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Cow genome map

           
Conread name:
           
reye1619b_b21r1.y1
        

               
Conread position:
               
1-122
               

               
Cow position:
               
chr1:64729325-64729204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr1:83789999-83789874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr1:80303689-80303562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 66
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr1:89093707-89093834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr1:90862204-90862330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
111, 85
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr1:9147654-9147788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr1:13797864-13797997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr1:28469871-28470004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
3-135
               

               
Cow position:
               
chr1:76660409-76660276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 98
               

               
Conread position:
               
4-113
               

               
Cow position:
               
chr1:93579876-93579768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
4-126
               

               
Cow position:
               
chr1:81225533-81225411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr1:11056255-11056125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr1:93441001-93441134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
5-135
               

               
Cow position:
               
chr1:79931200-79931330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr10:50564464-50564591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
4-127
               

               
Cow position:
               
chr10:41118402-41118524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
5-135
               

               
Cow position:
               
chr10:50565637-50565768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr11:52785784-52785656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr11:2891915-2891772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr11:12320680-12320541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
4-111
               

               
Cow position:
               
chr11:64035231-64035337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
5-118
               

               
Cow position:
               
chr11:18139196-18139083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr12:2005901-2005777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr12:37465791-37465657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr12:20840999-20840839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr12:37481935-37481801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
7-146
               

               
Cow position:
               
chr12:24334142-24334280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 69
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr13:36820414-36820530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr13:5244864-5244738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr13:34189840-34189713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr13:54409304-54409443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
3-108
               

               
Cow position:
               
chr13:18860299-18860195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
4-126
               

               
Cow position:
               
chr13:5610540-5610663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
5-135
               

               
Cow position:
               
chr13:52852158-52852029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
6-122
               

               
Cow position:
               
chr13:33006516-33006632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr14:25504569-25504450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr14:8456622-8456758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr14:37249770-37249636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr14:47013676-47013541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr14:38359574-38359442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
52, 80
               

               
Conread position:
               
3-116
               

               
Cow position:
               
chr14:45765754-45765866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr14:5569976-5570101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr14:18579239-18579372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr14:23148824-23148953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 28
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr14:23755095-23754964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr15:26133688-26133795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr15:22336945-22337076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr15:14219141-14218910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
6-118
               

               
Cow position:
               
chr15:42381936-42381824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
6-135
               

               
Cow position:
               
chr15:9277649-9277520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
17-135
               

               
Cow position:
               
chr15:8284756-8284873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
80, 58
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr16:33439947-33440072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr16:18054591-18054719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr16:27274996-27274864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
55, 85
               

               
Conread position:
               
3-135
               

               
Cow position:
               
chr16:15669053-15668919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
3-135
               

               
Cow position:
               
chr16:33644250-33644118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 101
               

               
Conread position:
               
4-124
               

               
Cow position:
               
chr16:12114136-12114253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr16:28198525-28198402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 81
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr16:40516489-40516362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr16:49979165-49979297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
8-128
               

               
Cow position:
               
chr16:21558209-21558333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr17:9086432-9086559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr17:1101323-1101458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr17:27865407-27865539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr17:35265147-35265017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr17:22808635-22808517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr17:23783751-23783628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr17:22470185-22470056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr17:41715478-41715610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr18:52249081-52249203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr18:39097773-39097893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr18:4494897-4494772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr18:14140031-14140162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr18:21737242-21737108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 103
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr18:17220876-17220653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr18:17235524-17235301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr19:51647476-51647348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr19:36592860-36592726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr19:15972063-15971940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr19:6541832-6541968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr2:19063585-19063705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 14
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr2:60310808-60310944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr2:64784337-64784471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
4-121
               

               
Cow position:
               
chr2:23646418-23646301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr2:45113732-45113617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr2:19150265-19150386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr2:33219196-33219326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
6-133
               

               
Cow position:
               
chr2:40449522-40449650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr20:2885792-2885910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr20:26055877-26055993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr20:24000425-24000561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr20:18828736-18828863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
5-126
               

               
Cow position:
               
chr20:41446053-41446174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
17-126
               

               
Cow position:
               
chr20:12324593-12324485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chr21:42074748-42074641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 103
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr21:32040371-32040236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr21:8515747-8515874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr21:47955497-47955631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr21:1567535-1567701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 82
               

               
Conread position:
               
6-127
               

               
Cow position:
               
chr21:162946-163067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr22:22242458-22242586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr22:894230-894100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr22:6238814-6238683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
2-133
               

               
Cow position:
               
chr22:2013580-2013713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-115
               

               
Cow position:
               
chr22:20077989-20077878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr22:35460101-35459984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr22:7211101-7210971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr23:1899622-1899508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr23:1280545-1280681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
52, 105
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr23:19841023-19841160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 72
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr23:595445-595575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr23:3202209-3202337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr23:18568428-18568297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
5-128
               

               
Cow position:
               
chr23:23444878-23444999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
5-135
               

               
Cow position:
               
chr23:12972413-12972285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
6-131
               

               
Cow position:
               
chr23:31086209-31086334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr24:155754-155643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr24:263855-263743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
1-121
               

               
Cow position:
               
chr24:11920521-11920640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr24:266089-265963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr24:41205518-41205652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 97
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr24:38036973-38036854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
16-135
               

               
Cow position:
               
chr24:31376973-31377092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr25:13799705-13799818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr25:11411342-11411226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
52, 38
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr25:21036705-21036580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr26:5835223-5835104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
4-126
               

               
Cow position:
               
chr26:27937464-27937587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
5-128
               

               
Cow position:
               
chr26:30401565-30401689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
32, 100
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr27:21159018-21158906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
2-82
               

               
Cow position:
               
chr27:17783381-17783462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
82
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr27:20255150-20255019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
19-135
               

               
Cow position:
               
chr27:23087171-23087055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr28:25581275-25581444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr28:6951907-6951783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr28:26251891-26251771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
5-133
               

               
Cow position:
               
chr28:19219899-19220026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
48, 71
               

               
Conread position:
               
8-136
               

               
Cow position:
               
chr28:10570160-10570031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 96
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr29:10625947-10625820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr29:39296114-39295985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr29:1761836-1761711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr29:38263009-38262887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
4-133
               

               
Cow position:
               
chr29:25388770-25388903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr29:39419551-39419420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 96
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr3:8146868-8146991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr3:16574628-16574502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr3:81080677-81080804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr3:45948853-45948724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr3:81222349-81222215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 66
               

               
Conread position:
               
3-109
               

               
Cow position:
               
chr3:11952135-11952238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
3-135
               

               
Cow position:
               
chr3:23178599-23178467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
50, 85
               

               
Conread position:
               
4-123
               

               
Cow position:
               
chr3:25695582-25695465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
26-135
               

               
Cow position:
               
chr3:53211203-53211094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr4:30016871-30016748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr4:43283838-43283968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
3-116
               

               
Cow position:
               
chr4:32773708-32773596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
3-135
               

               
Cow position:
               
chr4:23613064-23613191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr4:54379154-54379279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
21-128
               

               
Cow position:
               
chr4:26617580-26617687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr5:6390793-6390669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
52, 73
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr5:2188665-2188792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr5:43401228-43401099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-113
               

               
Cow position:
               
chr5:25444832-25444722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
4-118
               

               
Cow position:
               
chr5:31486767-31486655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
4-119
               

               
Cow position:
               
chr5:47838036-47837922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr5:47767861-47767731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
108, 82
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr6:55972462-55972590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr6:35187598-35187726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr6:2592777-2592660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr6:417846-417716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
1-100
               

               
Cow position:
               
chr7:2982591-2982690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr7:21038855-21038739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
56, 86
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr7:33444075-33444201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
112, 85
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr7:50741000-50740869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr8:42640868-42640749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr8:23352623-23352757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr8:24959442-24959573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 99
               

               
Conread position:
               
17-135
               

               
Cow position:
               
chr8:848629-848747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr9:55033137-55033266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr9:13453587-13453458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr9:34315117-34315335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
3-135
               

               
Cow position:
               
chr9:20984052-20984185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
4-134
               

               
Cow position:
               
chr9:6317144-6317007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chrX:48058127-48058001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chrX:1340539-1340406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chrX:23364340-23364204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chrX:38739888-38740015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chrX:31908981-31908850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
5-135
               

               
Cow position:
               
chrX:42549700-42549828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 17