• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rgul0120_e11.y1
        

               
Conread position:
               
1-279
               

               
Cow position:
               
chr10:58057528-58057794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr10:61695530-61695841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr10:52714848-52715187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 176
               

               
Conread position:
               
2-328
               

               
Cow position:
               
chr10:61609655-61609993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr10:61646895-61646652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr10:66053639-66053883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr10:980143-980419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
149, 111
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr10:23146408-23146143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
187, 65
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr10:11076083-11076319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
186, 82
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr10:5289079-5288820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr10:11047556-11047284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
9-269
               

               
Cow position:
               
chr10:64834460-64834731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 173
               

               
Conread position:
               
28-275
               

               
Cow position:
               
chr10:67565654-67565906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
40-328
               

               
Cow position:
               
chr10:55869701-55869982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 63
               

               
Conread position:
               
45-328
               

               
Cow position:
               
chr10:42981495-42981771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
60, 67
               

               
Conread position:
               
46-249
               

               
Cow position:
               
chr10:33993321-33993525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
57-269
               

               
Cow position:
               
chr10:46173775-46173986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
131-328
               

               
Cow position:
               
chr10:8311781-8311981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
137-328
               

               
Cow position:
               
chr10:50747096-50746906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
182-329
               

               
Cow position:
               
chr10:7815813-7815963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr11:63986413-63986591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
102, 116
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr11:86591066-86591301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
189, 61
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr11:81547331-81547599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
131, 157
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr11:2079245-2078971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
104, 36
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr11:20722085-20721755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 96
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr11:72953850-72953555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
69, 95
               

               
Conread position:
               
2-328
               

               
Cow position:
               
chr11:1296793-1296466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 112
               

               
Conread position:
               
3-115
               

               
Cow position:
               
chr11:63648125-63648013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr11:36164604-36164868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr11:39076113-39075859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr11:63990124-63990313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
77, 84
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr11:63659156-63658904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
99, 107
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr11:33288854-33289104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr11:53783248-53782979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 80
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr11:1608527-1608261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
5-320
               

               
Cow position:
               
chr11:25541083-25540776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr11:82114751-82115070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
9-265
               

               
Cow position:
               
chr11:42120131-42120376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
72, 76
               

               
Conread position:
               
22-321
               

               
Cow position:
               
chr11:68450579-68450285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
47-213
               

               
Cow position:
               
chr11:35647628-35647461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
47-312
               

               
Cow position:
               
chr11:10105510-10105796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 217
               

               
Conread position:
               
83-265
               

               
Cow position:
               
chr11:25651556-25651381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
150-328
               

               
Cow position:
               
chr11:47746340-47746522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr11:63986814-63986968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr12:4569205-4569031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr12:17647278-17647012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 72
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr12:414093-413768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
277, 29
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr12:7952729-7952998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
79, 182
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr12:26503419-26503182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
9-321
               

               
Cow position:
               
chr12:24553142-24552826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 82
               

               
Conread position:
               
14-334
               

               
Cow position:
               
chr12:13979980-13980293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 67
               

               
Conread position:
               
35-269
               

               
Cow position:
               
chr12:21955294-21955051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
128-303
               

               
Cow position:
               
chr12:42730563-42730398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
149, 77
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr13:43733433-43733165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
76, 55
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr13:24603489-24603807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 138
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr13:5466-5776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
200, 98
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr13:20911457-20911775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 89
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:52050051-52050363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
73, 123
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr13:23439509-23439829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
2-331
               

               
Cow position:
               
chr13:20352332-20352010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
243, 38
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr13:11228599-11228920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 70
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr13:40113365-40113612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
100, 105
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr13:60174038-60174286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
80, 162
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr13:17168375-17168116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr13:21432880-21433145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 39
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr13:32313888-32314150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr13:19449400-19449132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
101, 76
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr13:34055491-34055801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
274, 32
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr13:17761960-17762286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 132
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr13:20774598-20774274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr13:3936906-3936578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 78
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr13:47166236-47166549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
6-328
               

               
Cow position:
               
chr13:42715893-42715589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
115, 29
               

               
Conread position:
               
16-279
               

               
Cow position:
               
chr13:18323206-18323464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
33-255
               

               
Cow position:
               
chr13:19469187-19468970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
40-265
               

               
Cow position:
               
chr13:52753190-52752973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
41-274
               

               
Cow position:
               
chr13:36906288-36906053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 147
               

               
Conread position:
               
42-279
               

               
Cow position:
               
chr13:18645155-18645390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
50-269
               

               
Cow position:
               
chr13:20360696-20360908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 133
               

               
Conread position:
               
86-269
               

               
Cow position:
               
chr13:55562639-55562815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
127-320
               

               
Cow position:
               
chr13:13192576-13192769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
149, 92
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr13:56694343-56694531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
145-328
               

               
Cow position:
               
chr13:51849364-51849545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
134, 157
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr14:4877744-4878065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 125
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr14:2194644-2194996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
102, 205
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr14:7952567-7952881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
276, 32
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr14:28989768-28990026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
194, 60
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr14:25153977-25154152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
117, 75
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr14:34347090-34346846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
188, 12
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr14:20583813-20583544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 135
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr14:43781426-43781123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
82, 99
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr14:48695753-48695422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
6-269
               

               
Cow position:
               
chr14:13050492-13050741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
7-263
               

               
Cow position:
               
chr14:3034086-3034336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
15-323
               

               
Cow position:
               
chr14:5417424-5417733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 0
               

               
Conread position:
               
47-320
               

               
Cow position:
               
chr14:3646858-3646588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 153
               

               
Conread position:
               
49-331
               

               
Cow position:
               
chr14:44210200-44209923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
84-263
               

               
Cow position:
               
chr14:2032316-2032495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 6
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr15:27251106-27250825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 86
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr15:660705-660400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr15:15231062-15230857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
190, 71
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr15:229349-229086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr15:5236862-5237123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr15:35611351-35611619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr15:39381737-39381992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr15:22127619-22127347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
80, 143
               

               
Conread position:
               
5-272
               

               
Cow position:
               
chr15:5406424-5406159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr15:29511946-29511678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
200, 17
               

               
Conread position:
               
8-275
               

               
Cow position:
               
chr15:31949696-31949957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr15:10855249-10855490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
33-269
               

               
Cow position:
               
chr15:30553355-30553108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
45-309
               

               
Cow position:
               
chr15:10562880-10562621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 44
               

               
Conread position:
               
84-273
               

               
Cow position:
               
chr15:38505521-38505714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 171
               

               
Conread position:
               
140-279
               

               
Cow position:
               
chr15:39819854-39819991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr16:52039972-52039732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
60, 119
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr16:37373455-37373703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
174, 79
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr16:46164959-46165209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr16:35204028-35204296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
105, 81
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr16:33715469-33715159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
276, 119
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr16:45239375-45239059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
125, 114
               

               
Conread position:
               
3-145
               

               
Cow position:
               
chr16:2577345-2577201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr16:52640075-52640242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
4-331
               

               
Cow position:
               
chr16:53591019-53591344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 83
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chr16:17883373-17883574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
5-257
               

               
Cow position:
               
chr16:10672201-10672469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr16:45444629-45444878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
5-272
               

               
Cow position:
               
chr16:52106921-52106654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
74, 227
               

               
Conread position:
               
5-272
               

               
Cow position:
               
chr16:52110192-52109925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
74, 227
               

               
Conread position:
               
6-265
               

               
Cow position:
               
chr16:54483264-54483006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
110, 150
               

               
Conread position:
               
8-269
               

               
Cow position:
               
chr16:53441801-53442042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
11-258
               

               
Cow position:
               
chr16:56901649-56901917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
70, 205
               

               
Conread position:
               
13-269
               

               
Cow position:
               
chr16:11190334-11190585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
213, 19
               

               
Conread position:
               
25-269
               

               
Cow position:
               
chr16:33279832-33279577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
108, 58
               

               
Conread position:
               
45-303
               

               
Cow position:
               
chr16:10075812-10076056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
231, 98
               

               
Conread position:
               
47-278
               

               
Cow position:
               
chr16:42612162-42611925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
148, 61
               

               
Conread position:
               
47-280
               

               
Cow position:
               
chr16:21366138-21365914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
83-269
               

               
Cow position:
               
chr16:15224294-15224470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr16:31532418-31532607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
137, 186
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr17:5904426-5904181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
242, 29
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr17:26774766-26775020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr17:27176583-27176310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 79
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr17:27762257-27762518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr17:906087-905815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
82, 109
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr17:8244087-8244359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
167, 80
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr17:27722369-27722055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 83
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr17:25103200-25102873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 99
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr17:35314367-35314708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 142
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr17:4526598-4526756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr17:1368787-1368554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
83, 132
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr17:23512527-23512798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr17:9316624-9316889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr17:3496202-3495929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 120
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr17:30472308-30472588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr17:21332172-21332397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr17:2028514-2028743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 66
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr17:40227690-40227951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
20-270
               

               
Cow position:
               
chr17:38154881-38154626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
117, 241
               

               
Conread position:
               
39-327
               

               
Cow position:
               
chr17:20827860-20828160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
85, 298
               

               
Conread position:
               
43-249
               

               
Cow position:
               
chr17:13455995-13455786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
82, 66
               

               
Conread position:
               
77-319
               

               
Cow position:
               
chr17:36072601-36072342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
128-328
               

               
Cow position:
               
chr17:20743636-20743838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
151, 95
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr17:25464016-25463830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
137, 125
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:35863600-35863393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
103, 109
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr18:39277456-39277696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:35867593-35867859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
128, 202
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr18:42533883-42533610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
104, 137
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr18:46025596-46025334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 92
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr18:16370898-16370624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
132, 181
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr18:42730527-42730842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 65
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr18:22615694-22616029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr18:34430701-34430975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
103, 42
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr18:35039509-35039234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr18:22186057-22185792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
196, 13
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr18:56205359-56205620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
183, 114
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr18:24050095-24049893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr18:43623038-43622818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
155, 27
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chr18:45116199-45115960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr18:2787771-2788017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
246, 56
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr18:703915-704178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr18:12290402-12290127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
78, 111
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr18:29654700-29654429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr18:48859599-48859330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 126
               

               
Conread position:
               
9-272
               

               
Cow position:
               
chr18:51737195-51736937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr18:35512868-35513088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 102
               

               
Conread position:
               
13-269
               

               
Cow position:
               
chr18:50044446-50044682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
14-331
               

               
Cow position:
               
chr18:40409384-40409707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 199
               

               
Conread position:
               
16-279
               

               
Cow position:
               
chr18:35513645-35513387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
16-331
               

               
Cow position:
               
chr18:16085673-16085983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
24-269
               

               
Cow position:
               
chr18:56263877-56263638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
45-291
               

               
Cow position:
               
chr18:23050424-23050180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
132-273
               

               
Cow position:
               
chr18:37166084-37165944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
170-335
               

               
Cow position:
               
chr18:35364704-35364538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 27
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr19:51215920-51215692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr19:52390993-52391236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr19:40500261-40499995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
104, 115
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr19:33349175-33348907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr19:53818831-53818562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr19:32888170-32888488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr19:38588147-38588321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
2-331
               

               
Cow position:
               
chr19:53257154-53257479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
249, 61
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chr19:21381769-21381591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 110
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr19:56169883-56169652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr19:44111215-44111480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
14-268
               

               
Cow position:
               
chr19:8928926-8928675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
146, 113
               

               
Conread position:
               
40-251
               

               
Cow position:
               
chr19:49105077-49105294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
88, 5
               

               
Conread position:
               
83-269
               

               
Cow position:
               
chr19:14733074-14733267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
128-320
               

               
Cow position:
               
chr19:35600968-35600783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr2:39552067-39551881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
182, 173
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr2:36478957-36479168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
124, 61
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr2:83592758-83592453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
129, 70
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr2:46011269-46011603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr2:78077458-78077790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
129, 60
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr2:32424714-32424988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
189, 60
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr2:46336527-46336195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 187
               

               
Conread position:
               
4-213
               

               
Cow position:
               
chr2:50881408-50881618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
127, 86
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr2:7880350-7880176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr2:39339393-39339209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr2:82122969-82123189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr2:74696840-74697063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
68, 47
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr2:51204207-51203944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 190
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr2:32643757-32643499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr2:12921872-12922127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr2:15560358-15560100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 110
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr2:41273887-41273626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr2:15271667-15271931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr2:84150690-84150956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 103
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr2:42212779-42213055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
5-320
               

               
Cow position:
               
chr2:54452701-54452398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
219, 75
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr2:66127569-66127247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 45
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr2:1154438-1154146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
216, 35
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr2:63795399-63795713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 91
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr2:1631046-1630777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr2:56035600-56035332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 77
               

               
Conread position:
               
11-279
               

               
Cow position:
               
chr2:75547662-75547396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
22-258
               

               
Cow position:
               
chr2:45907764-45907991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
169, 105
               

               
Conread position:
               
45-331
               

               
Cow position:
               
chr2:41041199-41041485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
64-285
               

               
Cow position:
               
chr2:39533448-39533231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
79-335
               

               
Cow position:
               
chr2:45779498-45779240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
149, 49
               

               
Conread position:
               
129-328
               

               
Cow position:
               
chr2:86200221-86200413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
147, 41
               

               
Conread position:
               
135-269
               

               
Cow position:
               
chr2:28674279-28674148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
142-270
               

               
Cow position:
               
chr2:78076216-78076343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
143-327
               

               
Cow position:
               
chr2:12915111-12915291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
149, 48
               

               
Conread position:
               
197-335
               

               
Cow position:
               
chr2:39551897-39551758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr20:3865752-3865549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr20:35869175-35868931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr20:35169492-35169222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 169
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr20:14393546-14393800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
120, 92
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr20:39270588-39270847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
10-269
               

               
Cow position:
               
chr20:23291873-23292129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
42-303
               

               
Cow position:
               
chr20:24091356-24091627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
81-240
               

               
Cow position:
               
chr20:1411087-1411245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chr20:14528276-14528446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 163
               

               
Conread position:
               
100-297
               

               
Cow position:
               
chr20:24023928-24023732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
12, 8
               

               
Conread position:
               
124-328
               

               
Cow position:
               
chr20:23819654-23819857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
142, 12
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr21:18153375-18153552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr21:17923978-17924195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:10277416-10277187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr21:17907464-17907747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 7
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr21:7780575-7780902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 135
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr21:3495209-3494878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 87
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr21:35146812-35146485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr21:11362167-11361911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chr21:24986507-24986787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 122
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr21:5644684-5644413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
29, 169
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr21:19059039-19058766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr21:20029505-20029781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 173
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr21:25522195-25521933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr21:16513396-16513667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
180, 82
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr21:41100078-41099775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr21:7619436-7619095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
125, 218
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr21:5541997-5542318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 109
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr21:41591219-41591537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 99
               

               
Conread position:
               
5-335
               

               
Cow position:
               
chr21:5026781-5026475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
266, 78
               

               
Conread position:
               
8-259
               

               
Cow position:
               
chr21:14776117-14776366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
8-269
               

               
Cow position:
               
chr21:36812187-36812443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
119, 132
               

               
Conread position:
               
12-279
               

               
Cow position:
               
chr21:4755337-4755084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
15-264
               

               
Cow position:
               
chr21:249146-248891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 72
               

               
Conread position:
               
22-279
               

               
Cow position:
               
chr21:17991476-17991229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
24-328
               

               
Cow position:
               
chr21:35094466-35094772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 16
               

               
Conread position:
               
28-231
               

               
Cow position:
               
chr21:41102937-41103136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
106, 74
               

               
Conread position:
               
40-285
               

               
Cow position:
               
chr21:42593263-42593028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
123, 81
               

               
Conread position:
               
46-335
               

               
Cow position:
               
chr21:10131061-10131338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
140-269
               

               
Cow position:
               
chr21:27565622-27565493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr22:6095886-6095617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 106
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr22:35921285-35921555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr22:16302363-16302036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr22:13663642-13663965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 56
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr22:8148501-8148825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr22:6542640-6542975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 128
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr22:19394107-19394416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr22:2863167-2863386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
174, 85
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr22:6143584-6143814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
134, 90
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr22:3461004-3461268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr22:38174074-38174340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr22:10622212-10621952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr22:43708253-43708567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
309, 119
               

               
Conread position:
               
6-112
               

               
Cow position:
               
chr22:44570751-44570645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
14-330
               

               
Cow position:
               
chr22:5598208-5598525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
140, 110
               

               
Conread position:
               
47-269
               

               
Cow position:
               
chr22:15934474-15934696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-323
               

               
Cow position:
               
chr22:20367463-20367280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr23:4826093-4826298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr23:1309814-1309580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 72
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr23:2344806-2345073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 102
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr23:522336-522020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
154, 62
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr23:3838310-3838004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
130, 92
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr23:38975690-38975452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
4-329
               

               
Cow position:
               
chr23:35500518-35500847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 128
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chr23:8580828-8581044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr23:5141845-5142101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 67
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr23:37439942-37440214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
90, 137
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr23:12802455-12802726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr23:1652486-1652148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
70, 196
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr23:29461520-29461846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 131
               

               
Conread position:
               
7-174
               

               
Cow position:
               
chr23:38261047-38261211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr23:263396-263647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
92, 100
               

               
Conread position:
               
40-328
               

               
Cow position:
               
chr23:19628896-19628613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 50
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr24:44032648-44032886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
133, 11
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr24:40588516-40588197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 114
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr24:36430681-36431010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 226
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr24:2656307-2656052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr24:6767738-6767484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr24:33337258-33337580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr24:174017-174330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
40-269
               

               
Cow position:
               
chr24:2205230-2205452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
45-241
               

               
Cow position:
               
chr24:2096413-2096222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
49-320
               

               
Cow position:
               
chr24:38682426-38682696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 34
               

               
Conread position:
               
84-279
               

               
Cow position:
               
chr24:42806998-42807190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
115-269
               

               
Cow position:
               
chr24:32415389-32415238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr25:8598293-8598068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chr25:16314752-16314531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
188, 116
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr25:25813337-25813042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
100, 135
               

               
Conread position:
               
6-254
               

               
Cow position:
               
chr25:36164285-36164040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 74
               

               
Conread position:
               
8-240
               

               
Cow position:
               
chr25:27224427-27224197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
14-269
               

               
Cow position:
               
chr25:26138279-26138038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 57
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chr25:21507506-21507810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
40-331
               

               
Cow position:
               
chr25:26227702-26227423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
45-320
               

               
Cow position:
               
chr25:26186944-26186669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
47-335
               

               
Cow position:
               
chr25:26853311-26853601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 89
               

               
Conread position:
               
128-303
               

               
Cow position:
               
chr25:5788590-5788766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
153, 121
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr26:6832520-6832257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr26:20549553-20549319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr26:3892924-3892655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
76, 83
               

               
Conread position:
               
14-268
               

               
Cow position:
               
chr26:32823299-32823540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
124, 49
               

               
Conread position:
               
14-335
               

               
Cow position:
               
chr26:31926317-31926006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
263, 73
               

               
Conread position:
               
40-279
               

               
Cow position:
               
chr26:33348402-33348634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
43-269
               

               
Cow position:
               
chr26:19839010-19839224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
45-232
               

               
Cow position:
               
chr26:27923651-27923459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
93-251
               

               
Cow position:
               
chr26:12835135-12834980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr27:28247332-28247574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr27:13664424-13664155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
124, 9
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr27:13795901-13795634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr27:26818332-26818075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr27:24955816-24956137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 78
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr27:30439264-30439590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 161
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr27:16610634-16610942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
242, 71
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr27:24915223-24914951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
243, 76
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr27:22258018-22258284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
11-328
               

               
Cow position:
               
chr27:30472368-30472049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 125
               

               
Conread position:
               
12-321
               

               
Cow position:
               
chr27:24398709-24398402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
69, 112
               

               
Conread position:
               
19-275
               

               
Cow position:
               
chr27:28224655-28224903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
45-307
               

               
Cow position:
               
chr27:15877238-15877500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
72-269
               

               
Cow position:
               
chr27:11495131-11494930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
132-334
               

               
Cow position:
               
chr27:17450778-17450574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 201
               

               
Conread position:
               
170-328
               

               
Cow position:
               
chr27:22145394-22145240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
109, 23
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr28:5309025-5309297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
87, 163
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr28:3409714-3409395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 141
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr28:5100243-5100560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 70
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr28:13700595-13700331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr28:7586865-7587127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr28:24409312-24409057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
180, 79
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr28:4212580-4212310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
193, 116
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr28:30981990-30981724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
76, 83
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr28:58335-58008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr28:3713807-3713493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 129
               

               
Conread position:
               
8-183
               

               
Cow position:
               
chr28:9898330-9898149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
14-279
               

               
Cow position:
               
chr28:22015268-22015522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
28-320
               

               
Cow position:
               
chr28:3172380-3172092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
33-269
               

               
Cow position:
               
chr28:1516659-1516884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
45-272
               

               
Cow position:
               
chr28:5895671-5895892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
45-309
               

               
Cow position:
               
chr28:16355096-16355360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 38
               

               
Conread position:
               
45-325
               

               
Cow position:
               
chr28:16253189-16253466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
226, 58
               

               
Conread position:
               
50-320
               

               
Cow position:
               
chr28:22338009-22337747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
115-279
               

               
Cow position:
               
chr28:3681059-3680893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr29:38943725-38943995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 101
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr29:41063285-41063612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 118
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr29:25069891-25069552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr29:493200-492939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr29:42479281-42479027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
5-272
               

               
Cow position:
               
chr29:40671725-40671461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr29:27102476-27102742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr29:24185368-24185070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
237, 110
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr29:41565645-41565971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 101
               

               
Conread position:
               
6-271
               

               
Cow position:
               
chr29:42933700-42933447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
7-185
               

               
Cow position:
               
chr29:43953472-43953653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
73, 65
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chr29:36829215-36828999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
188, 91
               

               
Conread position:
               
18-331
               

               
Cow position:
               
chr29:28722652-28722333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
51-269
               

               
Cow position:
               
chr29:42843222-42843019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
73-328
               

               
Cow position:
               
chr29:26220270-26220526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
110-331
               

               
Cow position:
               
chr29:8290698-8290921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
133, 26
               

               
Conread position:
               
140-279
               

               
Cow position:
               
chr29:24357827-24357688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
105, 23
               

               
Conread position:
               
171-327
               

               
Cow position:
               
chr29:30435975-30436131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 152
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr3:48220438-48220649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
190, 7
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr3:13294514-13294298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 110
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr3:20205319-20205071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 109
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr3:47728722-47728397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 86
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr3:15276400-15276714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
276, 77
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr3:70921606-70921286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chr3:45276651-45276490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr3:54426560-54426238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr3:75983388-75983706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
310, 86
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr3:8597482-8597696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr3:40790716-40790492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr3:59566107-59565874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr3:1991534-1991792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
27-246
               

               
Cow position:
               
chr3:74665592-74665809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
76, 113
               

               
Conread position:
               
45-242
               

               
Cow position:
               
chr3:69296028-69295834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
146, 38
               

               
Conread position:
               
47-300
               

               
Cow position:
               
chr3:71283372-71283621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
83-321
               

               
Cow position:
               
chr3:43869866-43870102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
231, 55
               

               
Conread position:
               
129-320
               

               
Cow position:
               
chr3:45504030-45504216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr4:19244784-19244527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr4:10053059-10052764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
102, 30
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr4:7697270-7697093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 114
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr4:12663858-12663659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
58, 138
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr4:37642635-37642893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
128, 182
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr4:65998574-65998854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 107
               

               
Conread position:
               
9-269
               

               
Cow position:
               
chr4:13973702-13973458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
10-265
               

               
Cow position:
               
chr4:21149565-21149821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
182, 46
               

               
Conread position:
               
47-328
               

               
Cow position:
               
chr4:22070-21793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
55-327
               

               
Cow position:
               
chr4:62124888-62125158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
65-326
               

               
Cow position:
               
chr4:14130586-14130331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
137-328
               

               
Cow position:
               
chr4:43063723-43063531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr5:73176759-73176541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr5:20013967-20014203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
216, 7
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr5:63579817-63580121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
42, 108
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr5:34182572-34182255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
104, 113
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr5:49082795-49082471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
79, 74
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr5:65671005-65670749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
153, 123
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr5:44843703-44843428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chr5:64172841-64173143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 124
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr5:4263402-4263093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 172
               

               
Conread position:
               
6-327
               

               
Cow position:
               
chr5:7867863-7868180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
64, 140
               

               
Conread position:
               
7-279
               

               
Cow position:
               
chr5:7413859-7414113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
30-279
               

               
Cow position:
               
chr5:10885210-10884969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 58
               

               
Conread position:
               
40-273
               

               
Cow position:
               
chr5:53959199-53958971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
41-327
               

               
Cow position:
               
chr5:63126093-63125807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
45-269
               

               
Cow position:
               
chr5:20744300-20744520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
47-266
               

               
Cow position:
               
chr5:55349856-55349647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
70-257
               

               
Cow position:
               
chr5:20658813-20658625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
96-258
               

               
Cow position:
               
chr5:57408622-57408789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
163-328
               

               
Cow position:
               
chr5:47538785-47538619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr6:38945481-38945720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
119, 86
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr6:29540877-29540642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr6:52617314-52617059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
98, 105
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr6:3350027-3350286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
236, 198
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr6:60758094-60757828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 101
               

               
Conread position:
               
7-279
               

               
Cow position:
               
chr6:19410913-19410653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
72, 54
               

               
Conread position:
               
8-171
               

               
Cow position:
               
chr6:35232541-35232384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr6:50468913-50469167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 219
               

               
Conread position:
               
8-250
               

               
Cow position:
               
chr6:58963571-58963811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
10-269
               

               
Cow position:
               
chr6:57240223-57239971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
17-273
               

               
Cow position:
               
chr6:62209477-62209729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
27-308
               

               
Cow position:
               
chr6:69435853-69436128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
172, 92
               

               
Conread position:
               
45-264
               

               
Cow position:
               
chr6:1710851-1711057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 77
               

               
Conread position:
               
45-265
               

               
Cow position:
               
chr6:67740298-67740081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
67, 59
               

               
Conread position:
               
47-328
               

               
Cow position:
               
chr6:54628694-54628962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
35, 72
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:50341603-50341858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
96-242
               

               
Cow position:
               
chr6:63169484-63169629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
127-273
               

               
Cow position:
               
chr6:35180812-35180959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
155-322
               

               
Cow position:
               
chr6:61439054-61439221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 139
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr7:30140658-30140911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 125
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr7:23954203-23953915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr7:23676867-23677063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr7:23561252-23561000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
4-331
               

               
Cow position:
               
chr7:5483164-5482834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 270
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chr7:4935107-4934902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
107, 103
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr7:11144773-11144550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 104
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr7:10458020-10458282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 131
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr7:561821-562086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chr7:52201520-52201260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
193, 106
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr7:53490580-53490849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
40-328
               

               
Cow position:
               
chr7:22352169-22351870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 199
               

               
Conread position:
               
45-234
               

               
Cow position:
               
chr7:10484932-10484747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
115-269
               

               
Cow position:
               
chr7:32889140-32888985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
115-328
               

               
Cow position:
               
chr7:23586782-23586576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
161, 55
               

               
Conread position:
               
141-265
               

               
Cow position:
               
chr7:10988394-10988270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
141-329
               

               
Cow position:
               
chr7:33542202-33542012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr8:18001319-18001554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 115
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr8:34798792-34798533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr8:20048983-20049254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 82
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr8:48188739-48189002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr8:39735334-39735594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr8:25510262-25510011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr8:9067881-9068161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr8:47442882-47442588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 75
               

               
Conread position:
               
12-255
               

               
Cow position:
               
chr8:47542746-47542501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
93, 129
               

               
Conread position:
               
12-307
               

               
Cow position:
               
chr8:3902282-3901984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
79, 129
               

               
Conread position:
               
23-273
               

               
Cow position:
               
chr8:4546070-4546312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
172, 85
               

               
Conread position:
               
28-269
               

               
Cow position:
               
chr8:40887081-40887315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
32-328
               

               
Cow position:
               
chr8:58409665-58409376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
133, 88
               

               
Conread position:
               
40-334
               

               
Cow position:
               
chr8:36645527-36645235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
45-192
               

               
Cow position:
               
chr8:55592713-55592856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr8:24343422-24343614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 80
               

               
Conread position:
               
83-273
               

               
Cow position:
               
chr8:761065-761259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 178
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr8:52623489-52623312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
128-279
               

               
Cow position:
               
chr8:11647291-11647141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
141-321
               

               
Cow position:
               
chr8:7097777-7097956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 46
               

               
Conread position:
               
153-328
               

               
Cow position:
               
chr8:27700761-27700588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
158, 43
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr9:22245484-22245706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chr9:1927396-1927085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 134
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr9:8857884-8857572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
79, 116
               

               
Conread position:
               
5-134
               

               
Cow position:
               
chr9:8938423-8938552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr9:54676073-54675820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
63, 78
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr9:10090373-10090130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr9:22310833-22311097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 78
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr9:22291969-22292242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 99
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr9:47560538-47560271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr9:62646441-62646761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
88, 183
               

               
Conread position:
               
10-279
               

               
Cow position:
               
chr9:11111116-11111369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
189, 59
               

               
Conread position:
               
29-266
               

               
Cow position:
               
chr9:31133973-31133745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
157-328
               

               
Cow position:
               
chr9:54670004-54669835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chrX:7979489-7979724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
104, 82
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chrX:24577263-24576965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 115
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chrX:21901735-21902032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 135
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chrX:7076695-7076366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chrX:45866985-45867263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
35-328
               

               
Cow position:
               
chrX:7935860-7936157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
45-332
               

               
Cow position:
               
chrX:18052111-18052401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 22