Cow genome map
| Conread name: | rjej36b_i16.y1 |
| Conread position: | 19-219 |
| Cow position: | chr10:24871938-24871733 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 6 |
| Conread position: | 124-404 |
| Cow position: | chr11:16540811-16540518 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 271-398 |
| Cow position: | chr11:71455538-71455410 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 13-219 |
| Cow position: | chr12:2805001-2805214 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 20-244 |
| Cow position: | chr12:9413742-9413977 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 14-219 |
| Cow position: | chr13:47964306-47964080 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 195 |
| Conread position: | 20-219 |
| Cow position: | chr13:6389277-6389497 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 59-219 |
| Cow position: | chr13:18243813-18243980 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 4-219 |
| Cow position: | chr14:10721784-10721555 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 6-219 |
| Cow position: | chr16:21905264-21905034 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 20-219 |
| Cow position: | chr16:20025546-20025315 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 78-216 |
| Cow position: | chr16:13306846-13306992 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 78-219 |
| Cow position: | chr16:14685365-14685521 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 9-219 |
| Cow position: | chr17:10037564-10037354 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 10, 68 |
| Conread position: | 13-219 |
| Cow position: | chr17:5895782-5896001 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 20-219 |
| Cow position: | chr17:21312701-21312901 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 143, 68 |
| Conread position: | 13-219 |
| Cow position: | chr18:21768692-21768466 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 70-219 |
| Cow position: | chr18:50082258-50082414 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 79-246 |
| Cow position: | chr18:19193372-19193557 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 98-398 |
| Cow position: | chr18:1954632-1954936 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 13-215 |
| Cow position: | chr19:42726434-42726222 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 91 |
| Conread position: | 22-219 |
| Cow position: | chr2:46222896-46223098 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 103 |
| Conread position: | 91-219 |
| Cow position: | chr2:333090-333216 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 113-219 |
| Cow position: | chr2:15250158-15250050 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 49-220 |
| Cow position: | chr20:14735767-14735586 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 79-219 |
| Cow position: | chr23:13511749-13511606 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 6-219 |
| Cow position: | chr24:19187030-19186805 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 7 |
| Conread position: | 45-218 |
| Cow position: | chr24:27267662-27267476 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 20-219 |
| Cow position: | chr25:2111145-2110943 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 113-398 |
| Cow position: | chr25:12755514-12755813 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 147 |
| Conread position: | 1-398 |
| Cow position: | chr27:26087150-26087558 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 20-219 |
| Cow position: | chr27:14343597-14343378 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 109 |
| Conread position: | 6-219 |
| Cow position: | chr28:24996490-24996714 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 20-219 |
| Cow position: | chr28:11828853-11829064 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 6-219 |
| Cow position: | chr29:7040757-7040969 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 20-219 |
| Cow position: | chr29:32963639-32963425 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 194 |
| Conread position: | 120-246 |
| Cow position: | chr29:11647059-11646929 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 100, 45 |
| Conread position: | 272-404 |
| Cow position: | chr29:34736698-34736834 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 4-219 |
| Cow position: | chr3:6853438-6853663 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 103 |
| Conread position: | 6-219 |
| Cow position: | chr3:29813325-29813089 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 6-219 |
| Cow position: | chr4:19558795-19558578 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 7 |
| Conread position: | 26-219 |
| Cow position: | chr4:22744390-22744186 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 57-219 |
| Cow position: | chr4:23854220-23854057 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 16 |
| Conread position: | 79-246 |
| Cow position: | chr4:46456048-46456230 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 20-219 |
| Cow position: | chr5:19294397-19294594 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 143, 11 |
| Conread position: | 61-246 |
| Cow position: | chr5:69731559-69731366 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 268-404 |
| Cow position: | chr6:7009527-7009395 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-219 |
| Cow position: | chr7:37394462-37394227 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 20-219 |
| Cow position: | chr7:56838379-56838584 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 25-219 |
| Cow position: | chr7:24220774-24220580 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 91, 5 |
| Conread position: | 25-219 |
| Cow position: | chr8:36465289-36465085 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 3-219 |
| Cow position: | chr9:28773048-28773282 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 13-219 |
| Cow position: | chr9:8524777-8524997 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 60-219 |
| Cow position: | chr9:1952274-1952108 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 88-219 |
| Cow position: | chr9:36843812-36843948 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 13-219 |
| Cow position: | chrX:23497553-23497773 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 13-230 |
| Cow position: | chrX:25282900-25283129 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 20-216 |
| Cow position: | chrX:7718963-7718754 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 76-219 |
| Cow position: | chrX:11656137-11655987 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 45 |