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Cow genome map

           
Conread name:
           
rnca04b_c8.y1
        

               
Conread position:
               
3-337
               

               
Cow position:
               
chr10:60488966-60489304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
7-455
               

               
Cow position:
               
chr10:14951042-14951494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 36
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr10:28892109-28891797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 118
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr10:24299536-24299185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 171
               

               
Conread position:
               
9-452
               

               
Cow position:
               
chr10:15862947-15862524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 60
               

               
Conread position:
               
9-455
               

               
Cow position:
               
chr10:49309862-49310314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 183
               

               
Conread position:
               
11-454
               

               
Cow position:
               
chr10:20536761-20537201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 106
               

               
Conread position:
               
18-227
               

               
Cow position:
               
chr10:42682811-42683014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
39-223
               

               
Cow position:
               
chr10:42663640-42663820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
43-287
               

               
Cow position:
               
chr10:38152090-38151847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
54-408
               

               
Cow position:
               
chr10:3544179-3543840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
192, 98
               

               
Conread position:
               
77-348
               

               
Cow position:
               
chr10:46190775-46191030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
82-335
               

               
Cow position:
               
chr10:4499097-4499348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
92, 62
               

               
Conread position:
               
100-343
               

               
Cow position:
               
chr10:54126869-54127113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
196, 85
               

               
Conread position:
               
106-331
               

               
Cow position:
               
chr10:61296708-61296941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 83
               

               
Conread position:
               
110-331
               

               
Cow position:
               
chr10:42627880-42628108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr10:25497780-25498130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 72
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr10:62216031-62216383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr10:62777772-62778117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr10:34685325-34685673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
111-452
               

               
Cow position:
               
chr10:42735935-42736281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
122-360
               

               
Cow position:
               
chr10:34318822-34318596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
229, 62
               

               
Conread position:
               
251-454
               

               
Cow position:
               
chr10:42683014-42683208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr11:7686846-7687226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr11:7306589-7306155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
3-452
               

               
Cow position:
               
chr11:44507136-44507585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
9-182
               

               
Cow position:
               
chr11:1601844-1602013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr11:32682628-32682907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr11:81853638-81853320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 171
               

               
Conread position:
               
9-454
               

               
Cow position:
               
chr11:3237514-3237959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
217, 15
               

               
Conread position:
               
9-454
               

               
Cow position:
               
chr11:65162573-65162120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 27
               

               
Conread position:
               
11-335
               

               
Cow position:
               
chr11:72017178-72017494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 172
               

               
Conread position:
               
16-182
               

               
Cow position:
               
chr11:11124428-11124593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
19-454
               

               
Cow position:
               
chr11:25180065-25180494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
276, 114
               

               
Conread position:
               
22-453
               

               
Cow position:
               
chr11:42428311-42428749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 40
               

               
Conread position:
               
89-452
               

               
Cow position:
               
chr11:25526635-25526989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
95-455
               

               
Cow position:
               
chr11:87126894-87127259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
211, 32
               

               
Conread position:
               
100-453
               

               
Cow position:
               
chr11:72005093-72005454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
195, 13
               

               
Conread position:
               
106-455
               

               
Cow position:
               
chr11:24677115-24677472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 46
               

               
Conread position:
               
110-309
               

               
Cow position:
               
chr11:52462124-52462323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 77
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr11:8888087-8887735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr11:9660319-9659979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
111-448
               

               
Cow position:
               
chr11:21466163-21466491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
184, 70
               

               
Conread position:
               
114-373
               

               
Cow position:
               
chr11:9220958-9220702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
181, 65
               

               
Conread position:
               
114-448
               

               
Cow position:
               
chr11:49076595-49076254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
184, 70
               

               
Conread position:
               
119-359
               

               
Cow position:
               
chr11:56178984-56179219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
166, 68
               

               
Conread position:
               
144-335
               

               
Cow position:
               
chr11:75919645-75919838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
144-336
               

               
Cow position:
               
chr11:7394214-7394398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
156, 40
               

               
Conread position:
               
144-384
               

               
Cow position:
               
chr11:12352198-12351950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr12:2840345-2840029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 152
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr12:48404017-48404362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 21
               

               
Conread position:
               
9-451
               

               
Cow position:
               
chr12:1867713-1868163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 59
               

               
Conread position:
               
44-227
               

               
Cow position:
               
chr12:19868003-19868181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
44-455
               

               
Cow position:
               
chr12:3630479-3630896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
208, 61
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr12:16326080-16326395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
202, 18
               

               
Conread position:
               
98-455
               

               
Cow position:
               
chr12:22331952-22332319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
106-393
               

               
Cow position:
               
chr12:22121059-22121349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
110-389
               

               
Cow position:
               
chr12:45260994-45261275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr12:26947904-26947565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
222, 68
               

               
Conread position:
               
111-455
               

               
Cow position:
               
chr12:21901322-21901658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
240, 68
               

               
Conread position:
               
115-349
               

               
Cow position:
               
chr12:21058630-21058399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
181, 74
               

               
Conread position:
               
168-335
               

               
Cow position:
               
chr12:9709080-9708910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 153
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr13:41606515-41606736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
3-453
               

               
Cow position:
               
chr13:34768191-34767745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
9-274
               

               
Cow position:
               
chr13:5282877-5283132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
9-375
               

               
Cow position:
               
chr13:48356349-48356714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
10-423
               

               
Cow position:
               
chr13:47859350-47859773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
12-396
               

               
Cow position:
               
chr13:15081142-15080769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
326, 42
               

               
Conread position:
               
59-368
               

               
Cow position:
               
chr13:33279266-33278969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 70
               

               
Conread position:
               
82-455
               

               
Cow position:
               
chr13:34187590-34187207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
214, 7
               

               
Conread position:
               
90-454
               

               
Cow position:
               
chr13:2909331-2908963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
94-455
               

               
Cow position:
               
chr13:3276272-3276640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
133, 5
               

               
Conread position:
               
95-452
               

               
Cow position:
               
chr13:34692291-34692641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
192, 16
               

               
Conread position:
               
110-325
               

               
Cow position:
               
chr13:34935978-34936195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr13:13046677-13046339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
88, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr13:33928398-33928070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
111-453
               

               
Cow position:
               
chr13:34143513-34143179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
240, 70
               

               
Conread position:
               
114-427
               

               
Cow position:
               
chr13:62328446-62328126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
181, 67
               

               
Conread position:
               
117-448
               

               
Cow position:
               
chr13:46733200-46732870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
153, 67
               

               
Conread position:
               
146-455
               

               
Cow position:
               
chr13:31831776-31832089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
155-455
               

               
Cow position:
               
chr13:33825563-33825256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
140, 26
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr14:35928082-35928415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
9-455
               

               
Cow position:
               
chr14:14310150-14309707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
9-455
               

               
Cow position:
               
chr14:14423108-14422650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
31-320
               

               
Cow position:
               
chr14:49045767-49046058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
48-448
               

               
Cow position:
               
chr14:44616239-44616644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
50-330
               

               
Cow position:
               
chr14:41406786-41407053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 76
               

               
Conread position:
               
76-453
               

               
Cow position:
               
chr14:47623563-47623926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
275, 13
               

               
Conread position:
               
82-384
               

               
Cow position:
               
chr14:40338664-40338974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
82-455
               

               
Cow position:
               
chr14:45767000-45767361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
90-335
               

               
Cow position:
               
chr14:44780936-44780693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
220, 94
               

               
Conread position:
               
90-335
               

               
Cow position:
               
chr14:44783276-44783033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
220, 94
               

               
Conread position:
               
98-378
               

               
Cow position:
               
chr14:22018385-22018662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
207, 20
               

               
Conread position:
               
101-455
               

               
Cow position:
               
chr14:44579937-44580303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 65
               

               
Conread position:
               
105-358
               

               
Cow position:
               
chr14:46083620-46083872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
190, 58
               

               
Conread position:
               
105-359
               

               
Cow position:
               
chr14:11467601-11467845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
232, 74
               

               
Conread position:
               
105-455
               

               
Cow position:
               
chr14:46463786-46464158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
6, 83
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr14:44129950-44130282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
110-454
               

               
Cow position:
               
chr14:23691221-23690870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr14:13660973-13660634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
226, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr14:41085784-41085450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
222, 69
               

               
Conread position:
               
123-346
               

               
Cow position:
               
chr14:44376436-44376660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
133-455
               

               
Cow position:
               
chr14:35388117-35387777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
162, 12
               

               
Conread position:
               
134-373
               

               
Cow position:
               
chr14:44551067-44551309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
168, 47
               

               
Conread position:
               
204-453
               

               
Cow position:
               
chr14:36967360-36967613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
2-363
               

               
Cow position:
               
chr15:10479799-10479446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 114
               

               
Conread position:
               
3-388
               

               
Cow position:
               
chr15:15266900-15266527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
380, 59
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr15:27065154-27064940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
8-455
               

               
Cow position:
               
chr15:40104353-40104809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 112
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr15:12613973-12614282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr15:21816847-21816500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr15:45885719-45886062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chr15:36627712-36627348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
9-455
               

               
Cow position:
               
chr15:1236323-1236759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 173
               

               
Conread position:
               
11-175
               

               
Cow position:
               
chr15:684612-684776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
11-368
               

               
Cow position:
               
chr15:4631024-4630664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 47
               

               
Conread position:
               
11-407
               

               
Cow position:
               
chr15:323824-324219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 103
               

               
Conread position:
               
13-455
               

               
Cow position:
               
chr15:11299792-11299351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
192, 104
               

               
Conread position:
               
14-455
               

               
Cow position:
               
chr15:21447977-21448433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 26
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr15:12364309-12364566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
230, 62
               

               
Conread position:
               
20-384
               

               
Cow position:
               
chr15:38958116-38957759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 110
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr15:51799396-51799593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
31-224
               

               
Cow position:
               
chr15:17683785-17683593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
33-423
               

               
Cow position:
               
chr15:32605898-32605504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
262, 106
               

               
Conread position:
               
45-290
               

               
Cow position:
               
chr15:8407487-8407744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
191, 140
               

               
Conread position:
               
80-343
               

               
Cow position:
               
chr15:1763048-1763314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
82-455
               

               
Cow position:
               
chr15:6077730-6078092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
246, 7
               

               
Conread position:
               
92-373
               

               
Cow position:
               
chr15:52635139-52635422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
242, 81
               

               
Conread position:
               
104-335
               

               
Cow position:
               
chr15:8098466-8098698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
113, 74
               

               
Conread position:
               
105-332
               

               
Cow position:
               
chr15:32680571-32680345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 78
               

               
Conread position:
               
105-374
               

               
Cow position:
               
chr15:6387309-6387037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 43
               

               
Conread position:
               
110-343
               

               
Cow position:
               
chr15:25790468-25790233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
64, 78
               

               
Conread position:
               
110-451
               

               
Cow position:
               
chr15:10788082-10787735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr15:6651023-6650690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr15:6278245-6277897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr15:6371833-6371481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr15:21960531-21960871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
219, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr15:25135445-25135116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr15:35681650-35681298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
151, 69
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr15:36647936-36648272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
239, 71
               

               
Conread position:
               
111-434
               

               
Cow position:
               
chr15:491171-490844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
147, 71
               

               
Conread position:
               
114-455
               

               
Cow position:
               
chr15:4794695-4795040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
119-455
               

               
Cow position:
               
chr15:35649196-35648856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
183, 55
               

               
Conread position:
               
127-363
               

               
Cow position:
               
chr15:2923522-2923761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
144-452
               

               
Cow position:
               
chr15:6184153-6184458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
151, 35
               

               
Conread position:
               
144-453
               

               
Cow position:
               
chr15:7895141-7894843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
201, 37
               

               
Conread position:
               
152-355
               

               
Cow position:
               
chr15:685200-685400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr16:49955962-49955615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 95
               

               
Conread position:
               
9-152
               

               
Cow position:
               
chr16:31717408-31717265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr16:44964609-44964928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
9-369
               

               
Cow position:
               
chr16:29981823-29982179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 25
               

               
Conread position:
               
9-452
               

               
Cow position:
               
chr16:44388980-44388546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
176, 84
               

               
Conread position:
               
10-332
               

               
Cow position:
               
chr16:5888015-5888332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
11-453
               

               
Cow position:
               
chr16:14422287-14422726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 55
               

               
Conread position:
               
12-246
               

               
Cow position:
               
chr16:45568420-45568651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
13-454
               

               
Cow position:
               
chr16:16029331-16029776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
80, 61
               

               
Conread position:
               
14-454
               

               
Cow position:
               
chr16:36233044-36232587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 36
               

               
Conread position:
               
20-348
               

               
Cow position:
               
chr16:44673560-44673886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
20-454
               

               
Cow position:
               
chr16:334560-334986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 28
               

               
Conread position:
               
42-338
               

               
Cow position:
               
chr16:13650814-13650529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
44-335
               

               
Cow position:
               
chr16:52816493-52816185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
95-455
               

               
Cow position:
               
chr16:7905300-7905655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
104, 16
               

               
Conread position:
               
97-335
               

               
Cow position:
               
chr16:49236476-49236241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
195, 17
               

               
Conread position:
               
106-378
               

               
Cow position:
               
chr16:49257952-49257678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
5, 77
               

               
Conread position:
               
110-454
               

               
Cow position:
               
chr16:36282074-36282407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr16:19714184-19713836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
190, 84
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr16:20255647-20255295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
111-450
               

               
Cow position:
               
chr16:11051848-11052180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
223, 33
               

               
Conread position:
               
111-454
               

               
Cow position:
               
chr16:29676644-29676294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
176, 70
               

               
Conread position:
               
111-454
               

               
Cow position:
               
chr16:39818287-39818635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
184, 74
               

               
Conread position:
               
114-373
               

               
Cow position:
               
chr16:29031573-29031828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
181, 70
               

               
Conread position:
               
117-268
               

               
Cow position:
               
chr16:25152496-25152642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
123-415
               

               
Cow position:
               
chr16:51083234-51083524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
166, 65
               

               
Conread position:
               
126-363
               

               
Cow position:
               
chr16:16687537-16687766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
127, 58
               

               
Conread position:
               
141-335
               

               
Cow position:
               
chr16:12302775-12302580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
144-447
               

               
Cow position:
               
chr16:54647030-54647336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
135, 40
               

               
Conread position:
               
3-455
               

               
Cow position:
               
chr17:153336-152866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 181
               

               
Conread position:
               
9-364
               

               
Cow position:
               
chr17:15416976-15417328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
9-378
               

               
Cow position:
               
chr17:31200945-31200575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
9-452
               

               
Cow position:
               
chr17:2146358-2146798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
266, 86
               

               
Conread position:
               
9-455
               

               
Cow position:
               
chr17:2587450-2587911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 129
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr17:4080773-4081121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 68
               

               
Conread position:
               
11-450
               

               
Cow position:
               
chr17:18302636-18302189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 192
               

               
Conread position:
               
13-360
               

               
Cow position:
               
chr17:3694547-3694197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
21-454
               

               
Cow position:
               
chr17:42263700-42264121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 152
               

               
Conread position:
               
51-373
               

               
Cow position:
               
chr17:20400849-20401161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
73-423
               

               
Cow position:
               
chr17:12671134-12670775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
219, 41
               

               
Conread position:
               
75-453
               

               
Cow position:
               
chr17:14326279-14325905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
220, 69
               

               
Conread position:
               
86-455
               

               
Cow position:
               
chr17:2286594-2286965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
184, 25
               

               
Conread position:
               
97-455
               

               
Cow position:
               
chr17:6002785-6002425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
100-293
               

               
Cow position:
               
chr17:20024239-20024427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
102, 79
               

               
Conread position:
               
110-343
               

               
Cow position:
               
chr17:455628-455389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
110-452
               

               
Cow position:
               
chr17:32024946-32024610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr17:1945422-1945764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 23
               

               
Conread position:
               
111-410
               

               
Cow position:
               
chr17:44853669-44853383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
240, 68
               

               
Conread position:
               
111-453
               

               
Cow position:
               
chr17:15370324-15370667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
191, 15
               

               
Conread position:
               
111-454
               

               
Cow position:
               
chr17:27345049-27345393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
184, 70
               

               
Conread position:
               
111-455
               

               
Cow position:
               
chr17:22430226-22429893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
223, 68
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr18:18896893-18897177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr18:29762817-29763153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 78
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chr18:43200128-43200487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 104
               

               
Conread position:
               
9-375
               

               
Cow position:
               
chr18:45958034-45958398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 171
               

               
Conread position:
               
10-253
               

               
Cow position:
               
chr18:2887669-2887434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
16-293
               

               
Cow position:
               
chr18:16876606-16876867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
20-227
               

               
Cow position:
               
chr18:42072752-42072548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
79-455
               

               
Cow position:
               
chr18:39747999-39748378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
35, 106
               

               
Conread position:
               
106-349
               

               
Cow position:
               
chr18:16660579-16660334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
106-349
               

               
Cow position:
               
chr18:29236198-29236442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
110-388
               

               
Cow position:
               
chr18:33335300-33335584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr18:32293226-32293571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
109, 77
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr18:33358310-33358664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr18:53784940-53785275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
241, 71
               

               
Conread position:
               
111-452
               

               
Cow position:
               
chr18:51257445-51257776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
240, 70
               

               
Conread position:
               
135-424
               

               
Cow position:
               
chr18:6869937-6869656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
197, 46
               

               
Conread position:
               
148-455
               

               
Cow position:
               
chr18:48221373-48221674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
184, 31
               

               
Conread position:
               
243-346
               

               
Cow position:
               
chr18:2887266-2887161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-453
               

               
Cow position:
               
chr19:20124993-20125433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
9-188
               

               
Cow position:
               
chr19:8229978-8229799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr19:30754260-30754468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
9-429
               

               
Cow position:
               
chr19:42649721-42649293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 54
               

               
Conread position:
               
13-363
               

               
Cow position:
               
chr19:32224075-32223723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 48
               

               
Conread position:
               
24-384
               

               
Cow position:
               
chr19:562353-561995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 125
               

               
Conread position:
               
31-421
               

               
Cow position:
               
chr19:1492674-1492277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
145, 46
               

               
Conread position:
               
44-383
               

               
Cow position:
               
chr19:6552784-6553116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 138
               

               
Conread position:
               
51-274
               

               
Cow position:
               
chr19:35316321-35316107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
54-343
               

               
Cow position:
               
chr19:36476745-36477027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 131
               

               
Conread position:
               
56-373
               

               
Cow position:
               
chr19:15952662-15952963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
272, 25
               

               
Conread position:
               
94-452
               

               
Cow position:
               
chr19:27053402-27053034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
95-408
               

               
Cow position:
               
chr19:33843-34155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
99-455
               

               
Cow position:
               
chr19:1031554-1031915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
110-452
               

               
Cow position:
               
chr19:801443-801788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
182, 79
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr19:4252909-4252557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr19:32238394-32238064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
101, 71
               

               
Conread position:
               
114-413
               

               
Cow position:
               
chr19:76799-76495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
181, 84
               

               
Conread position:
               
114-453
               

               
Cow position:
               
chr19:416109-416444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
237, 179
               

               
Conread position:
               
119-451
               

               
Cow position:
               
chr19:35376016-35376351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
144-455
               

               
Cow position:
               
chr19:351080-350775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 35
               

               
Conread position:
               
247-454
               

               
Cow position:
               
chr19:4533154-4532944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr20:35103268-35103703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
3-454
               

               
Cow position:
               
chr20:20756131-20755676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
9-337
               

               
Cow position:
               
chr20:28593030-28593359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 177
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr20:9954959-9954599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
181, 117
               

               
Conread position:
               
11-422
               

               
Cow position:
               
chr20:22718359-22717955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
327, 23
               

               
Conread position:
               
13-406
               

               
Cow position:
               
chr20:22205838-22206225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 66
               

               
Conread position:
               
82-455
               

               
Cow position:
               
chr20:11276916-11276531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
91-455
               

               
Cow position:
               
chr20:3252752-3252382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
204, 20
               

               
Conread position:
               
99-455
               

               
Cow position:
               
chr20:24613966-24614307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
103-454
               

               
Cow position:
               
chr20:13681690-13681328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
149, 85
               

               
Conread position:
               
106-332
               

               
Cow position:
               
chr20:10103155-10102932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 74
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr20:4800218-4799888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
147, 69
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr20:5483617-5483949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
185, 107
               

               
Conread position:
               
139-455
               

               
Cow position:
               
chr20:19006176-19005872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
205, 42
               

               
Conread position:
               
141-455
               

               
Cow position:
               
chr20:5575130-5575440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr21:28839082-28838874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
36, 31
               

               
Conread position:
               
9-167
               

               
Cow position:
               
chr21:28874015-28874171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
9-291
               

               
Cow position:
               
chr21:36713840-36714107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
9-303
               

               
Cow position:
               
chr21:18820685-18820397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 28
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chr21:35089112-35089476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 29
               

               
Conread position:
               
9-454
               

               
Cow position:
               
chr21:358438-358892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
226, 105
               

               
Conread position:
               
16-295
               

               
Cow position:
               
chr21:26617197-26616935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 118
               

               
Conread position:
               
25-293
               

               
Cow position:
               
chr21:46908655-46908390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
57-446
               

               
Cow position:
               
chr21:20745266-20744870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 122
               

               
Conread position:
               
77-346
               

               
Cow position:
               
chr21:11053084-11052830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
254, 105
               

               
Conread position:
               
81-453
               

               
Cow position:
               
chr21:4223180-4222822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
270, 100
               

               
Conread position:
               
82-453
               

               
Cow position:
               
chr21:4076359-4076721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
235, 29
               

               
Conread position:
               
90-293
               

               
Cow position:
               
chr21:25286109-25286306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
92-455
               

               
Cow position:
               
chr21:35595887-35596257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
95-455
               

               
Cow position:
               
chr21:2717157-2716793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
200, 84
               

               
Conread position:
               
108-335
               

               
Cow position:
               
chr21:4590455-4590227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
187, 5
               

               
Conread position:
               
110-347
               

               
Cow position:
               
chr21:2542363-2542126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
185, 68
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr21:2530595-2530252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
223, 62
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr21:4455609-4455932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
290, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr21:13124455-13124124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
107, 68
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr21:29086024-29086368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
185, 69
               

               
Conread position:
               
111-298
               

               
Cow position:
               
chr21:23809285-23809471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
142, 76
               

               
Conread position:
               
111-455
               

               
Cow position:
               
chr21:34259686-34259336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
178, 70
               

               
Conread position:
               
144-455
               

               
Cow position:
               
chr21:3614872-3615170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
159-349
               

               
Cow position:
               
chr21:2521336-2521522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
172, 25
               

               
Conread position:
               
9-298
               

               
Cow position:
               
chr22:36266639-36266926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr22:36272752-36273059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr22:7276765-7277110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 170
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr22:27334719-27334925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
16-455
               

               
Cow position:
               
chr22:33350426-33350870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 63
               

               
Conread position:
               
17-446
               

               
Cow position:
               
chr22:308994-309417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 52
               

               
Conread position:
               
51-454
               

               
Cow position:
               
chr22:26242580-26242967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
57-267
               

               
Cow position:
               
chr22:1624367-1624562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
104-454
               

               
Cow position:
               
chr22:1046722-1047068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
162, 75
               

               
Conread position:
               
110-349
               

               
Cow position:
               
chr22:44608977-44609215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
183, 31
               

               
Conread position:
               
110-355
               

               
Cow position:
               
chr22:1285593-1285351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
175, 72
               

               
Conread position:
               
110-428
               

               
Cow position:
               
chr22:42770914-42771224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
234, 25
               

               
Conread position:
               
110-452
               

               
Cow position:
               
chr22:1318771-1319096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
241, 66
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr22:36534613-36534263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr22:118444-118112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
241, 62
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr22:5672104-5672442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
210, 69
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr22:39882816-39882469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
150, 77
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr22:40380560-40380901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
241, 71
               

               
Conread position:
               
111-378
               

               
Cow position:
               
chr22:3307377-3307105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
124-454
               

               
Cow position:
               
chr22:45880757-45880418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
172, 34
               

               
Conread position:
               
129-360
               

               
Cow position:
               
chr22:1294139-1293904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
171, 53
               

               
Conread position:
               
144-455
               

               
Cow position:
               
chr22:36736157-36736477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
183-450
               

               
Cow position:
               
chr22:47639996-47640274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
108, 240
               

               
Conread position:
               
9-253
               

               
Cow position:
               
chr23:7749415-7749649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
10-373
               

               
Cow position:
               
chr23:16617592-16617236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
38-290
               

               
Cow position:
               
chr23:19333135-19332885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
42-273
               

               
Cow position:
               
chr23:29154066-29153842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
42-274
               

               
Cow position:
               
chr23:22879889-22879658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
44-363
               

               
Cow position:
               
chr23:16482270-16481961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
195, 77
               

               
Conread position:
               
82-452
               

               
Cow position:
               
chr23:31595854-31595476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr23:810471-810670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
169, 69
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr23:2525099-2524764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
245, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr23:5875406-5875068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
227, 71
               

               
Conread position:
               
119-383
               

               
Cow position:
               
chr23:1025701-1025438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
176, 63
               

               
Conread position:
               
144-455
               

               
Cow position:
               
chr23:989250-988937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
148, 37
               

               
Conread position:
               
148-455
               

               
Cow position:
               
chr23:2765962-2765664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
204, 31
               

               
Conread position:
               
151-455
               

               
Cow position:
               
chr23:2045423-2045732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
144, 28
               

               
Conread position:
               
156-455
               

               
Cow position:
               
chr23:4276358-4276662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
139, 10
               

               
Conread position:
               
162-388
               

               
Cow position:
               
chr23:8981414-8981183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr24:36706948-36707269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 181
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr24:12289401-12289061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 109
               

               
Conread position:
               
9-359
               

               
Cow position:
               
chr24:1446907-1447258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 21
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr24:38635076-38635418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
9-453
               

               
Cow position:
               
chr24:14283251-14282803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
9-454
               

               
Cow position:
               
chr24:32330672-32331134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
177, 237
               

               
Conread position:
               
14-414
               

               
Cow position:
               
chr24:35842249-35841875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 64
               

               
Conread position:
               
20-383
               

               
Cow position:
               
chr24:39677775-39678142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
39-368
               

               
Cow position:
               
chr24:32126128-32125813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
39-454
               

               
Cow position:
               
chr24:17304234-17303782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 134
               

               
Conread position:
               
97-455
               

               
Cow position:
               
chr24:14583527-14583888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
110-293
               

               
Cow position:
               
chr24:36560809-36560630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
110-363
               

               
Cow position:
               
chr24:37216147-37216403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
185, 78
               

               
Conread position:
               
110-375
               

               
Cow position:
               
chr24:12798329-12798062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
185, 56
               

               
Conread position:
               
111-378
               

               
Cow position:
               
chr24:16649885-16649619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
209, 78
               

               
Conread position:
               
114-335
               

               
Cow position:
               
chr24:15392878-15392654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
109, 74
               

               
Conread position:
               
115-451
               

               
Cow position:
               
chr24:37301615-37301288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
236, 72
               

               
Conread position:
               
122-441
               

               
Cow position:
               
chr24:11157181-11156867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
215, 59
               

               
Conread position:
               
122-450
               

               
Cow position:
               
chr24:6057120-6057462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
170, 70
               

               
Conread position:
               
122-455
               

               
Cow position:
               
chr24:6351636-6351982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
126-363
               

               
Cow position:
               
chr24:17314872-17314638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
175, 61
               

               
Conread position:
               
144-363
               

               
Cow position:
               
chr24:6335149-6335369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
116, 37
               

               
Conread position:
               
144-455
               

               
Cow position:
               
chr24:17187026-17187335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 37
               

               
Conread position:
               
9-452
               

               
Cow position:
               
chr25:29357190-29357643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
13-348
               

               
Cow position:
               
chr25:11934263-11933909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 26
               

               
Conread position:
               
39-363
               

               
Cow position:
               
chr25:23346380-23346057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 224
               

               
Conread position:
               
39-410
               

               
Cow position:
               
chr25:21901412-21901783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
256, 100
               

               
Conread position:
               
63-373
               

               
Cow position:
               
chr25:18092353-18092666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 41
               

               
Conread position:
               
85-335
               

               
Cow position:
               
chr25:12760245-12760010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
95-441
               

               
Cow position:
               
chr25:18028230-18027896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
256, 86
               

               
Conread position:
               
95-450
               

               
Cow position:
               
chr25:33243280-33243611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
233, 50
               

               
Conread position:
               
106-382
               

               
Cow position:
               
chr25:18172694-18172981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 88
               

               
Conread position:
               
110-428
               

               
Cow position:
               
chr25:18061187-18060877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
226, 69
               

               
Conread position:
               
110-441
               

               
Cow position:
               
chr25:17469304-17468961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr25:11375948-11375600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr25:36239659-36239827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr26:12664932-12665284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr26:6601285-6601636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 117
               

               
Conread position:
               
10-455
               

               
Cow position:
               
chr26:9851339-9850882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 169
               

               
Conread position:
               
10-455
               

               
Cow position:
               
chr26:9854803-9854346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 169
               

               
Conread position:
               
39-339
               

               
Cow position:
               
chr26:16903976-16904267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
292, 148
               

               
Conread position:
               
78-369
               

               
Cow position:
               
chr26:28424554-28424271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
239, 32
               

               
Conread position:
               
99-453
               

               
Cow position:
               
chr26:19142145-19142488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
110-454
               

               
Cow position:
               
chr26:23605477-23605143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
210, 69
               

               
Conread position:
               
114-343
               

               
Cow position:
               
chr26:9846731-9846502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 73
               

               
Conread position:
               
114-454
               

               
Cow position:
               
chr26:35150444-35150106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
112, 67
               

               
Conread position:
               
146-453
               

               
Cow position:
               
chr26:12574932-12574631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
191, 35
               

               
Conread position:
               
158-455
               

               
Cow position:
               
chr26:20262330-20262613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
194, 29
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr27:25999798-25999441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 22
               

               
Conread position:
               
27-293
               

               
Cow position:
               
chr27:11963031-11963300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
44-292
               

               
Cow position:
               
chr27:3997110-3996863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 144
               

               
Conread position:
               
87-368
               

               
Cow position:
               
chr27:26556661-26556379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
212, 12
               

               
Conread position:
               
110-312
               

               
Cow position:
               
chr27:15331356-15331553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
185, 19
               

               
Conread position:
               
110-451
               

               
Cow position:
               
chr27:16438691-16439034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
119-368
               

               
Cow position:
               
chr27:25116602-25116849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
148, 7
               

               
Conread position:
               
135-451
               

               
Cow position:
               
chr27:27307768-27308071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
216, 46
               

               
Conread position:
               
144-455
               

               
Cow position:
               
chr27:27051067-27051368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
207, 37
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chr28:25785196-25785508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
2-447
               

               
Cow position:
               
chr28:26007325-26007771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
12-455
               

               
Cow position:
               
chr28:10464552-10464097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 12
               

               
Conread position:
               
20-294
               

               
Cow position:
               
chr28:13721258-13721531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
224, 159
               

               
Conread position:
               
21-182
               

               
Cow position:
               
chr28:28875382-28875225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
30-400
               

               
Cow position:
               
chr28:6658022-6657672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
356, 24
               

               
Conread position:
               
31-373
               

               
Cow position:
               
chr28:22827367-22827709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 48
               

               
Conread position:
               
43-341
               

               
Cow position:
               
chr28:18089682-18089390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
246, 122
               

               
Conread position:
               
50-454
               

               
Cow position:
               
chr28:34648277-34648682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 129
               

               
Conread position:
               
106-343
               

               
Cow position:
               
chr28:5812088-5812327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
5, 37
               

               
Conread position:
               
110-363
               

               
Cow position:
               
chr28:21325171-21325429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
175, 77
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr28:9137620-9137280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 155
               

               
Conread position:
               
111-375
               

               
Cow position:
               
chr28:2990582-2990311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
111-392
               

               
Cow position:
               
chr28:21358403-21358687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
145, 71
               

               
Conread position:
               
111-452
               

               
Cow position:
               
chr28:15681302-15681638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
223, 70
               

               
Conread position:
               
114-331
               

               
Cow position:
               
chr28:7790843-7790627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
156, 73
               

               
Conread position:
               
115-332
               

               
Cow position:
               
chr28:10619716-10619497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
180, 63
               

               
Conread position:
               
144-449
               

               
Cow position:
               
chr28:7900803-7901101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr29:804061-803761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
9-375
               

               
Cow position:
               
chr29:45464524-45464158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 142
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chr29:30810813-30811169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 142
               

               
Conread position:
               
11-388
               

               
Cow position:
               
chr29:32640060-32640429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 58
               

               
Conread position:
               
12-236
               

               
Cow position:
               
chr29:6470759-6470979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
16-349
               

               
Cow position:
               
chr29:1714381-1714708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 157
               

               
Conread position:
               
56-454
               

               
Cow position:
               
chr29:34752373-34751973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
57-363
               

               
Cow position:
               
chr29:103882-104181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 128
               

               
Conread position:
               
79-251
               

               
Cow position:
               
chr29:5184764-5184935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
83-453
               

               
Cow position:
               
chr29:11048618-11048994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 28
               

               
Conread position:
               
85-455
               

               
Cow position:
               
chr29:14073589-14073225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
172, 24
               

               
Conread position:
               
86-332
               

               
Cow position:
               
chr29:21432024-21431777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
206, 93
               

               
Conread position:
               
110-331
               

               
Cow position:
               
chr29:22318594-22318371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
174, 69
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr29:16769508-16769846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
241, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr29:27041394-27041046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
117-453
               

               
Cow position:
               
chr29:32890569-32890920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
133-455
               

               
Cow position:
               
chr29:14012865-14013186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
141-455
               

               
Cow position:
               
chr29:15950789-15950462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
149-378
               

               
Cow position:
               
chr29:10848704-10848467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
149-455
               

               
Cow position:
               
chr29:21543964-21543658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
166-451
               

               
Cow position:
               
chr29:8663683-8663987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
127, 21
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr7:49445595-49445904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chr7:63961405-63961118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr7:25249874-25250060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
8-422
               

               
Cow position:
               
chr7:54868129-54867731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
330, 15
               

               
Conread position:
               
9-169
               

               
Cow position:
               
chr7:1737254-1737088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
9-448
               

               
Cow position:
               
chr7:31864184-31864612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
279, 37
               

               
Conread position:
               
9-450
               

               
Cow position:
               
chr7:26883443-26883900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 187
               

               
Conread position:
               
9-452
               

               
Cow position:
               
chr7:47049735-47050183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 79
               

               
Conread position:
               
11-293
               

               
Cow position:
               
chr7:22680699-22680422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
12-373
               

               
Cow position:
               
chr7:60858041-60857688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 24
               

               
Conread position:
               
16-204
               

               
Cow position:
               
chr7:54886824-54887009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
17-335
               

               
Cow position:
               
chr7:23447805-23447514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
20-335
               

               
Cow position:
               
chr7:20429685-20429385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
23-363
               

               
Cow position:
               
chr7:37020980-37021308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
307, 70
               

               
Conread position:
               
38-355
               

               
Cow position:
               
chr7:39556891-39556577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
255, 94
               

               
Conread position:
               
38-447
               

               
Cow position:
               
chr7:58991432-58991849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 239
               

               
Conread position:
               
42-327
               

               
Cow position:
               
chr7:26457793-26457508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
43-287
               

               
Cow position:
               
chr7:68556261-68556500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
58-373
               

               
Cow position:
               
chr7:64394875-64395166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
277, 81
               

               
Conread position:
               
78-455
               

               
Cow position:
               
chr7:55281421-55281027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 178
               

               
Conread position:
               
83-450
               

               
Cow position:
               
chr7:67416447-67416800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
126, 28
               

               
Conread position:
               
86-452
               

               
Cow position:
               
chr7:52120696-52120320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
97-378
               

               
Cow position:
               
chr7:20107151-20106872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
124, 87
               

               
Conread position:
               
99-382
               

               
Cow position:
               
chr7:18936167-18935886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
99-455
               

               
Cow position:
               
chr7:38535945-38536282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
100-298
               

               
Cow position:
               
chr7:21251826-21251631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
100-396
               

               
Cow position:
               
chr7:67425771-67426070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
106-369
               

               
Cow position:
               
chr7:48632800-48633064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
5, 83
               

               
Conread position:
               
106-408
               

               
Cow position:
               
chr7:51013368-51013670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 77
               

               
Conread position:
               
109-452
               

               
Cow position:
               
chr7:41489545-41489894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
186, 72
               

               
Conread position:
               
110-310
               

               
Cow position:
               
chr7:35288220-35288021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
179, 69
               

               
Conread position:
               
110-380
               

               
Cow position:
               
chr7:993672-993938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
110-385
               

               
Cow position:
               
chr7:26890151-26890428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
159, 69
               

               
Conread position:
               
110-415
               

               
Cow position:
               
chr7:21242702-21242398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
190, 9
               

               
Conread position:
               
110-454
               

               
Cow position:
               
chr7:68779457-68779096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
119-396
               

               
Cow position:
               
chr7:30156890-30156612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
181, 69
               

               
Conread position:
               
119-455
               

               
Cow position:
               
chr7:53990169-53990522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
151, 63
               

               
Conread position:
               
122-387
               

               
Cow position:
               
chr7:3729483-3729744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
144, 136
               

               
Conread position:
               
126-450
               

               
Cow position:
               
chr7:53014911-53015253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
58, 170
               

               
Conread position:
               
142-453
               

               
Cow position:
               
chr7:41870459-41870168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
203, 39
               

               
Conread position:
               
220-455
               

               
Cow position:
               
chr7:1736665-1736415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
108, 79
               

               
Conread position:
               
3-454
               

               
Cow position:
               
chr8:12664545-12664072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr8:13735136-13735469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
4-452
               

               
Cow position:
               
chr8:25542097-25542545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
228, 10
               

               
Conread position:
               
8-335
               

               
Cow position:
               
chr8:53426817-53427141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
9-339
               

               
Cow position:
               
chr8:45161878-45161543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 172
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr8:45693896-45693562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 215
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr8:42466894-42467241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 96
               

               
Conread position:
               
39-406
               

               
Cow position:
               
chr8:23766826-23766471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
39-455
               

               
Cow position:
               
chr8:8904977-8904555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 19
               

               
Conread position:
               
45-455
               

               
Cow position:
               
chr8:42658928-42658510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
250, 41
               

               
Conread position:
               
76-373
               

               
Cow position:
               
chr8:11590200-11590488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 111
               

               
Conread position:
               
82-368
               

               
Cow position:
               
chr8:47884573-47884869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
135, 7
               

               
Conread position:
               
85-406
               

               
Cow position:
               
chr8:38607961-38607639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 100
               

               
Conread position:
               
90-411
               

               
Cow position:
               
chr8:48783604-48783921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
99-453
               

               
Cow position:
               
chr8:27924713-27925071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
100-454
               

               
Cow position:
               
chr8:44077442-44077071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
105-368
               

               
Cow position:
               
chr8:33429509-33429766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
180, 77
               

               
Conread position:
               
108-368
               

               
Cow position:
               
chr8:11970979-11970718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
111, 74
               

               
Conread position:
               
110-363
               

               
Cow position:
               
chr8:61036302-61036057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
226, 72
               

               
Conread position:
               
110-368
               

               
Cow position:
               
chr8:19229390-19229651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
185, 77
               

               
Conread position:
               
110-452
               

               
Cow position:
               
chr8:44037149-44036814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
241, 12
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr8:23216373-23216705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
229, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr8:45317510-45317172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
229, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr8:45448043-45448402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 172
               

               
Conread position:
               
114-397
               

               
Cow position:
               
chr8:42162059-42161776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
170, 65
               

               
Conread position:
               
126-455
               

               
Cow position:
               
chr8:32930134-32930455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
134-455
               

               
Cow position:
               
chr8:24421168-24420838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
211, 50
               

               
Conread position:
               
144-452
               

               
Cow position:
               
chr8:45188708-45189019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
144-453
               

               
Cow position:
               
chr8:8596270-8595947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
151-358
               

               
Cow position:
               
chr8:9264637-9264443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
196, 36
               

               
Conread position:
               
201-405
               

               
Cow position:
               
chr8:12544237-12544034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr9:6973220-6973449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 180
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr9:23400780-23401084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
9-277
               

               
Cow position:
               
chr9:52569579-52569847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 171
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr9:34107714-34107358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 39
               

               
Conread position:
               
9-384
               

               
Cow position:
               
chr9:13219508-13219879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
277, 27
               

               
Conread position:
               
9-449
               

               
Cow position:
               
chr9:20310566-20310119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 91
               

               
Conread position:
               
9-453
               

               
Cow position:
               
chr9:64118012-64118444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 101
               

               
Conread position:
               
9-455
               

               
Cow position:
               
chr9:6111779-6111348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 43
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr9:4027948-4027626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
11-455
               

               
Cow position:
               
chr9:6756712-6757172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
12-238
               

               
Cow position:
               
chr9:3579940-3579718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
19-177
               

               
Cow position:
               
chr9:39991813-39991970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
20-343
               

               
Cow position:
               
chr9:18835882-18836189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
31-256
               

               
Cow position:
               
chr9:240914-240690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
32-448
               

               
Cow position:
               
chr9:31776124-31776547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
133, 71
               

               
Conread position:
               
42-455
               

               
Cow position:
               
chr9:14962256-14961824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 132
               

               
Conread position:
               
43-451
               

               
Cow position:
               
chr9:26713115-26712719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
214, 44
               

               
Conread position:
               
44-300
               

               
Cow position:
               
chr9:26103410-26103155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
44-393
               

               
Cow position:
               
chr9:26237304-26237653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 70
               

               
Conread position:
               
71-277
               

               
Cow position:
               
chr9:17527544-17527337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
173, 38
               

               
Conread position:
               
79-406
               

               
Cow position:
               
chr9:4983991-4984314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 40
               

               
Conread position:
               
87-250
               

               
Cow position:
               
chr9:28002389-28002552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
118, 95
               

               
Conread position:
               
93-455
               

               
Cow position:
               
chr9:8969810-8969441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
110-426
               

               
Cow position:
               
chr9:3802757-3803067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
175, 69
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chr9:28626762-28626426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
241, 71
               

               
Conread position:
               
111-455
               

               
Cow position:
               
chr9:34990911-34991251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
221, 24
               

               
Conread position:
               
114-455
               

               
Cow position:
               
chr9:54359851-54360209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
181, 65
               

               
Conread position:
               
126-455
               

               
Cow position:
               
chr9:10321084-10321424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
137, 62
               

               
Conread position:
               
144-455
               

               
Cow position:
               
chr9:15071809-15072117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
176, 37
               

               
Conread position:
               
203-368
               

               
Cow position:
               
chr9:39992268-39992438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chrX:2142354-2142728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 127
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chrX:18532020-18532410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 167
               

               
Conread position:
               
9-375
               

               
Cow position:
               
chrX:22131653-22131284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 173
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chrX:17669357-17668993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 170
               

               
Conread position:
               
9-447
               

               
Cow position:
               
chrX:19185892-19185444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 184
               

               
Conread position:
               
9-453
               

               
Cow position:
               
chrX:13051734-13052177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 101
               

               
Conread position:
               
9-455
               

               
Cow position:
               
chrX:30369929-30369465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 104
               

               
Conread position:
               
9-455
               

               
Cow position:
               
chrX:34987710-34988153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 164
               

               
Conread position:
               
11-341
               

               
Cow position:
               
chrX:21271122-21270798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 68
               

               
Conread position:
               
12-348
               

               
Cow position:
               
chrX:24376417-24376744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
5, 99
               

               
Conread position:
               
38-293
               

               
Cow position:
               
chrX:22894295-22894041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
138, 152
               

               
Conread position:
               
39-455
               

               
Cow position:
               
chrX:12998491-12998077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 21
               

               
Conread position:
               
89-271
               

               
Cow position:
               
chrX:12974538-12974357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
89-453
               

               
Cow position:
               
chrX:25332220-25332585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
95-373
               

               
Cow position:
               
chrX:28549031-28549308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 89
               

               
Conread position:
               
97-409
               

               
Cow position:
               
chrX:28604936-28604635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
100-289
               

               
Cow position:
               
chrX:31372092-31372280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
101-335
               

               
Cow position:
               
chrX:17887733-17887965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
188, 27
               

               
Conread position:
               
105-382
               

               
Cow position:
               
chrX:21586159-21586438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
144, 151
               

               
Conread position:
               
110-338
               

               
Cow position:
               
chrX:30144351-30144123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
175, 72
               

               
Conread position:
               
110-452
               

               
Cow position:
               
chrX:21602047-21602393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
185, 62
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chrX:22777488-22777823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chrX:29283879-29284240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
185, 72
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chrX:30046959-30046607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
183, 71
               

               
Conread position:
               
110-455
               

               
Cow position:
               
chrX:30990794-30990446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
114-455
               

               
Cow position:
               
chrX:39716983-39717306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
237, 30
               

               
Conread position:
               
123-415
               

               
Cow position:
               
chrX:28553178-28553470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
173, 64
               

               
Conread position:
               
144-425
               

               
Cow position:
               
chrX:26504371-26504644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
190, 37
               

               
Conread position:
               
144-428
               

               
Cow position:
               
chrX:40057868-40057581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
151, 7
               

               
Conread position:
               
144-455
               

               
Cow position:
               
chrX:21290295-21289977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
146-453
               

               
Cow position:
               
chrX:13007436-13007126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
124, 42
               

               
Conread position:
               
156-368
               

               
Cow position:
               
chrX:35019849-35020064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
181-343
               

               
Cow position:
               
chrX:29883033-29882870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
264-455
               

               
Cow position:
               
chrX:18532318-18532513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 6