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Cow genome map

           
Conread name:
           
rgul0127_e2.y1
        

               
Conread position:
               
102-349
               

               
Cow position:
               
chr1:61590446-61590686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
112-285
               

               
Cow position:
               
chr1:61729510-61729678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr1:13581250-13581474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr1:24653011-24652780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 65
               

               
Conread position:
               
116-340
               

               
Cow position:
               
chr1:27112691-27112911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr1:46837366-46837141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
119-262
               

               
Cow position:
               
chr1:89482691-89482549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
78, 74
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr1:40436086-40436307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
129-300
               

               
Cow position:
               
chr1:33390005-33389841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr1:89732792-89732996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
80-335
               

               
Cow position:
               
chr10:22575360-22575608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
89-347
               

               
Cow position:
               
chr10:11822541-11822285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
113-259
               

               
Cow position:
               
chr10:14844527-14844382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr10:39877652-39877883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr10:25339865-25339633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
117-248
               

               
Cow position:
               
chr10:42642358-42642229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
78, 61
               

               
Conread position:
               
117-338
               

               
Cow position:
               
chr10:29100962-29101192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
122-290
               

               
Cow position:
               
chr10:6258735-6258898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr10:38343608-38343828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
122-351
               

               
Cow position:
               
chr10:21079372-21079144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
113-220
               

               
Cow position:
               
chr11:78672426-78672533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr11:17281070-17281299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-345
               

               
Cow position:
               
chr11:37802471-37802241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr11:27657846-27657603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr11:1488764-1488993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 65
               

               
Conread position:
               
117-260
               

               
Cow position:
               
chr11:63977095-63976953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 56
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr11:3226995-3226774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
108-345
               

               
Cow position:
               
chr12:35346231-35345998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
89, 71
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr12:1776269-1776494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr12:48471191-48471421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
127-345
               

               
Cow position:
               
chr12:17980390-17980170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
106-286
               

               
Cow position:
               
chr13:36348653-36348832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
122-327
               

               
Cow position:
               
chr13:21907732-21907939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr13:43981620-43981844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr13:50110920-50110696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
72, 57
               

               
Conread position:
               
113-333
               

               
Cow position:
               
chr14:21380918-21381137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr14:44380693-44380469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 61
               

               
Conread position:
               
122-276
               

               
Cow position:
               
chr14:30704820-30704974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
74, 56
               

               
Conread position:
               
129-347
               

               
Cow position:
               
chr14:38814155-38814375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
130-271
               

               
Cow position:
               
chr14:42122243-42122383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 49
               

               
Conread position:
               
108-340
               

               
Cow position:
               
chr15:36669058-36668833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
112-347
               

               
Cow position:
               
chr15:35646334-35646562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 67
               

               
Conread position:
               
113-262
               

               
Cow position:
               
chr15:31859607-31859755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr15:7929918-7929691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr15:36624507-36624728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr15:53299807-53299572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
119-347
               

               
Cow position:
               
chr15:24795160-24794942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
122-321
               

               
Cow position:
               
chr15:14575962-14576157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr15:3181727-3181943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr15:14581023-14581244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
123-347
               

               
Cow position:
               
chr15:500510-500291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr16:28158574-28158348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr16:39824928-39824699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 64
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr16:51085164-51084931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr16:19149599-19149826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
119-347
               

               
Cow position:
               
chr16:1959621-1959841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 60
               

               
Conread position:
               
122-351
               

               
Cow position:
               
chr16:10967109-10967327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
130-344
               

               
Cow position:
               
chr16:41572383-41572166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 56
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr17:15372798-15372562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
113-262
               

               
Cow position:
               
chr17:4345998-4346146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
84, 74
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr17:16898496-16898733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 121
               

               
Conread position:
               
121-272
               

               
Cow position:
               
chr17:19366831-19366680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
122-359
               

               
Cow position:
               
chr17:8203502-8203271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
205, 57
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr18:51461261-51461488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr18:35054909-35054685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
122-338
               

               
Cow position:
               
chr18:12237956-12237747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
171, 65
               

               
Conread position:
               
113-298
               

               
Cow position:
               
chr19:14159370-14159552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 59
               

               
Conread position:
               
113-306
               

               
Cow position:
               
chr19:3139764-3139572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr19:2586988-2586771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
122-272
               

               
Cow position:
               
chr19:11900496-11900348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
122-341
               

               
Cow position:
               
chr19:35383830-35384054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr19:48859978-48860198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 56
               

               
Conread position:
               
124-347
               

               
Cow position:
               
chr19:1660446-1660230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr2:41181350-41181123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr2:13553804-13553575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr2:905499-905269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 122
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr2:15575610-15575847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
57, 126
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr2:43446197-43445971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
115-238
               

               
Cow position:
               
chr2:23491974-23491853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
117-341
               

               
Cow position:
               
chr2:12362749-12362975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
122-258
               

               
Cow position:
               
chr2:60367545-60367678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
122-339
               

               
Cow position:
               
chr2:72905987-72906202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 54
               

               
Conread position:
               
122-341
               

               
Cow position:
               
chr2:44650475-44650258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr2:45966815-45967025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr2:72187272-72187495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
75, 54
               

               
Conread position:
               
112-347
               

               
Cow position:
               
chr20:15067207-15066974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
113-285
               

               
Cow position:
               
chr20:19214734-19214563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
113-333
               

               
Cow position:
               
chr20:9547401-9547183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr20:41363888-41364124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
98, 66
               

               
Conread position:
               
113-351
               

               
Cow position:
               
chr20:13499862-13499625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 65
               

               
Conread position:
               
117-344
               

               
Cow position:
               
chr20:12042173-12041949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
112-339
               

               
Cow position:
               
chr21:20742772-20742996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
113-349
               

               
Cow position:
               
chr21:468764-468531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 74
               

               
Conread position:
               
117-339
               

               
Cow position:
               
chr21:21701773-21701553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 61
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr21:34655691-34655466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 62
               

               
Conread position:
               
117-350
               

               
Cow position:
               
chr21:218870-218635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr21:34000229-34000459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 54
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr22:8736654-8736880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr22:34601283-34601056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr22:29037353-29037135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr22:3272401-3272640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
84, 114
               

               
Conread position:
               
129-347
               

               
Cow position:
               
chr22:290023-290236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
122-264
               

               
Cow position:
               
chr23:11074795-11074936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 56
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr23:26838500-26838279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr23:31648349-31648570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
82-347
               

               
Cow position:
               
chr24:6323539-6323808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
117-341
               

               
Cow position:
               
chr24:17410236-17410010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr24:17957771-17957997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
122-271
               

               
Cow position:
               
chr24:35840118-35840270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 117
               

               
Conread position:
               
123-341
               

               
Cow position:
               
chr24:14870563-14870775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
74-347
               

               
Cow position:
               
chr25:17558783-17559054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
113-289
               

               
Cow position:
               
chr25:29358225-29358051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr25:35627704-35627899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 74
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr25:26929017-26928787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
124-347
               

               
Cow position:
               
chr25:33575206-33575424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 50
               

               
Conread position:
               
106-341
               

               
Cow position:
               
chr26:4603399-4603633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
114, 73
               

               
Conread position:
               
113-285
               

               
Cow position:
               
chr26:9842656-9842824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr26:21824929-21825162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 73
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr26:19349767-19349992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
127-253
               

               
Cow position:
               
chr27:11486938-11486812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
113-333
               

               
Cow position:
               
chr28:11504500-11504718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 56
               

               
Conread position:
               
113-335
               

               
Cow position:
               
chr28:524038-523812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr28:5800033-5799800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr28:25761205-25760980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
118-341
               

               
Cow position:
               
chr28:5766467-5766245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
207, 117
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr29:32287951-32287727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr29:647502-647285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr29:4517249-4517036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 48
               

               
Conread position:
               
72-342
               

               
Cow position:
               
chr3:2906097-2906369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr3:15188430-15188261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
113-335
               

               
Cow position:
               
chr3:64356345-64356564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-348
               

               
Cow position:
               
chr3:55893009-55892775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
118-341
               

               
Cow position:
               
chr3:18354418-18354628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
118-341
               

               
Cow position:
               
chr3:24192680-24192902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
119-324
               

               
Cow position:
               
chr3:56338658-56338862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 60
               

               
Conread position:
               
122-292
               

               
Cow position:
               
chr3:70197834-70197665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
122-319
               

               
Cow position:
               
chr3:29580221-29580024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
122-340
               

               
Cow position:
               
chr3:70888870-70888649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
73, 55
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr3:40103616-40103829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
176, 51
               

               
Conread position:
               
82-347
               

               
Cow position:
               
chr4:9846753-9847016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
102-341
               

               
Cow position:
               
chr4:50976040-50975815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
105-344
               

               
Cow position:
               
chr4:20067295-20067533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
113-219
               

               
Cow position:
               
chr4:19252995-19252888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr4:46666344-46666176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr4:14755247-14755480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr4:22742854-22742618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
113-361
               

               
Cow position:
               
chr4:20605103-20604868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
234, 15
               

               
Conread position:
               
115-344
               

               
Cow position:
               
chr4:19094400-19094172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr4:41191212-41191436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr4:34222153-34221934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
124-340
               

               
Cow position:
               
chr4:6207013-6206805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
113-338
               

               
Cow position:
               
chr5:11115247-11115461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
113-345
               

               
Cow position:
               
chr5:7142546-7142769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
117-344
               

               
Cow position:
               
chr5:18400182-18400401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
77, 41
               

               
Conread position:
               
117-348
               

               
Cow position:
               
chr5:23230502-23230277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
122-280
               

               
Cow position:
               
chr5:3254088-3254247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
129-347
               

               
Cow position:
               
chr5:50948144-50947926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
113-288
               

               
Cow position:
               
chr6:15925897-15926063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr6:18972799-18973028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 74
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr6:38273233-38273000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr6:69144233-69144002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
117-335
               

               
Cow position:
               
chr6:10645379-10645159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
79, 5
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr6:16672963-16672754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
119-345
               

               
Cow position:
               
chr6:17243642-17243865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 60
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr7:1608882-1609114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr7:21313665-21313429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 123
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr7:42871897-42871664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
114-340
               

               
Cow position:
               
chr7:30304616-30304406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
116-284
               

               
Cow position:
               
chr7:20533710-20533547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
148, 76
               

               
Conread position:
               
117-344
               

               
Cow position:
               
chr7:68439774-68439554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
119-258
               

               
Cow position:
               
chr7:949291-949153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
119-347
               

               
Cow position:
               
chr7:43396664-43396892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 60
               

               
Conread position:
               
129-333
               

               
Cow position:
               
chr7:67814214-67814028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
113-327
               

               
Cow position:
               
chr8:58184674-58184879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
113-333
               

               
Cow position:
               
chr8:47674777-47674560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr8:48103783-48103561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 68
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr8:47887785-47887558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr8:2387130-2386897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
84, 74
               

               
Conread position:
               
117-341
               

               
Cow position:
               
chr8:24914384-24914607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
117-344
               

               
Cow position:
               
chr8:8310148-8309934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr8:46217818-46218046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
80, 5
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr8:16090765-16090554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr8:38576263-38576494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
142, 67
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr8:38584187-38584413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
74, 52
               

               
Conread position:
               
129-301
               

               
Cow position:
               
chr8:19190606-19190441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
130-321
               

               
Cow position:
               
chr8:35213929-35213739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
113-286
               

               
Cow position:
               
chr9:59509567-59509739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
113-300
               

               
Cow position:
               
chr9:54681153-54681338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
84, 64
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr9:44819730-44819532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
106, 65
               

               
Conread position:
               
129-344
               

               
Cow position:
               
chr9:29332824-29332610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
108-344
               

               
Cow position:
               
chrX:32327668-32327435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
113-333
               

               
Cow position:
               
chrX:45418747-45418964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chrX:17666297-17666526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chrX:42477314-42477547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
117-344
               

               
Cow position:
               
chrX:20798800-20798574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
79, 61
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chrX:18841503-18841733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
53, 70
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chrX:16780773-16780551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
124-298
               

               
Cow position:
               
chrX:41887509-41887677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 51