Cow genome map
| Conread name: | rgul0102_n10.y1 |
| Conread position: | 243-452 |
| Cow position: | chr10:21075860-21076072 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 248-442 |
| Cow position: | chr10:39881782-39881584 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 265-460 |
| Cow position: | chr10:53363506-53363700 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 85, 106 |
| Conread position: | 270-459 |
| Cow position: | chr10:20396302-20396493 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 243-435 |
| Cow position: | chr11:30186227-30186422 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 107, 180 |
| Conread position: | 243-460 |
| Cow position: | chr11:38006195-38005975 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 245-442 |
| Cow position: | chr11:10218429-10218228 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 105, 179 |
| Conread position: | 245-442 |
| Cow position: | chr13:22186525-22186324 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 245-460 |
| Cow position: | chr13:21130484-21130702 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 106, 178 |
| Conread position: | 260-444 |
| Cow position: | chr13:34047854-34048041 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 222-429 |
| Cow position: | chr14:30707635-30707426 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 128, 139 |
| Conread position: | 231-407 |
| Cow position: | chr14:48406611-48406432 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 245-448 |
| Cow position: | chr14:39723096-39722889 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 105, 178 |
| Conread position: | 245-444 |
| Cow position: | chr15:32286355-32286549 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 101, 131 |
| Conread position: | 243-441 |
| Cow position: | chr16:25293088-25293281 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 182, 16 |
| Conread position: | 243-442 |
| Cow position: | chr16:28439051-28438849 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 256-425 |
| Cow position: | chr16:10770153-10770325 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 243-448 |
| Cow position: | chr18:9187257-9187049 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 109, 141 |
| Conread position: | 245-459 |
| Cow position: | chr18:46878461-46878245 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 231-447 |
| Cow position: | chr19:17017986-17018201 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 243-398 |
| Cow position: | chr19:32183970-32183814 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 111, 55 |
| Conread position: | 243-447 |
| Cow position: | chr19:7450482-7450278 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 111, 75 |
| Conread position: | 243-460 |
| Cow position: | chr19:7405905-7405702 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 250-460 |
| Cow position: | chr19:42300003-42299792 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 284-457 |
| Cow position: | chr19:32183898-32183719 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 230-460 |
| Cow position: | chr2:11724780-11725014 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 192 |
| Conread position: | 243-428 |
| Cow position: | chr2:4275016-4274829 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 107, 166 |
| Conread position: | 243-440 |
| Cow position: | chr2:77207631-77207830 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 151 |
| Conread position: | 243-460 |
| Cow position: | chr2:32436377-32436169 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 275-395 |
| Cow position: | chr2:34475936-34475813 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 245-442 |
| Cow position: | chr20:18328814-18328616 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 144 |
| Conread position: | 243-460 |
| Cow position: | chr21:26094405-26094623 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 54, 119 |
| Conread position: | 243-460 |
| Cow position: | chr21:34002705-34002485 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 245-447 |
| Cow position: | chr21:993439-993232 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 106, 180 |
| Conread position: | 249-460 |
| Cow position: | chr21:21927181-21926967 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1-136 |
| Cow position: | chr22:299291-299157 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 243-460 |
| Cow position: | chr22:8873292-8873513 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 107, 168 |
| Conread position: | 245-447 |
| Cow position: | chr22:35943977-35943774 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 105, 28 |
| Conread position: | 250-447 |
| Cow position: | chr22:36581666-36581469 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 17 |
| Conread position: | 295-442 |
| Cow position: | chr22:41237029-41237179 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 243-444 |
| Cow position: | chr23:1322420-1322216 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 243-412 |
| Cow position: | chr24:6047751-6047923 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 243-447 |
| Cow position: | chr24:14873843-14873638 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 107, 166 |
| Conread position: | 244-440 |
| Cow position: | chr25:3379251-3379058 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 243-460 |
| Cow position: | chr26:6489552-6489332 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 107, 87 |
| Conread position: | 15-139 |
| Cow position: | chr27:21288965-21288842 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 232-429 |
| Cow position: | chr28:29437693-29437493 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 243-447 |
| Cow position: | chr28:10591903-10591699 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 109, 136 |
| Conread position: | 245-447 |
| Cow position: | chr29:16017703-16017498 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 105, 175 |
| Conread position: | 231-458 |
| Cow position: | chr3:18729813-18729585 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 243-416 |
| Cow position: | chr3:37624079-37624255 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 243-460 |
| Cow position: | chr3:60387716-60387936 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 106, 126 |
| Conread position: | 273-442 |
| Cow position: | chr3:40104528-40104358 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 292-460 |
| Cow position: | chr3:17936674-17936503 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 230-427 |
| Cow position: | chr5:39871242-39871432 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 119 |
| Conread position: | 243-439 |
| Cow position: | chr5:6179582-6179787 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 271-459 |
| Cow position: | chr5:58056468-58056277 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-140 |
| Cow position: | chr6:39161429-39161565 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 243-448 |
| Cow position: | chr6:59478834-59478626 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 243-459 |
| Cow position: | chr6:39161599-39161811 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 111, 15 |
| Conread position: | 249-442 |
| Cow position: | chr6:35432933-35433133 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 14-138 |
| Cow position: | chr7:53058461-53058338 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 202-443 |
| Cow position: | chr7:42299431-42299184 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 243-447 |
| Cow position: | chr7:30299611-30299820 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 168 |
| Conread position: | 243-447 |
| Cow position: | chr7:67811109-67811314 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 42, 134 |
| Conread position: | 243-460 |
| Cow position: | chr7:65497309-65497094 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 250-440 |
| Cow position: | chr7:30120058-30119868 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 100, 132 |
| Conread position: | 253-460 |
| Cow position: | chr7:68894803-68895009 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 8, 118 |
| Conread position: | 243-440 |
| Cow position: | chr8:38579637-38579438 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 166 |
| Conread position: | 245-447 |
| Cow position: | chr8:39159976-39160182 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 105, 176 |
| Conread position: | 252-460 |
| Cow position: | chr8:9136231-9136027 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 1-139 |
| Cow position: | chr9:64158230-64158365 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 226-460 |
| Cow position: | chr9:29327337-29327567 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 236-460 |
| Cow position: | chr9:3725568-3725790 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 243-442 |
| Cow position: | chr9:54994611-54994814 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 243-460 |
| Cow position: | chr9:64158400-64158638 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 21-143 |
| Cow position: | chrX:26428948-26428827 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 243-405 |
| Cow position: | chrX:28876335-28876170 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 243-430 |
| Cow position: | chrX:24115284-24115096 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 243-441 |
| Cow position: | chrX:41890151-41889953 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 107, 55 |
| Conread position: | 243-447 |
| Cow position: | chrX:29798921-29798718 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 107, 56 |
| Conread position: | 245-444 |
| Cow position: | chrX:26428798-26428597 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 20 |