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:43-314
               
               
               Cow position:chr8:44449718-44449450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):214, 93

               
               
               Conread position:44-277
               
               
               Cow position:chr8:12213893-12214131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 90

               
               
               Conread position:44-306
               
               
               Cow position:chr8:19475206-19474937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 116

               
               
               Conread position:44-309
               
               
               Cow position:chr8:54147544-54147815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:48-298
               
               
               Cow position:chr8:10400188-10400436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:51-314
               
               
               Cow position:chr8:6224548-6224284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:51-322
               
               
               Cow position:chr8:19204558-19204288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):14, 96

               
               
               Conread position:57-292
               
               
               Cow position:chr8:53481701-53481945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:57-314
               
               
               Cow position:chr8:27955258-27954998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:61-311
               
               
               Cow position:chr8:17232466-17232210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:61-321
               
               
               Cow position:chr8:57406657-57406922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:65-301
               
               
               Cow position:chr8:46082068-46082308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:66-317
               
               
               Cow position:chr8:55871800-55871540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):42, 82

               
               
               Conread position:67-322
               
               
               Cow position:chr8:20320401-20320644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:69-308
               
               
               Cow position:chr8:17167471-17167718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:85-275
               
               
               Cow position:chr8:35523690-35523501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:89-302
               
               
               Cow position:chr8:32130161-32130374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:89-311
               
               
               Cow position:chr8:12795756-12795975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:89-320
               
               
               Cow position:chr8:5468159-5467930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:91-302
               
               
               Cow position:chr8:47500736-47500946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:91-306
               
               
               Cow position:chr8:18647429-18647217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:91-322
               
               
               Cow position:chr8:32278415-32278190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:92-314
               
               
               Cow position:chr8:49656488-49656277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:92-322
               
               
               Cow position:chr8:49305818-49305593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:93-308
               
               
               Cow position:chr8:3922778-3922568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-232
               
               
               Cow position:chr8:37854877-37854746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:94-272
               
               
               Cow position:chr8:20657425-20657250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:94-291
               
               
               Cow position:chr8:37709088-37709281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:94-297
               
               
               Cow position:chr8:53633289-53633086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:94-300
               
               
               Cow position:chr8:15856908-15857114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):197, 48

               
               
               Conread position:94-301
               
               
               Cow position:chr8:18728723-18728927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:94-306
               
               
               Cow position:chr8:34774436-34774640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:94-309
               
               
               Cow position:chr8:51208713-51208932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:94-310
               
               
               Cow position:chr8:36671853-36672069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:94-310
               
               
               Cow position:chr8:40579474-40579263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):184, 39

               
               
               Conread position:94-320
               
               
               Cow position:chr8:6616854-6616627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):175, 42

               
               
               Conread position:94-321
               
               
               Cow position:chr8:8097326-8097110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:95-301
               
               
               Cow position:chr8:53746639-53746428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:95-322
               
               
               Cow position:chr8:55901088-55900870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:96-309
               
               
               Cow position:chr8:45126298-45126085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:100-311
               
               
               Cow position:chr8:50335579-50335374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:101-302
               
               
               Cow position:chr8:26315549-26315353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:101-314
               
               
               Cow position:chr8:36531658-36531448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:101-314
               
               
               Cow position:chr8:46743370-46743160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):178, 36

               
               
               Conread position:101-314
               
               
               Cow position:chr8:55247648-55247441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:101-317
               
               
               Cow position:chr8:41219270-41219487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:101-322
               
               
               Cow position:chr8:18171073-18170845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):175, 36

               
               
               Conread position:101-322
               
               
               Cow position:chr8:26284910-26284698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:102-302
               
               
               Cow position:chr8:9655522-9655716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):177, 7

               
               
               Conread position:104-283
               
               
               Cow position:chr8:6248929-6248754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:104-297
               
               
               Cow position:chr8:5437709-5437902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-298
               
               
               Cow position:chr8:55089903-55089711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:104-299
               
               
               Cow position:chr8:52772878-52773074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:104-314
               
               
               Cow position:chr8:58393509-58393716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:106-298
               
               
               Cow position:chr8:25133524-25133711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:106-302
               
               
               Cow position:chr8:19860709-19860527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:106-302
               
               
               Cow position:chr8:25751922-25751733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):25, 37

               
               
               Conread position:106-306
               
               
               Cow position:chr8:49659080-49659273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:106-309
               
               
               Cow position:chr8:15391212-15391010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:106-322
               
               
               Cow position:chr8:16144078-16144288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:106-322
               
               
               Cow position:chr8:21911588-21911798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:106-322
               
               
               Cow position:chr8:55974866-55974658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:107-278
               
               
               Cow position:chr8:44558091-44557922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:107-298
               
               
               Cow position:chr8:61443265-61443079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:108-314
               
               
               Cow position:chr8:55070664-55070873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:111-305
               
               
               Cow position:chr8:22615501-22615310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:114-320
               
               
               Cow position:chr8:22600139-22599937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:117-293
               
               
               Cow position:chr8:60339960-60339784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):156, 18

               
               
               Conread position:117-297
               
               
               Cow position:chr8:37559091-37559268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:117-304
               
               
               Cow position:chr8:834378-834561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:126-322
               
               
               Cow position:chr8:20911112-20910917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 153

               
               
               Conread position:128-304
               
               
               Cow position:chr8:44847582-44847756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:130-298
               
               
               Cow position:chr8:4525052-4525219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:131-295
               
               
               Cow position:chr8:5877614-5877777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:131-311
               
               
               Cow position:chr8:38645913-38645733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 6

               
               
               Conread position:133-322
               
               
               Cow position:chr8:35555349-35555156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:134-275
               
               
               Cow position:chr8:1843158-1843018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:134-308
               
               
               Cow position:chr8:52229717-52229543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-322
               
               
               Cow position:chr8:34060187-34060007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:136-322
               
               
               Cow position:chr8:53965501-53965315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-294
               
               
               Cow position:chr8:38639214-38639371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-298
               
               
               Cow position:chr8:47248560-47248727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:138-311
               
               
               Cow position:chr8:37672013-37672185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:142-305
               
               
               Cow position:chr8:24428825-24428660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 93

               
               
               Conread position:142-322
               
               
               Cow position:chr8:28209964-28210141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:142-322
               
               
               Cow position:chr8:43104312-43104128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:143-287
               
               
               Cow position:chr8:37855357-37855498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:143-311
               
               
               Cow position:chr8:42112841-42112675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:143-322
               
               
               Cow position:chr8:24905450-24905633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):131, 8

               
               
               Conread position:145-281
               
               
               Cow position:chr8:16957607-16957743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-297
               
               
               Cow position:chr8:58636727-58636875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):144, 98

               
               
               Conread position:145-305
               
               
               Cow position:chr8:33994227-33994387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:145-305
               
               
               Cow position:chr8:43153705-43153545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:133
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr8:61293914-61294077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:145-314
               
               
               Cow position:chr8:47410067-47410237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:145-314
               
               
               Cow position:chr8:54061883-54062052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):162, 151

               
               
               Conread position:145-318
               
               
               Cow position:chr8:32198155-32197985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 64

               
               
               Conread position:146-305
               
               
               Cow position:chr8:2762407-2762562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:146-322
               
               
               Cow position:chr8:3887318-3887490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:147-320
               
               
               Cow position:chr8:40633880-40633710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:148-297
               
               
               Cow position:chr8:3914579-3914724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:148-301
               
               
               Cow position:chr8:19616304-19616451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:151-302
               
               
               Cow position:chr8:48555665-48555517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:154-284
               
               
               Cow position:chr8:41888376-41888506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:154-310
               
               
               Cow position:chr8:5884697-5884539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:154-314
               
               
               Cow position:chr8:19784856-19785013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:155-322
               
               
               Cow position:chr8:55194168-55194329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:158-282
               
               
               Cow position:chr8:1177883-1177760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:161-302
               
               
               Cow position:chr8:61556952-61556812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:163-297
               
               
               Cow position:chr8:517900-518031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):116, 36

               
               
               Conread position:166-287
               
               
               Cow position:chr8:53587311-53587193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:169-295
               
               
               Cow position:chr8:8714803-8714929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:169-302
               
               
               Cow position:chr8:4590998-4590865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:170-296
               
               
               Cow position:chr8:5546148-5546274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:170-311
               
               
               Cow position:chr8:45232563-45232700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:171-298
               
               
               Cow position:chr8:25640090-25639964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:174-300
               
               
               Cow position:chr8:61677187-61677309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:178-275
               
               
               Cow position:chr8:20345702-20345801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:178-300
               
               
               Cow position:chr8:61848709-61848586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:179-322
               
               
               Cow position:chr8:54546610-54546754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:180-302
               
               
               Cow position:chr8:55502803-55502927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:180-322
               
               
               Cow position:chr8:35452594-35452728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:183-322
               
               
               Cow position:chr8:19817572-19817432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:183-322
               
               
               Cow position:chr8:29173232-29173365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:184-314
               
               
               Cow position:chr8:39898720-39898846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:185-322
               
               
               Cow position:chr8:39190582-39190719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:187-311
               
               
               Cow position:chr8:60585190-60585065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:189-285
               
               
               Cow position:chr8:3369476-3369574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:194-321
               
               
               Cow position:chr8:22554258-22554135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:200-314
               
               
               Cow position:chr8:50682142-50682258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1-314
               
               
               Cow position:chr9:18381060-18380753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:1-322
               
               
               Cow position:chr9:61022813-61022506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):107, 123

               
               
               Conread position:2-306
               
               
               Cow position:chr9:30402221-30402532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:2-321
               
               
               Cow position:chr9:21459954-21460268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:4-277
               
               
               Cow position:chr9:46316585-46316858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 133

               
               
               Conread position:4-314
               
               
               Cow position:chr9:42445779-42446096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:6-221
               
               
               Cow position:chr9:22361204-22360989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 6

               
               
               Conread position:6-224
               
               
               Cow position:chr9:3410969-3410758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:6-263
               
               
               Cow position:chr9:8534487-8534753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):65, 148

               
               
               Conread position:6-275
               
               
               Cow position:chr9:62907846-62908094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:6-302
               
               
               Cow position:chr9:9595758-9596053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):206, 17

               
               
               Conread position:6-304
               
               
               Cow position:chr9:51620629-51620342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-306
               
               
               Cow position:chr9:4267791-4268088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-311
               
               
               Cow position:chr9:56773272-56772965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-320
               
               
               Cow position:chr9:23388485-23388793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:7-316
               
               
               Cow position:chr9:13205375-13205681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:7-322
               
               
               Cow position:chr9:20416320-20416629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:8-301
               
               
               Cow position:chr9:13670827-13670532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):70, 5

               
               
               Conread position:9-186
               
               
               Cow position:chr9:59507282-59507103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:9-297
               
               
               Cow position:chr9:19903261-19902985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:9-297
               
               
               Cow position:chr9:57896924-57897207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:9-311
               
               
               Cow position:chr9:22696417-22696110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:9-322
               
               
               Cow position:chr9:34689408-34689720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:10-277
               
               
               Cow position:chr9:60027391-60027120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):67, 127

               
               
               Conread position:10-293
               
               
               Cow position:chr9:5433831-5433541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:10-314
               
               
               Cow position:chr9:28726527-28726844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):97, 152

               
               
               Conread position:10-322
               
               
               Cow position:chr9:1729480-1729792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:11-276
               
               
               Cow position:chr9:7363218-7362952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:14-249
               
               
               Cow position:chr9:53211305-53211540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:17-318
               
               
               Cow position:chr9:10308822-10309114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:19-227
               
               
               Cow position:chr9:34742543-34742751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:19-251
               
               
               Cow position:chr9:35375613-35375375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:19-297
               
               
               Cow position:chr9:18342908-18342634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:19-311
               
               
               Cow position:chr9:9461470-9461765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 143

               
               
               Conread position:23-282
               
               
               Cow position:chr9:4580235-4580486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:25-322
               
               
               Cow position:chr9:16300387-16300692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):40, 266

               
               
               Conread position:26-322
               
               
               Cow position:chr9:33823276-33823001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:27-285
               
               
               Cow position:chr9:44914911-44915182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:27-296
               
               
               Cow position:chr9:55889984-55889721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 115

               
               
               Conread position:27-298
               
               
               Cow position:chr9:30652529-30652805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:27-314
               
               
               Cow position:chr9:30477604-30477887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:27-322
               
               
               Cow position:chr9:15215505-15215805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:28-285
               
               
               Cow position:chr9:55321814-55321552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):5, 115

               
               
               Conread position:28-314
               
               
               Cow position:chr9:39011301-39011583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:28-316
               
               
               Cow position:chr9:26086240-26085942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):5, 183

               
               
               Conread position:29-265
               
               
               Cow position:chr9:4861563-4861319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 134

               
               
               Conread position:29-272
               
               
               Cow position:chr9:41679920-41679675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:29-285
               
               
               Cow position:chr9:5509896-5509641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:29-292
               
               
               Cow position:chr9:34468410-34468670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:29-294
               
               
               Cow position:chr9:9624856-9625103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:29-296
               
               
               Cow position:chr9:8636827-8636570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):256, 38

               
               
               Conread position:29-300
               
               
               Cow position:chr9:48628202-48627928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 138

               
               
               Conread position:29-313
               
               
               Cow position:chr9:18216929-18217212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:29-322
               
               
               Cow position:chr9:9199609-9199900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 115

               
               
               Conread position:29-322
               
               
               Cow position:chr9:38846178-38846456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:29-322
               
               
               Cow position:chr9:55118254-55117967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:30-306
               
               
               Cow position:chr9:34374758-34375030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:30-311
               
               
               Cow position:chr9:1938303-1938013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:30-311
               
               
               Cow position:chr9:8288791-8288507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):76, 131

               
               
               Conread position:32-228
               
               
               Cow position:chr9:36827302-36827107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 66

               
               
               Conread position:32-228
               
               
               Cow position:chr9:38344062-38343862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:32-265
               
               
               Cow position:chr9:49710010-49709782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:32-274
               
               
               Cow position:chr9:44921219-44921474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:32-275
               
               
               Cow position:chr9:19493291-19493541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:32-276
               
               
               Cow position:chr9:5319801-5319546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:32-276
               
               
               Cow position:chr9:7634445-7634195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-278
               
               
               Cow position:chr9:23430974-23431225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:32-284
               
               
               Cow position:chr9:32371589-32371835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:32-287
               
               
               Cow position:chr9:19714245-19713993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:32-287
               
               
               Cow position:chr9:20848103-20847848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-287
               
               
               Cow position:chr9:25557137-25556884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):249, 69

               
               
               Conread position:32-287
               
               
               Cow position:chr9:43871151-43870888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:32-288
               
               
               Cow position:chr9:28948024-28947772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:32-292
               
               
               Cow position:chr9:54716443-54716694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:32-294
               
               
               Cow position:chr9:5501029-5500758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:32-295
               
               
               Cow position:chr9:61303175-61302905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:32-296
               
               
               Cow position:chr9:5327426-5327162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:32-296
               
               
               Cow position:chr9:45141433-45141696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:32-296
               
               
               Cow position:chr9:58614661-58614399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:32-297
               
               
               Cow position:chr9:9403004-9403275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 183

               
               
               Conread position:32-298
               
               
               Cow position:chr9:21888341-21888072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:32-298
               
               
               Cow position:chr9:53762869-53762596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:32-301
               
               
               Cow position:chr9:3738050-3738325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:32-301
               
               
               Cow position:chr9:8998528-8998248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:32-301
               
               
               Cow position:chr9:9516598-9516851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:32-301
               
               
               Cow position:chr9:22151913-22152186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:32-301
               
               
               Cow position:chr9:28354690-28354418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):74, 116

               
               
               Conread position:32-301
               
               
               Cow position:chr9:31078913-31079180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:32-301
               
               
               Cow position:chr9:55256379-55256653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:32-302
               
               
               Cow position:chr9:4340998-4341261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:32-302
               
               
               Cow position:chr9:17740776-17741044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 90

               
               
               Conread position:32-302
               
               
               Cow position:chr9:20091213-20090948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:32-302
               
               
               Cow position:chr9:34957883-34958155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:32-302
               
               
               Cow position:chr9:41728428-41728157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:32-302
               
               
               Cow position:chr9:50139457-50139183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 115

               
               
               Conread position:32-303
               
               
               Cow position:chr9:5246027-5245753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:32-303
               
               
               Cow position:chr9:60110410-60110149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):236, 35

               
               
               Conread position:32-305
               
               
               Cow position:chr9:52578365-52578643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 108

               
               
               Conread position:32-305
               
               
               Cow position:chr9:60394879-60395153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:32-306
               
               
               Cow position:chr9:15805753-15806029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:32-306
               
               
               Cow position:chr9:33119714-33119994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-308
               
               
               Cow position:chr9:29825208-29824921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):76, 191

               
               
               Conread position:32-308
               
               
               Cow position:chr9:62668424-62668142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:32-309
               
               
               Cow position:chr9:19067949-19067675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:32-309
               
               
               Cow position:chr9:36445795-36445507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:32-309
               
               
               Cow position:chr9:50543252-50543536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:32-310
               
               
               Cow position:chr9:9654140-9654417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:32-310
               
               
               Cow position:chr9:11319462-11319744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-310
               
               
               Cow position:chr9:55084125-55084413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:32-311
               
               
               Cow position:chr9:1751506-1751226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 118

               
               
               Conread position:32-311
               
               
               Cow position:chr9:8563009-8562711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 196

               
               
               Conread position:32-313
               
               
               Cow position:chr9:19555546-19555265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:32-314
               
               
               Cow position:chr9:6192291-6192572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:32-314
               
               
               Cow position:chr9:30124092-30123815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:32-314
               
               
               Cow position:chr9:55795928-55795643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 182

               
               
               Conread position:32-314
               
               
               Cow position:chr9:64106079-64105788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 250

               
               
               Conread position:32-315
               
               
               Cow position:chr9:766981-767267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:32-318
               
               
               Cow position:chr9:33598153-33597870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:32-321
               
               
               Cow position:chr9:32676854-32676560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 123

               
               
               Conread position:32-322
               
               
               Cow position:chr9:6840179-6839876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 270

               
               
               Conread position:32-322
               
               
               Cow position:chr9:9405879-9406179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-322
               
               
               Cow position:chr9:9416231-9416511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:32-322
               
               
               Cow position:chr9:9443425-9443726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:32-322
               
               
               Cow position:chr9:9552259-9551975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:32-322
               
               
               Cow position:chr9:13169494-13169780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:32-322
               
               
               Cow position:chr9:24887370-24887090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:32-322
               
               
               Cow position:chr9:33218780-33219072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:32-322
               
               
               Cow position:chr9:34286972-34286683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:32-322
               
               
               Cow position:chr9:35167344-35167051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:32-322
               
               
               Cow position:chr9:38793185-38792900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):80, 106

               
               
               Conread position:32-322
               
               
               Cow position:chr9:45285359-45285654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:32-322
               
               
               Cow position:chr9:47906108-47906405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 224

               
               
               Conread position:33-276
               
               
               Cow position:chr9:6879937-6879703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:33-282
               
               
               Cow position:chr9:45756528-45756281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:33-295
               
               
               Cow position:chr9:55287727-55287985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:33-297
               
               
               Cow position:chr9:64091855-64091582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:33-299
               
               
               Cow position:chr9:56453499-56453239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:33-300
               
               
               Cow position:chr9:64155689-64155951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:33-310
               
               
               Cow position:chr9:3782531-3782260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:33-311
               
               
               Cow position:chr9:33940778-33940495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:33-320
               
               
               Cow position:chr9:56032158-56032430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:33-322
               
               
               Cow position:chr9:26279006-26279287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:33-322
               
               
               Cow position:chr9:26477387-26477097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:34-269
               
               
               Cow position:chr9:64344844-64345065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:34-293
               
               
               Cow position:chr9:6952260-6952008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):114, 39

               
               
               Conread position:34-297
               
               
               Cow position:chr9:11299521-11299777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 156

               
               
               Conread position:34-311
               
               
               Cow position:chr9:50202739-50202458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:34-314
               
               
               Cow position:chr9:29006731-29006444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:35-200
               
               
               Cow position:chr9:30195378-30195214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 108

               
               
               Conread position:35-255
               
               
               Cow position:chr9:43875553-43875774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):188, 105

               
               
               Conread position:35-278
               
               
               Cow position:chr9:24873000-24872758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 103

               
               
               Conread position:35-282
               
               
               Cow position:chr9:5763465-5763712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:35-287
               
               
               Cow position:chr9:54493293-54493048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:35-294
               
               
               Cow position:chr9:44831886-44832149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:35-295
               
               
               Cow position:chr9:17871935-17872205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:35-297
               
               
               Cow position:chr9:7409951-7409665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:35-298
               
               
               Cow position:chr9:61997430-61997701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:35-302
               
               
               Cow position:chr9:5263669-5263399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):73, 45

               
               
               Conread position:35-302
               
               
               Cow position:chr9:51720733-51720998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:35-304
               
               
               Cow position:chr9:20579437-20579695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:35-312
               
               
               Cow position:chr9:24997352-24997628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:35-314
               
               
               Cow position:chr9:37017053-37016784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:35-321
               
               
               Cow position:chr9:36490723-36491018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):70, 256

               
               
               Conread position:35-322
               
               
               Cow position:chr9:12225812-12226100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:35-322
               
               
               Cow position:chr9:29184964-29185255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:35-322
               
               
               Cow position:chr9:51204889-51204606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 73

               
               
               Conread position:36-190
               
               
               Cow position:chr9:28773289-28773131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:36-287
               
               
               Cow position:chr9:5077553-5077792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:36-301
               
               
               Cow position:chr9:12910234-12910504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:36-307
               
               
               Cow position:chr9:5594668-5594395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:36-309
               
               
               Cow position:chr9:62357361-62357637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 110

               
               
               Conread position:37-298
               
               
               Cow position:chr9:8723960-8723696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:37-301
               
               
               Cow position:chr9:17799796-17799531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:37-311
               
               
               Cow position:chr9:50080879-50081151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:39-282
               
               
               Cow position:chr9:49292981-49293225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:41-277
               
               
               Cow position:chr9:3378907-3378677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:41-290
               
               
               Cow position:chr9:62656959-62656712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:41-322
               
               
               Cow position:chr9:41394492-41394765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:43-311
               
               
               Cow position:chr9:11303917-11304187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:44-288
               
               
               Cow position:chr9:5219009-5219260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:44-295
               
               
               Cow position:chr9:26344809-26345064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:44-314
               
               
               Cow position:chr9:28747364-28747633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:45-302
               
               
               Cow position:chr9:59013175-59013441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:46-275
               
               
               Cow position:chr9:38289177-38289397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:46-295
               
               
               Cow position:chr9:63896693-63896446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:46-322
               
               
               Cow position:chr9:27279467-27279191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 98

               
               
               Conread position:46-322
               
               
               Cow position:chr9:52267599-52267877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:47-302
               
               
               Cow position:chr9:43757694-43757438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:48-322
               
               
               Cow position:chr9:33114501-33114224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:54-322
               
               
               Cow position:chr9:7953049-7952782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):45, 92

               
               
               Conread position:56-293
               
               
               Cow position:chr9:52839739-52839972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 89

               
               
               Conread position:57-301
               
               
               Cow position:chr9:34284094-34283849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:57-311
               
               
               Cow position:chr9:26310649-26310391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:57-311
               
               
               Cow position:chr9:59386629-59386874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:64-266
               
               
               Cow position:chr9:41486101-41486308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:67-302
               
               
               Cow position:chr9:6189235-6189467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:69-298
               
               
               Cow position:chr9:58451956-58452173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:84-277
               
               
               Cow position:chr9:20465847-20466037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:84-322
               
               
               Cow position:chr9:9686300-9686538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:85-272
               
               
               Cow position:chr9:49689069-49688891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:85-301
               
               
               Cow position:chr9:29339212-29339415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):203, 52

               
               
               Conread position:85-304
               
               
               Cow position:chr9:53109365-53109146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:86-302
               
               
               Cow position:chr9:9311972-9311756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:89-302
               
               
               Cow position:chr9:64064246-64064465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:91-287
               
               
               Cow position:chr9:54615194-54615387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:94-276
               
               
               Cow position:chr9:23955882-23956056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:94-289
               
               
               Cow position:chr9:10819731-10819917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:94-290
               
               
               Cow position:chr9:28754921-28754729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr9:33584581-33584787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:94-302
               
               
               Cow position:chr9:41785322-41785110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 168

               
               
               Conread position:94-308
               
               
               Cow position:chr9:17411090-17411303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):190, 47

               
               
               Conread position:94-310
               
               
               Cow position:chr9:17310461-17310670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:94-311
               
               
               Cow position:chr9:32981970-32982186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:94-314
               
               
               Cow position:chr9:6596133-6596340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-322
               
               
               Cow position:chr9:41283115-41282897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:95-284
               
               
               Cow position:chr9:9460076-9459898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:95-306
               
               
               Cow position:chr9:59997930-59998138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:97-314
               
               
               Cow position:chr9:35832517-35832732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:101-298
               
               
               Cow position:chr9:4630199-4630006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:101-301
               
               
               Cow position:chr9:41781750-41781555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:102-321
               
               
               Cow position:chr9:44770104-44770314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):177, 43

               
               
               Conread position:103-308
               
               
               Cow position:chr9:53750862-53751068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:104-297
               
               
               Cow position:chr9:21080654-21080466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:104-298
               
               
               Cow position:chr9:8628824-8629015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:104-305
               
               
               Cow position:chr9:17840583-17840783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-305
               
               
               Cow position:chr9:37199215-37199023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:104-322
               
               
               Cow position:chr9:29194931-29195147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):184, 11

               
               
               Conread position:106-303
               
               
               Cow position:chr9:43342419-43342228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:106-308
               
               
               Cow position:chr9:38645253-38645452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:108-302
               
               
               Cow position:chr9:40005563-40005371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):180, 25

               
               
               Conread position:108-309
               
               
               Cow position:chr9:24652499-24652295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:108-314
               
               
               Cow position:chr9:34024789-34024584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):171, 31

               
               
               Conread position:110-314
               
               
               Cow position:chr9:50382239-50382434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:111-322
               
               
               Cow position:chr9:34278970-34279174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:115-282
               
               
               Cow position:chr9:30780195-30780036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:115-282
               
               
               Cow position:chr9:63361635-63361801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:116-298
               
               
               Cow position:chr9:23797318-23797139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:116-322
               
               
               Cow position:chr9:51566413-51566613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:121-322
               
               
               Cow position:chr9:54664926-54664733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:130-297
               
               
               Cow position:chr9:7805891-7806058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:133-322
               
               
               Cow position:chr9:52257999-52258181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:134-322
               
               
               Cow position:chr9:49545302-49545480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:136-300
               
               
               Cow position:chr9:57131559-57131395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):82, 73

               
               
               Conread position:137-282
               
               
               Cow position:chr9:52828720-52828574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:137-310
               
               
               Cow position:chr9:52518760-52518931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 116

               
               
               Conread position:138-301
               
               
               Cow position:chr9:36628180-36628018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:141-277
               
               
               Cow position:chr9:6685958-6685822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-265
               
               
               Cow position:chr9:38799428-38799551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-297
               
               
               Cow position:chr9:42586498-42586652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:142-305
               
               
               Cow position:chr9:55354669-55354506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-272
               
               
               Cow position:chr9:22466827-22466700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-297
               
               
               Cow position:chr9:33151797-33151645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr9:19758774-19758610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:145-311
               
               
               Cow position:chr9:39758573-39758403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:145-314
               
               
               Cow position:chr9:4241461-4241292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 145

               
               
               Conread position:145-314
               
               
               Cow position:chr9:43159807-43159638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:145-322
               
               
               Cow position:chr9:5104348-5104525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):134, 76

               
               
               Conread position:145-322
               
               
               Cow position:chr9:47214490-47214664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:146-298
               
               
               Cow position:chr9:22440428-22440576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:147-322
               
               
               Cow position:chr9:53390132-53390323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 154

               
               
               Conread position:148-305
               
               
               Cow position:chr9:16137290-16137447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-311
               
               
               Cow position:chr9:6293646-6293483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:152-322
               
               
               Cow position:chr9:59699499-59699672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:153-306
               
               
               Cow position:chr9:1733391-1733238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:154-293
               
               
               Cow position:chr9:13742569-13742430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:154-301
               
               
               Cow position:chr9:23970850-23970996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 131

               
               
               Conread position:154-322
               
               
               Cow position:chr9:27345538-27345704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:155-304
               
               
               Cow position:chr9:61547743-61547600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:157-314
               
               
               Cow position:chr9:11098413-11098566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:158-291
               
               
               Cow position:chr9:58131911-58132045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):115, 92

               
               
               Conread position:158-322
               
               
               Cow position:chr9:22165671-22165832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:161-272
               
               
               Cow position:chr9:54932854-54932967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:163-282
               
               
               Cow position:chr9:3924480-3924360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:166-308
               
               
               Cow position:chr9:34065514-34065658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:166-311
               
               
               Cow position:chr9:24243687-24243834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:167-298
               
               
               Cow position:chr9:35793710-35793579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:169-302
               
               
               Cow position:chr9:43202365-43202232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:170-314
               
               
               Cow position:chr9:34707282-34707425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:174-301
               
               
               Cow position:chr9:44944452-44944578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:174-311
               
               
               Cow position:chr9:34079072-34079206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:174-314
               
               
               Cow position:chr9:12773716-12773579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:175-287
               
               
               Cow position:chr9:49830869-49830758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:175-296
               
               
               Cow position:chr9:19718315-19718435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:175-302
               
               
               Cow position:chr9:26394325-26394451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:177-311
               
               
               Cow position:chr9:23840372-23840505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:178-312
               
               
               Cow position:chr9:26277850-26277715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:178-318
               
               
               Cow position:chr9:53496732-53496870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:178-322
               
               
               Cow position:chr9:64310757-64310894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:179-306
               
               
               Cow position:chr9:5186846-5186971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):97, 30

               
               
               Conread position:180-305
               
               
               Cow position:chr9:1712686-1712812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:181-304
               
               
               Cow position:chr9:24079321-24079198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:181-304
               
               
               Cow position:chr9:53045327-53045450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:182-305
               
               
               Cow position:chr9:40984523-40984400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:182-314
               
               
               Cow position:chr9:55807649-55807519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:182-322
               
               
               Cow position:chr9:52998362-52998495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:183-302
               
               
               Cow position:chr9:32052293-32052174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:184-298
               
               
               Cow position:chr9:23403834-23403720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:187-311
               
               
               Cow position:chr9:46190155-46190031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:191-321
               
               
               Cow position:chr9:41717683-41717815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:194-322
               
               
               Cow position:chr9:11209439-11209568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 29

               
               
               Conread position:199-322
               
               
               Cow position:chr9:34265096-34264967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:209-322
               
               
               Cow position:chr9:53323793-53323902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1-275
               
               
               Cow position:chrX:45845955-45846232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):106, 11

               
               
               Conread position:1-302
               
               
               Cow position:chrX:15007299-15006990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:1-308
               
               
               Cow position:chrX:27772110-27771804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:2-295
               
               
               Cow position:chrX:44396873-44397161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:2-311
               
               
               Cow position:chrX:5872165-5872484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 155

               
               
               Conread position:4-274
               
               
               Cow position:chrX:35224151-35224426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:6-281
               
               
               Cow position:chrX:20584185-20584465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:6-287
               
               
               Cow position:chrX:20801634-20801913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:6-300
               
               
               Cow position:chrX:37781251-37780954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-314
               
               
               Cow position:chrX:27432051-27431748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:6-322
               
               
               Cow position:chrX:28866140-28865831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:8-307
               
               
               Cow position:chrX:32623447-32623735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):117, 5

               
               
               Conread position:9-302
               
               
               Cow position:chrX:14973879-14973588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:9-302
               
               
               Cow position:chrX:17888553-17888265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:9-308
               
               
               Cow position:chrX:878518-878216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 132

               
               
               Conread position:9-321
               
               
               Cow position:chrX:34532383-34532690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:10-253
               
               
               Cow position:chrX:27680261-27680507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:10-260
               
               
               Cow position:chrX:26625807-26625555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:10-295
               
               
               Cow position:chrX:31442962-31442679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:10-311
               
               
               Cow position:chrX:18695060-18694766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:10-311
               
               
               Cow position:chrX:38853056-38853363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):20, 125

               
               
               Conread position:10-316
               
               
               Cow position:chrX:28878308-28877999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:10-320
               
               
               Cow position:chrX:13647921-13647613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 22

               
               
               Conread position:10-322
               
               
               Cow position:chrX:17231594-17231910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:11-270
               
               
               Cow position:chrX:39126192-39126452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:11-302
               
               
               Cow position:chrX:35383149-35382879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):159, 16

               
               
               Conread position:13-315
               
               
               Cow position:chrX:2004005-2003705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:15-277
               
               
               Cow position:chrX:5638299-5638025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:16-314
               
               
               Cow position:chrX:4515554-4515861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:19-298
               
               
               Cow position:chrX:41068593-41068881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:19-302
               
               
               Cow position:chrX:24424517-24424245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):131, 87

               
               
               Conread position:19-311
               
               
               Cow position:chrX:4043980-4043700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:19-314
               
               
               Cow position:chrX:17541834-17542131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:19-322
               
               
               Cow position:chrX:10831622-10831308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):88, 127

               
               
               Conread position:19-322
               
               
               Cow position:chrX:12249674-12249988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:19-322
               
               
               Cow position:chrX:34315397-34315695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:19-322
               
               
               Cow position:chrX:36975820-36976125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 131

               
               
               Conread position:19-322
               
               
               Cow position:chrX:42247313-42247008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:23-295
               
               
               Cow position:chrX:5679691-5679421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:23-322
               
               
               Cow position:chrX:169664-169368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:26-258
               
               
               Cow position:chrX:38936578-38936814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:26-320
               
               
               Cow position:chrX:9635303-9635018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:27-298
               
               
               Cow position:chrX:33855354-33855066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):81, 228

               
               
               Conread position:28-274
               
               
               Cow position:chrX:37119475-37119723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:28-298
               
               
               Cow position:chrX:38963985-38964262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:28-311
               
               
               Cow position:chrX:13382208-13382492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):5, 116

               
               
               Conread position:29-214
               
               
               Cow position:chrX:26876002-26875811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:29-218
               
               
               Cow position:chrX:13785482-13785286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:29-257
               
               
               Cow position:chrX:7509023-7509252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:29-270
               
               
               Cow position:chrX:8925582-8925824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:29-275
               
               
               Cow position:chrX:1514526-1514288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:29-277
               
               
               Cow position:chrX:11939046-11938801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:29-297
               
               
               Cow position:chrX:1616163-1615895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:29-301
               
               
               Cow position:chrX:29120927-29121204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:29-305
               
               
               Cow position:chrX:619123-618847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:29-308
               
               
               Cow position:chrX:17725855-17726140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:29-310
               
               
               Cow position:chrX:34401879-34402171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:29-320
               
               
               Cow position:chrX:17794866-17795151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:30-277
               
               
               Cow position:chrX:37232295-37232540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):82, 108

               
               
               Conread position:30-298
               
               
               Cow position:chrX:6265715-6265443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:30-301
               
               
               Cow position:chrX:31436360-31436631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 96

               
               
               Conread position:30-302
               
               
               Cow position:chrX:7710661-7710380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:30-308
               
               
               Cow position:chrX:29194116-29194392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:30-311
               
               
               Cow position:chrX:43730336-43730057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:30-322
               
               
               Cow position:chrX:16416392-16416676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:31-314
               
               
               Cow position:chrX:46291022-46291314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:32-192
               
               
               Cow position:chrX:19015322-19015485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-218
               
               
               Cow position:chrX:678680-678481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:32-275
               
               
               Cow position:chrX:917480-917237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-277
               
               
               Cow position:chrX:7161944-7162189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:32-278
               
               
               Cow position:chrX:38066566-38066321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):83, 102

               
               
               Conread position:32-280
               
               
               Cow position:chrX:11082730-11082486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):97, 69

               
               
               Conread position:32-281
               
               
               Cow position:chrX:10412101-10411847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:32-282
               
               
               Cow position:chrX:7646140-7646394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 64

               
               
               Conread position:32-282
               
               
               Cow position:chrX:37986117-37986363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 149

               
               
               Conread position:32-285
               
               
               Cow position:chrX:41870957-41871210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 110

               
               
               Conread position:32-289
               
               
               Cow position:chrX:11073304-11073047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:32-293
               
               
               Cow position:chrX:46587701-46587971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:32-295
               
               
               Cow position:chrX:45976804-45977077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:32-296
               
               
               Cow position:chrX:45110543-45110808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:32-297
               
               
               Cow position:chrX:11614583-11614847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:32-297
               
               
               Cow position:chrX:15814971-15815236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 116

               
               
               Conread position:32-297
               
               
               Cow position:chrX:31311913-31312182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:32-300
               
               
               Cow position:chrX:7721873-7722142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):53, 49

               
               
               Conread position:32-300
               
               
               Cow position:chrX:45430133-45429865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):6, 112

               
               
               Conread position:32-301
               
               
               Cow position:chrX:5919380-5919652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-301
               
               
               Cow position:chrX:14275850-14275586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:32-301
               
               
               Cow position:chrX:27145507-27145761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-302
               
               
               Cow position:chrX:1499549-1499823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:32-302
               
               
               Cow position:chrX:12979943-12979674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 72

               
               
               Conread position:32-302
               
               
               Cow position:chrX:14884074-14883798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:32-302
               
               
               Cow position:chrX:21986408-21986132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:32-302
               
               
               Cow position:chrX:34411728-34412004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:32-302
               
               
               Cow position:chrX:37489610-37489876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:32-302
               
               
               Cow position:chrX:38642145-38642408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:32-303
               
               
               Cow position:chrX:45502036-45502305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:32-305
               
               
               Cow position:chrX:6278618-6278337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:32-305
               
               
               Cow position:chrX:7695632-7695911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:32-305
               
               
               Cow position:chrX:35268766-35269022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:32-306
               
               
               Cow position:chrX:38006880-38006610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 155

               
               
               Conread position:32-308
               
               
               Cow position:chrX:9416809-9416518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 156

               
               
               Conread position:32-308
               
               
               Cow position:chrX:40557797-40557513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:32-309
               
               
               Cow position:chrX:42171412-42171129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:32-310
               
               
               Cow position:chrX:13177581-13177312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:32-310
               
               
               Cow position:chrX:33493662-33493941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:32-311
               
               
               Cow position:chrX:616378-616091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 126

               
               
               Conread position:32-311
               
               
               Cow position:chrX:9365791-9365509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:32-311
               
               
               Cow position:chrX:11085173-11084898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:32-311
               
               
               Cow position:chrX:11717900-11717614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:32-311
               
               
               Cow position:chrX:23785541-23785815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:32-311
               
               
               Cow position:chrX:27394135-27393859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:32-311
               
               
               Cow position:chrX:29680376-29680093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:32-311
               
               
               Cow position:chrX:36067901-36068182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:32-311
               
               
               Cow position:chrX:40269372-40269661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:32-314
               
               
               Cow position:chrX:8869518-8869231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:32-314
               
               
               Cow position:chrX:11655976-11656251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-314
               
               
               Cow position:chrX:38218595-38218886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:32-315
               
               
               Cow position:chrX:37072292-37072560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:32-316
               
               
               Cow position:chrX:8730970-8731261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 196

               
               
               Conread position:32-316
               
               
               Cow position:chrX:39415483-39415201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 106

               
               
               Conread position:32-319
               
               
               Cow position:chrX:42492631-42492351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:32-320
               
               
               Cow position:chrX:14599417-14599704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):75, 94

               
               
               Conread position:32-320
               
               
               Cow position:chrX:22482802-22482518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):98, 74

               
               
               Conread position:32-320
               
               
               Cow position:chrX:27228007-27228300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:32-320
               
               
               Cow position:chrX:31252302-31252579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 144

               
               
               Conread position:32-322
               
               
               Cow position:chrX:4399013-4399291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:32-322
               
               
               Cow position:chrX:4632968-4632681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:32-322
               
               
               Cow position:chrX:4996485-4996761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:32-322
               
               
               Cow position:chrX:5118618-5118325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:32-322
               
               
               Cow position:chrX:11633562-11633855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:32-322
               
               
               Cow position:chrX:13912963-13913248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:32-322
               
               
               Cow position:chrX:20340004-20339720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:32-322
               
               
               Cow position:chrX:23514131-23513834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:32-322
               
               
               Cow position:chrX:26881684-26881388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:32-322
               
               
               Cow position:chrX:29542335-29542055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:32-322
               
               
               Cow position:chrX:31294673-31294396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:32-322
               
               
               Cow position:chrX:32820912-32821213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:32-322
               
               
               Cow position:chrX:34502806-34503101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:32-322
               
               
               Cow position:chrX:34543670-34543958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:32-322
               
               
               Cow position:chrX:35273240-35273545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 186

               
               
               Conread position:32-322
               
               
               Cow position:chrX:35542779-35543057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:32-322
               
               
               Cow position:chrX:40035558-40035266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:32-322
               
               
               Cow position:chrX:40685447-40685156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:32-322
               
               
               Cow position:chrX:43115035-43115322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:33-277
               
               
               Cow position:chrX:6544141-6544387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:33-292
               
               
               Cow position:chrX:9201435-9201696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:33-298
               
               
               Cow position:chrX:20151731-20152010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 181

               
               
               Conread position:33-298
               
               
               Cow position:chrX:23091766-23092027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:33-304
               
               
               Cow position:chrX:45174734-45175010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):53, 106

               
               
               Conread position:33-308
               
               
               Cow position:chrX:41884529-41884248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:33-314
               
               
               Cow position:chrX:22074685-22074970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:33-314
               
               
               Cow position:chrX:29601945-29601656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:33-314
               
               
               Cow position:chrX:35885845-35885559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:33-322
               
               
               Cow position:chrX:7351184-7351477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:33-322
               
               
               Cow position:chrX:27206683-27206972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 57

               
               
               Conread position:33-322
               
               
               Cow position:chrX:34565168-34565458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:33-322
               
               
               Cow position:chrX:41027042-41027333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:34-263
               
               
               Cow position:chrX:47362725-47362504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:34-282
               
               
               Cow position:chrX:17662707-17662460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:34-292
               
               
               Cow position:chrX:48014327-48014583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:34-298
               
               
               Cow position:chrX:34792422-34792159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 200

               
               
               Conread position:34-314
               
               
               Cow position:chrX:38094637-38094351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 173

               
               
               Conread position:34-314
               
               
               Cow position:chrX:42927933-42927656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:34-322
               
               
               Cow position:chrX:42381216-42380937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:35-277
               
               
               Cow position:chrX:2523776-2523549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 56

               
               
               Conread position:35-277
               
               
               Cow position:chrX:29229896-29230132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 74

               
               
               Conread position:35-281
               
               
               Cow position:chrX:42470054-42469804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:35-293
               
               
               Cow position:chrX:35413507-35413760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 107

               
               
               Conread position:35-296
               
               
               Cow position:chrX:22387356-22387098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:35-299
               
               
               Cow position:chrX:9651138-9650869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:35-299
               
               
               Cow position:chrX:12437365-12437119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:35-302
               
               
               Cow position:chrX:6413931-6414199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:35-302
               
               
               Cow position:chrX:46072933-46072661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:35-305
               
               
               Cow position:chrX:41879045-41878771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:35-306
               
               
               Cow position:chrX:38549339-38549609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:35-311
               
               
               Cow position:chrX:6690371-6690093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:35-322
               
               
               Cow position:chrX:30338055-30337781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):244, 38

               
               
               Conread position:35-322
               
               
               Cow position:chrX:38654543-38654259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 43

               
               
               Conread position:36-274
               
               
               Cow position:chrX:19273834-19273577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:36-280
               
               
               Cow position:chrX:7571792-7572042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:36-288
               
               
               Cow position:chrX:39558462-39558206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:36-308
               
               
               Cow position:chrX:42235640-42235359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:36-314
               
               
               Cow position:chrX:30543399-30543116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:36-314
               
               
               Cow position:chrX:41526633-41526359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 103

               
               
               Conread position:36-322
               
               
               Cow position:chrX:6407437-6407717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:37-310
               
               
               Cow position:chrX:37910335-37910614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:37-311
               
               
               Cow position:chrX:8797141-8797416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:38-322
               
               
               Cow position:chrX:45670117-45670398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:42-275
               
               
               Cow position:chrX:37574745-37574971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:42-322
               
               
               Cow position:chrX:30133428-30133147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:43-302
               
               
               Cow position:chrX:34376842-34377100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:45-322
               
               
               Cow position:chrX:24365930-24365649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:46-298
               
               
               Cow position:chrX:34313927-34314178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:46-311
               
               
               Cow position:chrX:16348672-16348404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:46-322
               
               
               Cow position:chrX:31489420-31489694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:47-278
               
               
               Cow position:chrX:11851770-11851545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):163, 61

               
               
               Conread position:51-322
               
               
               Cow position:chrX:9252256-9251990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:52-301
               
               
               Cow position:chrX:34837150-34836909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:54-322
               
               
               Cow position:chrX:47345240-47345503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:56-275
               
               
               Cow position:chrX:45648781-45649013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:56-322
               
               
               Cow position:chrX:1466069-1466333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:57-301
               
               
               Cow position:chrX:29050156-29050405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):51, 96

               
               
               Conread position:57-302
               
               
               Cow position:chrX:918818-918557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:64-305
               
               
               Cow position:chrX:23113194-23113445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 225

               
               
               Conread position:64-322
               
               
               Cow position:chrX:42855371-42855636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:65-293
               
               
               Cow position:chrX:41192625-41192853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 81

               
               
               Conread position:72-301
               
               
               Cow position:chrX:1088212-1087986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 66

               
               
               Conread position:74-298
               
               
               Cow position:chrX:19469574-19469354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:74-301
               
               
               Cow position:chrX:31627052-31626820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:84-322
               
               
               Cow position:chrX:40108574-40108340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:85-293
               
               
               Cow position:chrX:4153092-4152882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:86-301
               
               
               Cow position:chrX:30840482-30840703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:90-322
               
               
               Cow position:chrX:17956646-17956862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:93-276
               
               
               Cow position:chrX:45383104-45382914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:94-282
               
               
               Cow position:chrX:36514940-36514754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:94-298
               
               
               Cow position:chrX:27511381-27511582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:94-302
               
               
               Cow position:chrX:22393032-22392827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:94-306
               
               
               Cow position:chrX:5134429-5134634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 35

               
               
               Conread position:94-309
               
               
               Cow position:chrX:32978123-32977916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):179, 42

               
               
               Conread position:94-317
               
               
               Cow position:chrX:18273104-18272884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):179, 43

               
               
               Conread position:94-322
               
               
               Cow position:chrX:22115362-22115142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:94-322
               
               
               Cow position:chrX:31250341-31250562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:94-322
               
               
               Cow position:chrX:40680565-40680788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:95-322
               
               
               Cow position:chrX:39220034-39220259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:96-322
               
               
               Cow position:chrX:6599828-6599601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 37

               
               
               Conread position:99-322
               
               
               Cow position:chrX:46532541-46532317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:101-276
               
               
               Cow position:chrX:12082364-12082192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:101-297
               
               
               Cow position:chrX:11326139-11325946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:101-311
               
               
               Cow position:chrX:5135564-5135353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):129, 46

               
               
               Conread position:101-322
               
               
               Cow position:chrX:19394513-19394728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:104-272
               
               
               Cow position:chrX:29585084-29585247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:104-298
               
               
               Cow position:chrX:47061358-47061548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:104-308
               
               
               Cow position:chrX:16984591-16984804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:104-311
               
               
               Cow position:chrX:40532080-40531876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:104-313
               
               
               Cow position:chrX:24749051-24749253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:104-316
               
               
               Cow position:chrX:27306416-27306627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):203, 33

               
               
               Conread position:104-320
               
               
               Cow position:chrX:35985782-35985991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:105-297
               
               
               Cow position:chrX:4289404-4289596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:106-282
               
               
               Cow position:chrX:29553251-29553423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:106-285
               
               
               Cow position:chrX:46429856-46429678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-304
               
               
               Cow position:chrX:19943271-19943078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:106-304
               
               
               Cow position:chrX:23188811-23188624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:106-304
               
               
               Cow position:chrX:42893883-42894085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 183

               
               
               Conread position:106-322
               
               
               Cow position:chrX:18964859-18964652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:107-311
               
               
               Cow position:chrX:37129234-37129440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):170, 33

               
               
               Conread position:109-305
               
               
               Cow position:chrX:23498709-23498519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:114-322
               
               
               Cow position:chrX:28940219-28940417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:119-298
               
               
               Cow position:chrX:25411886-25412059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:126-320
               
               
               Cow position:chrX:32943097-32942904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:127-311
               
               
               Cow position:chrX:36848595-36848410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:130-282
               
               
               Cow position:chrX:4616025-4615873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:131-298
               
               
               Cow position:chrX:12972666-12972839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:135-297
               
               
               Cow position:chrX:16836296-16836136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:135-298
               
               
               Cow position:chrX:46989610-46989451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:139-322
               
               
               Cow position:chrX:39180239-39180060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:142-306
               
               
               Cow position:chrX:4559737-4559895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:144-303
               
               
               Cow position:chrX:2935957-2936115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:144-318
               
               
               Cow position:chrX:38227107-38226936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:145-272
               
               
               Cow position:chrX:25328614-25328488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:145-277
               
               
               Cow position:chrX:46070171-46070035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:145-285
               
               
               Cow position:chrX:4466968-4467108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-296
               
               
               Cow position:chrX:42479834-42479984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:145-298
               
               
               Cow position:chrX:29501880-29501730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:145-302
               
               
               Cow position:chrX:27668957-27668800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:132
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-302
               
               
               Cow position:chrX:39290360-39290515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:145-306
               
               
               Cow position:chrX:38587842-38587681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-322
               
               
               Cow position:chrX:24633685-24633867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):64, 150

               
               
               Conread position:146-302
               
               
               Cow position:chrX:32208820-32208665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:148-306
               
               
               Cow position:chrX:42160627-42160785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:149-322
               
               
               Cow position:chrX:42836186-42836354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:150-314
               
               
               Cow position:chrX:41862370-41862533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:154-322
               
               
               Cow position:chrX:24170719-24170552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):112, 85

               
               
               Conread position:155-301
               
               
               Cow position:chrX:25788894-25788748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 139

               
               
               Conread position:156-298
               
               
               Cow position:chrX:23266427-23266568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:156-302
               
               
               Cow position:chrX:29467766-29467621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:157-322
               
               
               Cow position:chrX:20957251-20957412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:158-322
               
               
               Cow position:chrX:38301823-38301987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-311
               
               
               Cow position:chrX:7513505-7513656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 48

               
               
               Conread position:162-314
               
               
               Cow position:chrX:20583683-20583836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:163-287
               
               
               Cow position:chrX:41164633-41164754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:163-302
               
               
               Cow position:chrX:31479990-31480127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 53

               
               
               Conread position:163-308
               
               
               Cow position:chrX:34508563-34508708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-322
               
               
               Cow position:chrX:47079646-47079801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):74, 66

               
               
               Conread position:167-294
               
               
               Cow position:chrX:5026279-5026407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:167-311
               
               
               Cow position:chrX:28098349-28098493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 142

               
               
               Conread position:168-301
               
               
               Cow position:chrX:32866899-32867032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:168-305
               
               
               Cow position:chrX:37062561-37062423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:169-311
               
               
               Cow position:chrX:41939849-41939991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:170-277
               
               
               Cow position:chrX:21573599-21573705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:170-313
               
               
               Cow position:chrX:23359085-23358945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:173-309
               
               
               Cow position:chrX:40046546-40046413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:173-322
               
               
               Cow position:chrX:46079114-46079265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:174-276
               
               
               Cow position:chrX:20340613-20340511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-277
               
               
               Cow position:chrX:4942228-4942125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:174-311
               
               
               Cow position:chrX:16481540-16481403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:174-322
               
               
               Cow position:chrX:8326934-8327078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:175-322
               
               
               Cow position:chrX:29688144-29688002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:181-314
               
               
               Cow position:chrX:41858845-41858711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:181-321
               
               
               Cow position:chrX:6480559-6480423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:185-322
               
               
               Cow position:chrX:31983544-31983405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:186-314
               
               
               Cow position:chrX:23471824-23471695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:201-314
               
               
               Cow position:chrX:17525810-17525701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0