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Cow genome map

           
Conread name:
           
rgul0101_g23.y1
        

               
Conread position:
               
1-154
               

               
Cow position:
               
chr1:19145665-19145512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:89492741-89492549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:31352137-31351940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:72285069-72284856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:27494736-27494957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:5013302-5013077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
214, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:43650409-43650183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:100591277-100591034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
215-474
               

               
Cow position:
               
chr1:33206935-33206666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 200
               

               
Conread position:
               
230-473
               

               
Cow position:
               
chr1:78857364-78857120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 154
               

               
Conread position:
               
232-472
               

               
Cow position:
               
chr1:101834784-101835021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr1:64572484-64572719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
236-473
               

               
Cow position:
               
chr1:74832393-74832634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
237-460
               

               
Cow position:
               
chr1:81913179-81912949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
238-470
               

               
Cow position:
               
chr1:101177488-101177726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
63, 146
               

               
Conread position:
               
241-378
               

               
Cow position:
               
chr1:50991908-50992050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
241-464
               

               
Cow position:
               
chr1:98511903-98512134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
241-470
               

               
Cow position:
               
chr1:99221375-99221139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
131, 210
               

               
Conread position:
               
241-470
               

               
Cow position:
               
chr1:100474209-100474442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 144
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr1:3965812-3966034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr1:8287654-8287425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr1:22192745-22192975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 143
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr1:46030936-46031166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 145
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr1:77739697-77739930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr1:24778013-24777783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr1:65318551-65318778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr1:82337800-82337579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr1:95835821-95835594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 142
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr1:30189126-30189362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr1:34771527-34771294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr1:43352678-43352448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr1:48214178-48213939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr1:91023489-91023262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr1:38419004-38419232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr1:50930997-50930775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
243-475
               

               
Cow position:
               
chr1:38706877-38706645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
244-470
               

               
Cow position:
               
chr1:98897716-98897487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 155
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr1:45478879-45478735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
251-468
               

               
Cow position:
               
chr1:28563580-28563360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
252-468
               

               
Cow position:
               
chr1:6381759-6381977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
254-472
               

               
Cow position:
               
chr1:24133071-24132858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
52, 127
               

               
Conread position:
               
254-473
               

               
Cow position:
               
chr1:45315647-45315425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 130
               

               
Conread position:
               
264-472
               

               
Cow position:
               
chr1:96518696-96518907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
269-468
               

               
Cow position:
               
chr1:95049860-95049664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr1:75744901-75745065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr10:30720216-30720412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr10:24293434-24293235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr10:43489148-43489350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr10:65790781-65790579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr10:46226340-46226554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 207
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr10:34661002-34660788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr10:38941640-38941865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 221
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr10:22320740-22320963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr10:8094114-8093889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr10:37041516-37041740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr10:9798997-9798749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
204-473
               

               
Cow position:
               
chr10:60491356-60491087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
215-467
               

               
Cow position:
               
chr10:18042092-18042352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
15, 175
               

               
Conread position:
               
231-472
               

               
Cow position:
               
chr10:705059-704812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
235-390
               

               
Cow position:
               
chr10:15115553-15115715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr10:42230734-42230980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr10:54504547-54504779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr10:45379062-45378826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 147
               

               
Conread position:
               
241-375
               

               
Cow position:
               
chr10:23936426-23936561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
241-436
               

               
Cow position:
               
chr10:33084490-33084299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
242-466
               

               
Cow position:
               
chr10:52296444-52296665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr10:13586651-13586878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 201
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr10:43273098-43272866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 158
               

               
Conread position:
               
243-395
               

               
Cow position:
               
chr10:47651247-47651403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr10:24831135-24830896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 151
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr10:60960882-60961121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr10:38995176-38995411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 161
               

               
Conread position:
               
244-468
               

               
Cow position:
               
chr10:50042556-50042789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 42
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr10:47690336-47690572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr10:48316998-48316769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 143
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr10:62286505-62286740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chr10:5151295-5151528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
245-438
               

               
Cow position:
               
chr10:13197882-13197685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 148
               

               
Conread position:
               
246-473
               

               
Cow position:
               
chr10:13311687-13311920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 20
               

               
Conread position:
               
248-464
               

               
Cow position:
               
chr10:54848735-54848944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
193, 129
               

               
Conread position:
               
248-472
               

               
Cow position:
               
chr10:23128033-23127806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 136
               

               
Conread position:
               
251-471
               

               
Cow position:
               
chr10:24871121-24871345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
252-468
               

               
Cow position:
               
chr10:4184153-4184374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr10:58149161-58148999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr10:19679107-19679280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
141, 77
               

               
Conread position:
               
302-472
               

               
Cow position:
               
chr10:58066178-58066013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr11:4060794-4060634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr11:17863014-17862824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr11:40133641-40133416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
209-437
               

               
Cow position:
               
chr11:372785-372559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
214-470
               

               
Cow position:
               
chr11:62742717-62742467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr11:69977918-69978148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 52
               

               
Conread position:
               
236-473
               

               
Cow position:
               
chr11:2084090-2084331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr11:66572547-66572309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr11:61454564-61454320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
239-471
               

               
Cow position:
               
chr11:4207261-4207493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr11:6233927-6233695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 143
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr11:15772760-15772529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 138
               

               
Conread position:
               
242-383
               

               
Cow position:
               
chr11:83230447-83230302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-390
               

               
Cow position:
               
chr11:22747374-22747224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
242-467
               

               
Cow position:
               
chr11:80564246-80564475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr11:46998934-46999165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr11:62789083-62789311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
243-378
               

               
Cow position:
               
chr11:7590146-7590282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr11:63999134-63998906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
9, 134
               

               
Conread position:
               
244-404
               

               
Cow position:
               
chr11:36658864-36658702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
245-468
               

               
Cow position:
               
chr11:21844176-21843960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
248-472
               

               
Cow position:
               
chr11:66188357-66188138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 119
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr11:53778579-53778803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
251-474
               

               
Cow position:
               
chr11:53717844-53717606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 188
               

               
Conread position:
               
261-468
               

               
Cow position:
               
chr11:8437721-8437511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 185
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr11:67312796-67312964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 144
               

               
Conread position:
               
304-471
               

               
Cow position:
               
chr11:49210802-49210635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
137, 62
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr12:24205972-24206081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr12:33297072-33297283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr12:20479416-20479183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
236-468
               

               
Cow position:
               
chr12:33851286-33851513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
239-473
               

               
Cow position:
               
chr12:26750024-26749788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 155
               

               
Conread position:
               
239-474
               

               
Cow position:
               
chr12:45168090-45167845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr12:30919356-30919595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr12:23836263-23836491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr12:29966039-29966266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr12:38774309-38774084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
243-460
               

               
Cow position:
               
chr12:31532466-31532260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
244-467
               

               
Cow position:
               
chr12:8943289-8943059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr12:4596396-4596634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
8, 147
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr12:6241253-6241485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 141
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr12:33976134-33976364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chr12:7110132-7110370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
57, 140
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr12:4797235-4797385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
252-440
               

               
Cow position:
               
chr12:42181186-42181001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 129
               

               
Conread position:
               
273-472
               

               
Cow position:
               
chr12:25456376-25456582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
293-472
               

               
Cow position:
               
chr12:3454681-3454858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr12:583515-583343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
140, 106
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr13:12572210-12572034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr13:16270729-16270531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr13:7365688-7365901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr13:46428172-46428393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr13:41807505-41807284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
231-462
               

               
Cow position:
               
chr13:38872919-38873160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
235-472
               

               
Cow position:
               
chr13:15997056-15996823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr13:52055573-52055806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
63, 5
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr13:46516079-46515846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 160
               

               
Conread position:
               
239-472
               

               
Cow position:
               
chr13:14063503-14063734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr13:6183404-6183644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr13:37621345-37621587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr13:45023197-45023435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr13:62008122-62007894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
243-458
               

               
Cow position:
               
chr13:15083673-15083462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
243-468
               

               
Cow position:
               
chr13:20271212-20271440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr13:9265816-9266061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr13:13775230-13775466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr13:15192874-15193102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
9, 140
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr13:25941250-25941475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr13:13089039-13088818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
9, 128
               

               
Conread position:
               
244-468
               

               
Cow position:
               
chr13:6926529-6926303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
34, 154
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr13:7076268-7076027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr13:18166745-18166519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 141
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chr13:37592933-37593160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 150
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr13:21127329-21127554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 136
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr13:42200631-42200407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 140
               

               
Conread position:
               
251-468
               

               
Cow position:
               
chr13:6486246-6486462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
251-468
               

               
Cow position:
               
chr13:16908222-16908004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr13:32017507-32017729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
261-468
               

               
Cow position:
               
chr13:19022265-19022055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
265-468
               

               
Cow position:
               
chr13:9900143-9899937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
266-476
               

               
Cow position:
               
chr13:53619987-53619783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
175, 28
               

               
Conread position:
               
278-473
               

               
Cow position:
               
chr13:6113552-6113746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr13:37803844-37803670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr13:14544088-14543922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr13:17619844-17619665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
304-473
               

               
Cow position:
               
chr13:28081670-28081502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
305-472
               

               
Cow position:
               
chr13:26422998-26422824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
306-472
               

               
Cow position:
               
chr13:18215312-18215145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 70
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr14:23259818-23259626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr14:27844432-27844657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 0
               

               
Conread position:
               
215-472
               

               
Cow position:
               
chr14:8949733-8949494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
226, 18
               

               
Conread position:
               
225-473
               

               
Cow position:
               
chr14:20467019-20466777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 15
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr14:20110643-20110879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 150
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr14:11643179-11643403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
239-473
               

               
Cow position:
               
chr14:12033166-12033403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
241-442
               

               
Cow position:
               
chr14:7695339-7695138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
241-470
               

               
Cow position:
               
chr14:42439839-42440076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr14:21357629-21357400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
242-371
               

               
Cow position:
               
chr14:33644029-33643898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr14:38144038-38144267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr14:4848417-4848192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 140
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr14:10078339-10078096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
245-468
               

               
Cow position:
               
chr14:11056665-11056886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
66, 142
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr14:22941666-22941897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
266-472
               

               
Cow position:
               
chr14:38747718-38747522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
299-468
               

               
Cow position:
               
chr14:20071081-20070909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 124
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr14:32784106-32784275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
140, 76
               

               
Conread position:
               
306-472
               

               
Cow position:
               
chr14:36151328-36151167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
135, 74
               

               
Conread position:
               
311-475
               

               
Cow position:
               
chr14:47200126-47200294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr15:6367382-6367244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
224-472
               

               
Cow position:
               
chr15:29604563-29604833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
230-468
               

               
Cow position:
               
chr15:17162328-17162072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
235-472
               

               
Cow position:
               
chr15:15154425-15154189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 123
               

               
Conread position:
               
236-468
               

               
Cow position:
               
chr15:21803538-21803771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 5
               

               
Conread position:
               
236-471
               

               
Cow position:
               
chr15:26158474-26158708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 146
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr15:25208633-25208869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 162
               

               
Conread position:
               
236-473
               

               
Cow position:
               
chr15:30470848-30471090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
65, 158
               

               
Conread position:
               
237-466
               

               
Cow position:
               
chr15:22553419-22553645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 146
               

               
Conread position:
               
238-390
               

               
Cow position:
               
chr15:14176376-14176534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
238-400
               

               
Cow position:
               
chr15:38827201-38827367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 147
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr15:29810242-29810015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 126
               

               
Conread position:
               
238-473
               

               
Cow position:
               
chr15:30047427-30047665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
241-380
               

               
Cow position:
               
chr15:20422662-20422802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr15:26911956-26912178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
242-383
               

               
Cow position:
               
chr15:29331119-29330979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr15:28823695-28823922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr15:47843974-47844198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 142
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr15:20950371-20950142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr15:41527858-41528076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 144
               

               
Conread position:
               
244-459
               

               
Cow position:
               
chr15:34207077-34207299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr15:35440966-35441113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
246-400
               

               
Cow position:
               
chr15:30982054-30981899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
6, 135
               

               
Conread position:
               
248-470
               

               
Cow position:
               
chr15:5726437-5726207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
53, 204
               

               
Conread position:
               
272-473
               

               
Cow position:
               
chr15:44089080-44089276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
273-473
               

               
Cow position:
               
chr15:8665517-8665718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
290-475
               

               
Cow position:
               
chr15:21520214-21520029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
299-468
               

               
Cow position:
               
chr15:14868483-14868652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
100, 145
               

               
Conread position:
               
300-475
               

               
Cow position:
               
chr15:27975815-27975986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
141, 80
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr15:2931516-2931681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr15:35577254-35577083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 131
               

               
Conread position:
               
306-472
               

               
Cow position:
               
chr15:28099162-28099001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
137, 70
               

               
Conread position:
               
328-472
               

               
Cow position:
               
chr15:19742489-19742347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr16:600180-600362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr16:7701528-7701732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr16:16177048-16177250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr16:54322650-54322425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
231-471
               

               
Cow position:
               
chr16:21370228-21369991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
237-466
               

               
Cow position:
               
chr16:29037883-29038111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr16:9905055-9905297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 140
               

               
Conread position:
               
238-468
               

               
Cow position:
               
chr16:42444123-42444356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 141
               

               
Conread position:
               
241-461
               

               
Cow position:
               
chr16:42539618-42539393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
241-469
               

               
Cow position:
               
chr16:7665608-7665837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
241-471
               

               
Cow position:
               
chr16:30174557-30174322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr16:46548298-46548062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr16:13306900-13306671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr16:56796695-56796454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr16:33198466-33198232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr16:23955860-23955631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr16:11390313-11390074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
245-464
               

               
Cow position:
               
chr16:15905277-15905052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
246-463
               

               
Cow position:
               
chr16:31348789-31348571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 79
               

               
Conread position:
               
248-468
               

               
Cow position:
               
chr16:8673631-8673414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
248-468
               

               
Cow position:
               
chr16:29026186-29026409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 199
               

               
Conread position:
               
251-399
               

               
Cow position:
               
chr16:28396100-28395949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
261-472
               

               
Cow position:
               
chr16:12220672-12220886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
262-472
               

               
Cow position:
               
chr16:24142966-24142752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr16:56670886-56670714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
302-472
               

               
Cow position:
               
chr16:12091627-12091452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
304-452
               

               
Cow position:
               
chr16:23187582-23187733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr16:13791641-13791808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr16:14006081-14005902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
309-472
               

               
Cow position:
               
chr16:21974921-21974758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr17:22563464-22563662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 124
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr17:1568901-1568677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
236-468
               

               
Cow position:
               
chr17:20993032-20992802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr17:18934267-18934497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 153
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr17:20884530-20884765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
239-468
               

               
Cow position:
               
chr17:11912496-11912269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
6, 146
               

               
Conread position:
               
241-460
               

               
Cow position:
               
chr17:11224115-11224338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
141, 75
               

               
Conread position:
               
241-467
               

               
Cow position:
               
chr17:40771846-40772065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
241-469
               

               
Cow position:
               
chr17:5900381-5900618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr17:30728515-30728748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr17:7810744-7810506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr17:36814372-36814605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
242-474
               

               
Cow position:
               
chr17:27440187-27440418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 134
               

               
Conread position:
               
243-470
               

               
Cow position:
               
chr17:26230966-26231203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr17:5011850-5012081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 150
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr17:21806440-21806209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
243-476
               

               
Cow position:
               
chr17:32419104-32418873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
243-476
               

               
Cow position:
               
chr17:36791148-36791368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
244-388
               

               
Cow position:
               
chr17:9911773-9911918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 63
               

               
Conread position:
               
244-458
               

               
Cow position:
               
chr17:949988-950201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
8, 138
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr17:1562767-1562551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr17:25189303-25189527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chr17:21039570-21039797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
246-473
               

               
Cow position:
               
chr17:21325347-21325585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr17:27058536-27058309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
252-472
               

               
Cow position:
               
chr17:20848545-20848768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
46, 138
               

               
Conread position:
               
262-472
               

               
Cow position:
               
chr17:21466231-21466018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
22, 118
               

               
Conread position:
               
262-473
               

               
Cow position:
               
chr17:32333059-32332851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
299-468
               

               
Cow position:
               
chr17:5344690-5344855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
300-471
               

               
Cow position:
               
chr17:25139336-25139514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr17:21718923-21718756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
301-472
               

               
Cow position:
               
chr17:13297455-13297625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
304-471
               

               
Cow position:
               
chr17:9078143-9077974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
106, 90
               

               
Conread position:
               
304-473
               

               
Cow position:
               
chr17:24895151-24895318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
305-473
               

               
Cow position:
               
chr17:3467831-3467992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
125, 75
               

               
Conread position:
               
313-473
               

               
Cow position:
               
chr17:35051701-35051861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
128, 67
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr18:51679665-51679484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr18:51692277-51692077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:2609521-2609312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr18:37692742-37692532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr18:2853245-2853017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chr18:50225141-50224946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
26-226
               

               
Cow position:
               
chr18:48300896-48300701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
230-400
               

               
Cow position:
               
chr18:35367268-35367094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr18:30341255-30341016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
235-473
               

               
Cow position:
               
chr18:42479656-42479413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
17, 150
               

               
Conread position:
               
237-468
               

               
Cow position:
               
chr18:35889163-35888926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 65
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr18:52251926-52251688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 149
               

               
Conread position:
               
238-448
               

               
Cow position:
               
chr18:48961867-48962079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr18:23162826-23163060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr18:37023620-37023371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
238-475
               

               
Cow position:
               
chr18:2592231-2591991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 163
               

               
Conread position:
               
239-468
               

               
Cow position:
               
chr18:9066632-9066862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
241-384
               

               
Cow position:
               
chr18:56172074-56171930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr18:31557224-31556990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 152
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr18:49038398-49038621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 144
               

               
Conread position:
               
242-475
               

               
Cow position:
               
chr18:17391056-17390821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
243-400
               

               
Cow position:
               
chr18:30586283-30586128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr18:3211816-3212046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
244-468
               

               
Cow position:
               
chr18:33158882-33159105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
246-473
               

               
Cow position:
               
chr18:1954648-1954413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
6, 180
               

               
Conread position:
               
246-473
               

               
Cow position:
               
chr18:4556225-4555997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 157
               

               
Conread position:
               
248-471
               

               
Cow position:
               
chr18:18369415-18369184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 163
               

               
Conread position:
               
251-468
               

               
Cow position:
               
chr18:4851530-4851323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
272-472
               

               
Cow position:
               
chr18:41702805-41703000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr18:19962144-19961974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
85, 100
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr18:41724818-41724652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr18:12270501-12270679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
300-475
               

               
Cow position:
               
chr18:33896418-33896245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
302-471
               

               
Cow position:
               
chr18:2776893-2776725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 75
               

               
Conread position:
               
304-471
               

               
Cow position:
               
chr18:2773388-2773222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
137, 76
               

               
Conread position:
               
306-471
               

               
Cow position:
               
chr18:35454663-35454489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr19:15842926-15842718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr19:9543157-9542946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr19:42241074-42240847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
57, 207
               

               
Conread position:
               
223-468
               

               
Cow position:
               
chr19:43372975-43373232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr19:11194819-11194576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 155
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr19:41024178-41024409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 142
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr19:47453386-47453624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 148
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr19:49290498-49290270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
239-400
               

               
Cow position:
               
chr19:15092176-15092011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr19:7637276-7637051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr19:23304529-23304305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 141
               

               
Conread position:
               
241-471
               

               
Cow position:
               
chr19:4987807-4987579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 142
               

               
Conread position:
               
241-471
               

               
Cow position:
               
chr19:23378635-23378864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 143
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr19:729784-729560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr19:43058493-43058726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
242-371
               

               
Cow position:
               
chr19:43441128-43441261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr19:34166330-34166552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
242-469
               

               
Cow position:
               
chr19:32506160-32505923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 174
               

               
Conread position:
               
242-469
               

               
Cow position:
               
chr19:34758043-34757807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
10, 173
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr19:2221116-2220885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 151
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr19:17354817-17355048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr19:26269269-26269036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
243-441
               

               
Cow position:
               
chr19:1664230-1664028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 145
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr19:15887360-15887128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr19:21199099-21199339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr19:26167951-26167727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 134
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr19:30007153-30007373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr19:12698282-12698505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 153
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr19:47185119-47184892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr19:53378663-53378888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
245-473
               

               
Cow position:
               
chr19:24956275-24956054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
7, 127
               

               
Conread position:
               
246-473
               

               
Cow position:
               
chr19:4587775-4587539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
6, 43
               

               
Conread position:
               
261-459
               

               
Cow position:
               
chr19:41584948-41585147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
264-473
               

               
Cow position:
               
chr19:44572065-44572277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 24
               

               
Conread position:
               
273-474
               

               
Cow position:
               
chr19:30227515-30227712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr19:15076179-15076007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 111
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr19:14421915-14421740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
95, 54
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr19:2358093-2358267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
106, 38
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr19:53189833-53189661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
138, 80
               

               
Conread position:
               
304-468
               

               
Cow position:
               
chr19:51637066-51637229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
139, 70
               

               
Conread position:
               
310-475
               

               
Cow position:
               
chr19:13766128-13765956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr2:38207030-38206846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr2:70933958-70933750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr2:76341434-76341209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr2:79978098-79977876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
208-472
               

               
Cow position:
               
chr2:40728282-40728559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
231-468
               

               
Cow position:
               
chr2:21380443-21380208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
232-472
               

               
Cow position:
               
chr2:43990734-43990970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 151
               

               
Conread position:
               
237-471
               

               
Cow position:
               
chr2:21382884-21382650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
15, 142
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr2:84480537-84480299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
15, 150
               

               
Conread position:
               
238-470
               

               
Cow position:
               
chr2:39663344-39663576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
239-468
               

               
Cow position:
               
chr2:46124732-46124492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
241-390
               

               
Cow position:
               
chr2:80963675-80963526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr2:45623984-45624227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
241-470
               

               
Cow position:
               
chr2:77941697-77941475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 93
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr2:44197852-44198080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr2:68328884-68328652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
242-408
               

               
Cow position:
               
chr2:85496360-85496194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr2:19494185-19494414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr2:76861485-76861251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
243-438
               

               
Cow position:
               
chr2:26806141-26805946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
243-468
               

               
Cow position:
               
chr2:73353766-73354002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 174
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr2:19137918-19137691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
244-415
               

               
Cow position:
               
chr2:6697522-6697359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr2:387803-387576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 132
               

               
Conread position:
               
248-468
               

               
Cow position:
               
chr2:16505499-16505274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
14, 127
               

               
Conread position:
               
248-468
               

               
Cow position:
               
chr2:80275315-80275097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 135
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr2:30954615-30954393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
251-473
               

               
Cow position:
               
chr2:54967989-54968210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
261-473
               

               
Cow position:
               
chr2:43591382-43591173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
261-473
               

               
Cow position:
               
chr2:44051302-44051509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 114
               

               
Conread position:
               
273-468
               

               
Cow position:
               
chr2:39363009-39363205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
273-472
               

               
Cow position:
               
chr2:29395002-29394806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
168, 109
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr2:37891457-37891282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 87
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr2:66629222-66629401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 80
               

               
Conread position:
               
300-475
               

               
Cow position:
               
chr2:17942987-17942809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
306-472
               

               
Cow position:
               
chr2:21950015-21950172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
156, 73
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr20:34597849-34597631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
87, 155
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr20:20983991-20984239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
15, 182
               

               
Conread position:
               
241-390
               

               
Cow position:
               
chr20:10818228-10818074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr20:6054496-6054265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
54, 143
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr20:34097943-34097706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 146
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr20:16941273-16941039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
51, 149
               

               
Conread position:
               
242-475
               

               
Cow position:
               
chr20:5078640-5078881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr20:24711854-24712082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 145
               

               
Conread position:
               
248-472
               

               
Cow position:
               
chr20:5364950-5365170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
200, 132
               

               
Conread position:
               
252-456
               

               
Cow position:
               
chr20:12085409-12085204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 190
               

               
Conread position:
               
254-473
               

               
Cow position:
               
chr20:15529887-15530103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
273-472
               

               
Cow position:
               
chr20:37357907-37358101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
169, 20
               

               
Conread position:
               
280-472
               

               
Cow position:
               
chr20:297952-297762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
163, 110
               

               
Conread position:
               
301-472
               

               
Cow position:
               
chr20:21721287-21721462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
305-469
               

               
Cow position:
               
chr20:23880026-23879867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr21:31275964-31276099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr21:16768501-16768307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr21:744082-743876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr21:31512649-31512425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
211-472
               

               
Cow position:
               
chr21:13585059-13584789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
236-471
               

               
Cow position:
               
chr21:28733884-28733650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 166
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr21:47073-47306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
241-469
               

               
Cow position:
               
chr21:23672784-23673005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
200, 10
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr21:6051536-6051768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 144
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr21:47713971-47713745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 114
               

               
Conread position:
               
242-391
               

               
Cow position:
               
chr21:13365377-13365530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr21:8545984-8545756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr21:40266159-40266387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 113
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr21:868890-868655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr21:9418121-9417880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-478
               

               
Cow position:
               
chr21:11644932-11644696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 157
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr21:27569130-27568895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
142, 9
               

               
Conread position:
               
246-466
               

               
Cow position:
               
chr21:20160714-20160935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
6, 139
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chr21:10004847-10004620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 138
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr21:27744121-27744292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
6, 75
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr21:8986122-8986289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 76
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr22:18233320-18233511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
141, 86
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr22:11837977-11837770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 174
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr22:5624194-5623970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr22:37323712-37323943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
163, 175
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr22:18807785-18807549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
234-472
               

               
Cow position:
               
chr22:34618757-34619005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
238-468
               

               
Cow position:
               
chr22:16621139-16621384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
239-472
               

               
Cow position:
               
chr22:1326385-1326614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr22:12157877-12157657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 47
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr22:7164929-7165164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 208
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr22:9372488-9372722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr22:12573179-12573401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
35, 40
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr22:10339148-10338910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-477
               

               
Cow position:
               
chr22:43397969-43398200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr22:34616275-34616511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr22:6176317-6176085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr22:36433002-36432776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 139
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr22:12188511-12188278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr22:12195598-12195364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr22:18926325-18926552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
8, 141
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr22:33399518-33399293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr22:11352481-11352250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr22:14691001-14690763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
246-473
               

               
Cow position:
               
chr22:1659135-1659364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
315-472
               

               
Cow position:
               
chr22:33373283-33373439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 92
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr23:26230572-26230776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
211-440
               

               
Cow position:
               
chr23:4327756-4327523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
223-473
               

               
Cow position:
               
chr23:1760889-1760630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr23:37065818-37066058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
45, 147
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr23:4726766-4726994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr23:8698393-8698628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 140
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr23:16780576-16780358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
199, 20
               

               
Conread position:
               
242-474
               

               
Cow position:
               
chr23:22298060-22297826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
143, 62
               

               
Conread position:
               
243-460
               

               
Cow position:
               
chr23:24701106-24700886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr23:11081230-11081460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
243-477
               

               
Cow position:
               
chr23:38455205-38454956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
248-466
               

               
Cow position:
               
chr23:22238842-22238624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 132
               

               
Conread position:
               
261-473
               

               
Cow position:
               
chr23:26986278-26986069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
264-471
               

               
Cow position:
               
chr23:27848992-27849194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
282-472
               

               
Cow position:
               
chr23:35929970-35930150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
283-475
               

               
Cow position:
               
chr23:24718783-24718598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 97
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr23:1480675-1480840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
141, 80
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr23:19179335-19179167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
137, 76
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr24:17105341-17105143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr24:24249928-24250132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr24:29064434-29064234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr24:17309890-17309681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr24:39441582-39441363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
211-472
               

               
Cow position:
               
chr24:41405804-41406069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr24:27284762-27284999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr24:17104624-17104401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 143
               

               
Conread position:
               
242-460
               

               
Cow position:
               
chr24:18741626-18741402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr24:11028738-11028512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr24:34896752-34896526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr24:23667171-23666950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 132
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr24:38006760-38006537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 57
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr24:28470731-28470492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 43
               

               
Conread position:
               
246-470
               

               
Cow position:
               
chr24:33944352-33944579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
251-468
               

               
Cow position:
               
chr24:42726406-42726629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
261-473
               

               
Cow position:
               
chr24:30235839-30236048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 123
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr24:24091331-24091158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
77, 96
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr24:17689598-17689436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr25:26353553-26353358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr25:11662553-11662327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 154
               

               
Conread position:
               
235-390
               

               
Cow position:
               
chr25:30656685-30656527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
236-460
               

               
Cow position:
               
chr25:13443449-13443222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
237-470
               

               
Cow position:
               
chr25:7007876-7008115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 149
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr25:16921830-16921596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 144
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr25:19478642-19478887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr25:30619032-30619266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 208
               

               
Conread position:
               
242-465
               

               
Cow position:
               
chr25:10504368-10504145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
199, 138
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr25:1824129-1823894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 145
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr25:13272538-13272766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr25:9843144-9843379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 149
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr25:22348495-22348260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 143
               

               
Conread position:
               
242-474
               

               
Cow position:
               
chr25:4521869-4521642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 139
               

               
Conread position:
               
242-478
               

               
Cow position:
               
chr25:6683094-6682847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
243-460
               

               
Cow position:
               
chr25:20461076-20461301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 112
               

               
Conread position:
               
243-466
               

               
Cow position:
               
chr25:26072587-26072372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
205, 137
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr25:11585488-11585726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
245-471
               

               
Cow position:
               
chr25:28597641-28597408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
10, 181
               

               
Conread position:
               
248-390
               

               
Cow position:
               
chr25:5920056-5920203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
250-473
               

               
Cow position:
               
chr25:433071-432850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 142
               

               
Conread position:
               
251-473
               

               
Cow position:
               
chr25:3744768-3744536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 134
               

               
Conread position:
               
261-472
               

               
Cow position:
               
chr25:30625095-30624872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 195
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr25:12609375-12609540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
84, 92
               

               
Conread position:
               
305-473
               

               
Cow position:
               
chr25:15305714-15305878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
136, 49
               

               
Conread position:
               
211-462
               

               
Cow position:
               
chr26:29889551-29889309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
239-472
               

               
Cow position:
               
chr26:32831590-32831361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr26:33253328-33253101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
242-375
               

               
Cow position:
               
chr26:26466741-26466607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr26:11672284-11672515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 151
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr26:4807546-4807773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
201, 138
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr26:32834589-32834358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr26:14175269-14175510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 212
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr26:20291704-20291476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
242-475
               

               
Cow position:
               
chr26:20769838-20770069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
243-389
               

               
Cow position:
               
chr26:20551136-20551282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
243-475
               

               
Cow position:
               
chr26:24453919-24453689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 194
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr26:34060324-34060551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chr26:647732-647507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 130
               

               
Conread position:
               
261-468
               

               
Cow position:
               
chr26:16796199-16796001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
180, 116
               

               
Conread position:
               
261-472
               

               
Cow position:
               
chr26:12145111-12144901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
274-460
               

               
Cow position:
               
chr26:9501733-9501913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
211-472
               

               
Cow position:
               
chr27:7412410-7412150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 174
               

               
Conread position:
               
235-441
               

               
Cow position:
               
chr27:6674271-6674058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 53
               

               
Conread position:
               
236-468
               

               
Cow position:
               
chr27:25152076-25151850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
149, 98
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr27:4720123-4720369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 218
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr27:5553461-5553229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 150
               

               
Conread position:
               
237-455
               

               
Cow position:
               
chr27:1768634-1768843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
241-459
               

               
Cow position:
               
chr27:26188815-26188597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
241-471
               

               
Cow position:
               
chr27:18558344-18558116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr27:16103793-16103567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
200, 101
               

               
Conread position:
               
242-378
               

               
Cow position:
               
chr27:31017844-31017980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
242-415
               

               
Cow position:
               
chr27:30489424-30489603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr27:29319396-29319166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 56
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr27:2592528-2592294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
59, 143
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr27:6550443-6550217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr27:19508999-19508769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 143
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr27:30868754-30868994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 125
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr27:31170078-31170315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr27:20514801-20514582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
261-467
               

               
Cow position:
               
chr27:15378513-15378719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
264-471
               

               
Cow position:
               
chr27:19717878-19717656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
267-472
               

               
Cow position:
               
chr27:24303907-24303700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr28:13692968-13693146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr28:25804360-25804553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr28:13889506-13889304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr28:17314884-17315108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr28:11787470-11787248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
211-472
               

               
Cow position:
               
chr28:4881300-4881045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
230-473
               

               
Cow position:
               
chr28:11828989-11828754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
237-389
               

               
Cow position:
               
chr28:19026035-19025877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr28:3726240-3726003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 152
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr28:20759730-20759489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 100
               

               
Conread position:
               
241-471
               

               
Cow position:
               
chr28:18770059-18770290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
135, 204
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr28:7698004-7697775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr28:21868431-21868662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
242-475
               

               
Cow position:
               
chr28:17739801-17740032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
64, 139
               

               
Conread position:
               
243-461
               

               
Cow position:
               
chr28:4045825-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr28:27161350-27161112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr28:9636481-9636252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 142
               

               
Conread position:
               
254-472
               

               
Cow position:
               
chr28:10977829-10978042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 114
               

               
Conread position:
               
261-473
               

               
Cow position:
               
chr28:4158950-4159169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
261-473
               

               
Cow position:
               
chr28:5805666-5805867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
269-467
               

               
Cow position:
               
chr28:28501236-28501440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 104
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr28:16200701-16200536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
137, 84
               

               
Conread position:
               
304-473
               

               
Cow position:
               
chr28:29500442-29500612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
139, 76
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr29:30270393-30270175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
149, 213
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr29:35076584-35076815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 126
               

               
Conread position:
               
215-468
               

               
Cow position:
               
chr29:9310545-9310797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
230-470
               

               
Cow position:
               
chr29:1011624-1011397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr29:17297098-17297336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
237-369
               

               
Cow position:
               
chr29:10235166-10235034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr29:29057146-29057377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr29:5520518-5520285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr29:4070596-4070814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr29:41530819-41531049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 116
               

               
Conread position:
               
243-471
               

               
Cow position:
               
chr29:13028413-13028647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr29:1325412-1325644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr29:32799735-32799505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 33
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr29:17109929-17110152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
243-478
               

               
Cow position:
               
chr29:36357098-36357331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 139
               

               
Conread position:
               
254-469
               

               
Cow position:
               
chr29:34760432-34760206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
254-473
               

               
Cow position:
               
chr29:19949290-19949504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
299-471
               

               
Cow position:
               
chr29:35737298-35737120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr29:26631072-26631247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr29:936237-936402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr29:28949005-28949184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr3:48269068-48269268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:36571062-36570847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
103, 168
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr3:2537468-2537679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr3:14438614-14438390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr3:32619638-32619414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr3:18759033-18758804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
12, 53
               

               
Conread position:
               
211-468
               

               
Cow position:
               
chr3:54100813-54100542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
211-472
               

               
Cow position:
               
chr3:48468090-48468351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
211-472
               

               
Cow position:
               
chr3:71231306-71231573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
223-463
               

               
Cow position:
               
chr3:57273984-57274224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
230-390
               

               
Cow position:
               
chr3:73299014-73299177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
230-470
               

               
Cow position:
               
chr3:48810713-48810465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 153
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr3:45881831-45882074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 156
               

               
Conread position:
               
235-474
               

               
Cow position:
               
chr3:37041359-37041593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
66, 163
               

               
Conread position:
               
237-467
               

               
Cow position:
               
chr3:7661798-7662027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
205, 143
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr3:3316873-3316632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr3:81087694-81087460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 144
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr3:53739243-53739007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 143
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr3:3656460-3656690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 144
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr3:15443782-15443551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr3:65058645-65058874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
242-400
               

               
Cow position:
               
chr3:56476628-56476792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr3:78945885-78945646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr3:47753172-47753413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
243-460
               

               
Cow position:
               
chr3:53046712-53046495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
243-467
               

               
Cow position:
               
chr3:10668932-10668709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
243-470
               

               
Cow position:
               
chr3:65236971-65237196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr3:48900383-48900155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
29, 8
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr3:59604793-59605018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
244-400
               

               
Cow position:
               
chr3:10026737-10026583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 50
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chr3:9120797-9121018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
246-389
               

               
Cow position:
               
chr3:27940188-27940046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 40
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chr3:22165465-22165240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 138
               

               
Conread position:
               
248-468
               

               
Cow position:
               
chr3:71497185-71496958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
248-472
               

               
Cow position:
               
chr3:62046617-62046846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
254-472
               

               
Cow position:
               
chr3:5305757-5305978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 195
               

               
Conread position:
               
261-476
               

               
Cow position:
               
chr3:70762154-70761944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
40, 124
               

               
Conread position:
               
288-472
               

               
Cow position:
               
chr3:68094140-68094327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
6, 159
               

               
Conread position:
               
292-473
               

               
Cow position:
               
chr3:29234680-29234502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
150, 88
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr3:21959668-21959840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
141, 76
               

               
Conread position:
               
304-473
               

               
Cow position:
               
chr3:83474758-83474930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr4:53544640-53544780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr4:53316858-53316662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr4:61625406-61625208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr4:39457848-39458068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr4:14142504-14142737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
200-400
               

               
Cow position:
               
chr4:3268437-3268237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
211-471
               

               
Cow position:
               
chr4:2099561-2099822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
217-371
               

               
Cow position:
               
chr4:22196271-22196118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr4:12004169-12004376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 151
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr4:22073371-22073126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
238-390
               

               
Cow position:
               
chr4:65650171-65650018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
239-475
               

               
Cow position:
               
chr4:54927480-54927236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr4:51769070-51769296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr4:34630861-34631099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 147
               

               
Conread position:
               
242-441
               

               
Cow position:
               
chr4:45775375-45775172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
242-448
               

               
Cow position:
               
chr4:36893322-36893533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
242-466
               

               
Cow position:
               
chr4:45706007-45706222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
242-467
               

               
Cow position:
               
chr4:19408034-19407805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr4:26012360-26012599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 97
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr4:26830666-26830905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 97
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr4:12591251-12591029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr4:59002176-59001946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
243-460
               

               
Cow position:
               
chr4:28753597-28753806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
243-467
               

               
Cow position:
               
chr4:23509560-23509777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
243-468
               

               
Cow position:
               
chr4:13222220-13221993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
243-468
               

               
Cow position:
               
chr4:19501127-19500901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr4:19584680-19584905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr4:19431732-19431498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 128
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr4:45636131-45636363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 62
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chr4:65919576-65919810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
244-475
               

               
Cow position:
               
chr4:54524374-54524136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
245-466
               

               
Cow position:
               
chr4:29805404-29805184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
7, 136
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chr4:37675585-37675818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
248-472
               

               
Cow position:
               
chr4:37313140-37313358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
251-468
               

               
Cow position:
               
chr4:54191063-54191289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
37, 180
               

               
Conread position:
               
253-399
               

               
Cow position:
               
chr4:34983521-34983371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
276-472
               

               
Cow position:
               
chr4:23807951-23808150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
106, 175
               

               
Conread position:
               
294-472
               

               
Cow position:
               
chr4:46656148-46656325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 101
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr4:39010074-39010244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 72
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr4:62794338-62794165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 80
               

               
Conread position:
               
304-471
               

               
Cow position:
               
chr4:5132363-5132535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
304-473
               

               
Cow position:
               
chr4:501653-501478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr5:73069516-73069656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr5:5924698-5924508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr5:14551322-14551122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr5:52041210-52040998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr5:50599336-50599563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
230-378
               

               
Cow position:
               
chr5:4710170-4710015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
230-470
               

               
Cow position:
               
chr5:30276674-30276911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 155
               

               
Conread position:
               
236-471
               

               
Cow position:
               
chr5:68537674-68537439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr5:5855851-5856086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
236-472
               

               
Cow position:
               
chr5:19752297-19752527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
237-389
               

               
Cow position:
               
chr5:63987453-63987298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
237-471
               

               
Cow position:
               
chr5:55966889-55966648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 127
               

               
Conread position:
               
238-467
               

               
Cow position:
               
chr5:72045682-72045456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 150
               

               
Conread position:
               
239-471
               

               
Cow position:
               
chr5:7012854-7012624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
239-472
               

               
Cow position:
               
chr5:65941257-65941024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 129
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr5:46512773-46512542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
242-441
               

               
Cow position:
               
chr5:64027023-64026822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
242-464
               

               
Cow position:
               
chr5:30845110-30845324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
64, 128
               

               
Conread position:
               
242-466
               

               
Cow position:
               
chr5:67932470-67932246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
242-469
               

               
Cow position:
               
chr5:50101380-50101155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr5:25035258-25035028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr5:35208260-35208489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr5:7044709-7044479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr5:42064202-42064434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr5:57074335-57074110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
243-466
               

               
Cow position:
               
chr5:63234827-63234602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
243-467
               

               
Cow position:
               
chr5:33273693-33273918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
65, 157
               

               
Conread position:
               
243-470
               

               
Cow position:
               
chr5:39447538-39447301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 157
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr5:11668187-11667958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 141
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr5:12557290-12557061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 142
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr5:35969532-35969766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
248-409
               

               
Cow position:
               
chr5:30949912-30949746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
290-466
               

               
Cow position:
               
chr5:38079419-38079594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
153, 64
               

               
Conread position:
               
298-472
               

               
Cow position:
               
chr5:15770399-15770226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 107
               

               
Conread position:
               
299-471
               

               
Cow position:
               
chr5:36038944-36038780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
300-464
               

               
Cow position:
               
chr5:64843912-64843747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
143, 85
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr5:39815442-39815274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr5:53175199-53175022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
305-472
               

               
Cow position:
               
chr5:32975822-32975989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 138
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr6:35873314-35873115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr6:39136916-39137117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr6:39359061-39358838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
209-472
               

               
Cow position:
               
chr6:18447540-18447276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 175
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr6:15447193-15446954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr6:50504462-50504695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
237-474
               

               
Cow position:
               
chr6:53841500-53841262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
238-400
               

               
Cow position:
               
chr6:38771291-38771452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
241-466
               

               
Cow position:
               
chr6:19446263-19446486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 140
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr6:19264490-19264266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr6:38207479-38207250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
241-470
               

               
Cow position:
               
chr6:67950964-67951194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr6:51530181-51529951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 143
               

               
Conread position:
               
242-466
               

               
Cow position:
               
chr6:17794753-17794522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr6:57546211-57545990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr6:6400964-6401205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
243-471
               

               
Cow position:
               
chr6:10105968-10105745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr6:8600012-8600244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 198
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr6:21475740-21475964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr6:14914221-14913995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 146
               

               
Conread position:
               
287-472
               

               
Cow position:
               
chr6:36570519-36570705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
115, 93
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr6:36938940-36939109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
141, 80
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chr6:21004748-21004920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
6, 77
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr7:14081689-14081549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr7:53381500-53381669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr7:57209334-57209139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr7:19913013-19912818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr7:23554472-23554661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr7:7477254-7477062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr7:61652684-61652886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr7:49750408-49750633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
115, 207
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr7:24767962-24767737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr7:40404776-40405000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr7:54478797-54478572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
211-383
               

               
Cow position:
               
chr7:27283656-27283832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
229-473
               

               
Cow position:
               
chr7:11796904-11796661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 147
               

               
Conread position:
               
230-377
               

               
Cow position:
               
chr7:65122336-65122484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 70
               

               
Conread position:
               
234-470
               

               
Cow position:
               
chr7:32946073-32946305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr7:26263645-26263412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 164
               

               
Conread position:
               
238-470
               

               
Cow position:
               
chr7:64135457-64135228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
239-400
               

               
Cow position:
               
chr7:5199538-5199374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
241-390
               

               
Cow position:
               
chr7:23090132-23089981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr7:6116354-6116130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr7:11015693-11015936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr7:51019791-51020021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
242-378
               

               
Cow position:
               
chr7:23568722-23568583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
242-464
               

               
Cow position:
               
chr7:39129593-39129368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr7:4720217-4719986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr7:23636720-23636950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
242-475
               

               
Cow position:
               
chr7:33720048-33720279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
242-478
               

               
Cow position:
               
chr7:9861750-9861507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
131, 209
               

               
Conread position:
               
243-468
               

               
Cow position:
               
chr7:29505128-29505349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr7:39838864-39838622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr7:11487659-11487434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
244-389
               

               
Cow position:
               
chr7:30931958-30931812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
244-463
               

               
Cow position:
               
chr7:15755431-15755212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
34, 144
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr7:25393319-25393540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
245-378
               

               
Cow position:
               
chr7:11176714-11176576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chr7:31694622-31694390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
36, 42
               

               
Conread position:
               
252-473
               

               
Cow position:
               
chr7:51685037-51685257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 108
               

               
Conread position:
               
273-471
               

               
Cow position:
               
chr7:25263416-25263610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr7:25860132-25859965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
12, 101
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr7:53806748-53806568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr7:59149583-59149754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
318-473
               

               
Cow position:
               
chr7:40656390-40656229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr8:35291534-35291338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr8:34821658-34821442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr8:27287737-27287513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 111
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr8:38249249-38249025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
210, 137
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr8:47751450-47751207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
215-471
               

               
Cow position:
               
chr8:16061026-16061282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
215-473
               

               
Cow position:
               
chr8:11927091-11927349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
170, 15
               

               
Conread position:
               
230-470
               

               
Cow position:
               
chr8:42794356-42794105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 158
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr8:33125465-33125701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
230-473
               

               
Cow position:
               
chr8:37672005-37672258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr8:5468115-5467873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr8:38893989-38894229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
64, 212
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr8:46235674-46235917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
241-389
               

               
Cow position:
               
chr8:18647376-18647230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
241-464
               

               
Cow position:
               
chr8:21911616-21911845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr8:21858732-21858504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
241-469
               

               
Cow position:
               
chr8:16144110-16144340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 152
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr8:29958386-29958608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr8:35504250-35504011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
242-470
               

               
Cow position:
               
chr8:43439593-43439814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr8:6224453-6224232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
10, 117
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr8:23179560-23179321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
10, 210
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr8:24328871-24328637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 54
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr8:46743331-46743105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr8:20783280-20783052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr8:41722203-41721981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
244-389
               

               
Cow position:
               
chr8:50335537-50335391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr8:41905635-41905410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chr8:41914543-41914318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
247-473
               

               
Cow position:
               
chr8:42112838-42112605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 127
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr8:19784853-19785068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 130
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr8:21069983-21069754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr8:25388131-25388364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr8:45232545-45232778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
134, 21
               

               
Conread position:
               
258-472
               

               
Cow position:
               
chr8:49305751-49305538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 125
               

               
Conread position:
               
297-473
               

               
Cow position:
               
chr8:3887373-3887542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
300-471
               

               
Cow position:
               
chr8:36034925-36034756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 92
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr8:19010793-19010613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr8:29173253-29173417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr8:53641458-53641632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
5, 65
               

               
Conread position:
               
313-468
               

               
Cow position:
               
chr8:10639792-10639947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr9:56861834-56861638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr9:2618438-2618234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr9:23540648-23540854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:25959326-25959115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr9:22755582-22755366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr9:7844341-7844132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
207-470
               

               
Cow position:
               
chr9:2037523-2037268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
209-472
               

               
Cow position:
               
chr9:33598080-33597803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
211-458
               

               
Cow position:
               
chr9:38846246-38846497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr9:54677325-54677087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
218, 18
               

               
Conread position:
               
231-472
               

               
Cow position:
               
chr9:50310695-50310933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
235-473
               

               
Cow position:
               
chr9:39011405-39011638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 5
               

               
Conread position:
               
236-473
               

               
Cow position:
               
chr9:26279105-26279344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 163
               

               
Conread position:
               
237-466
               

               
Cow position:
               
chr9:33218890-33219121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chr9:9443541-9443772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 195
               

               
Conread position:
               
241-393
               

               
Cow position:
               
chr9:1350103-1349950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr9:12786414-12786646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 143
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr9:26477276-26477042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr9:25583888-25583660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 148
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr9:41283073-41282846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr9:12337960-12337730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 142
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr9:47214486-47214721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
242-475
               

               
Cow position:
               
chr9:5104344-5104583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
243-402
               

               
Cow position:
               
chr9:38289268-38289429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
243-441
               

               
Cow position:
               
chr9:20416452-20416651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chr9:8834076-8834301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
160, 49
               

               
Conread position:
               
247-400
               

               
Cow position:
               
chr9:42586503-42586660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
247-473
               

               
Cow position:
               
chr9:27345531-27345760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
251-390
               

               
Cow position:
               
chr9:10308952-10309091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
133, 67
               

               
Conread position:
               
251-472
               

               
Cow position:
               
chr9:13670683-13670466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
264-472
               

               
Cow position:
               
chr9:21460118-21460323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
276-472
               

               
Cow position:
               
chr9:8468076-8467889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 17
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chr9:38624627-38624790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
300-471
               

               
Cow position:
               
chr9:34286795-34286629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
141, 80
               

               
Conread position:
               
304-472
               

               
Cow position:
               
chr9:23840402-23840575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
306-472
               

               
Cow position:
               
chr9:53323794-53323957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
142, 74
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chrX:16325273-16325134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chrX:16517877-16517684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:38228058-38227863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
43, 164
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:44193185-44192983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chrX:40693474-40693251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
211-390
               

               
Cow position:
               
chrX:32978119-32977935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
211-466
               

               
Cow position:
               
chrX:15147229-15146977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
211-473
               

               
Cow position:
               
chrX:20957206-20957466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chrX:31294585-31294374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 18
               

               
Conread position:
               
238-383
               

               
Cow position:
               
chrX:23562625-23562775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
238-461
               

               
Cow position:
               
chrX:32821022-32821257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chrX:3806676-3806907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 146
               

               
Conread position:
               
239-469
               

               
Cow position:
               
chrX:35268860-35269081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
241-463
               

               
Cow position:
               
chrX:20151856-20152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chrX:9252165-9251935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chrX:18964827-18964606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chrX:20339894-20339667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
242-400
               

               
Cow position:
               
chrX:31442832-31442669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-467
               

               
Cow position:
               
chrX:29601831-29601606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chrX:27075054-27074827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chrX:41027157-41027388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chrX:42247184-42246953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
243-441
               

               
Cow position:
               
chrX:23514017-23513812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
243-472
               

               
Cow position:
               
chrX:42855457-42855691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 44
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chrX:35985819-35986044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chrX:22387246-22387015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
138, 203
               

               
Conread position:
               
245-468
               

               
Cow position:
               
chrX:26881565-26881338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
7, 154
               

               
Conread position:
               
245-472
               

               
Cow position:
               
chrX:40035441-40035214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 153
               

               
Conread position:
               
246-378
               

               
Cow position:
               
chrX:11073190-11073053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chrX:36356113-36356332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 43
               

               
Conread position:
               
251-468
               

               
Cow position:
               
chrX:1122536-1122323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
192, 129
               

               
Conread position:
               
252-472
               

               
Cow position:
               
chrX:4559747-4559962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
133, 40
               

               
Conread position:
               
256-472
               

               
Cow position:
               
chrX:38094504-38094298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
300-468
               

               
Cow position:
               
chrX:23485581-23485754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
300-473
               

               
Cow position:
               
chrX:42875271-42875438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
300-474
               

               
Cow position:
               
chrX:42381052-42380882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
301-472
               

               
Cow position:
               
chrX:20583727-20583888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
304-468
               

               
Cow position:
               
chrX:8326968-8327129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
137, 76
               

               
Conread position:
               
304-473
               

               
Cow position:
               
chrX:41991070-41990894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
306-472
               

               
Cow position:
               
chrX:40648961-40649130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0