Cow genome map
| Conread name: | rnmm09c_h16.y1 |
| Conread position: | 1-165 |
| Cow position: | chr1:85593394-85593553 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 6-234 |
| Cow position: | chr10:66936367-66936588 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 49-330 |
| Cow position: | chr11:59919564-59919288 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 6-224 |
| Cow position: | chr12:5895717-5895504 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 1-229 |
| Cow position: | chr14:43373538-43373316 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 1-328 |
| Cow position: | chr14:27378058-27377737 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 47 |
| Conread position: | 1-137 |
| Cow position: | chr15:10258505-10258637 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-235 |
| Cow position: | chr15:13479815-13480053 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 2-328 |
| Cow position: | chr15:40605601-40605272 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 26-224 |
| Cow position: | chr15:47320412-47320219 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 129, 21 |
| Conread position: | 66-224 |
| Cow position: | chr15:35230759-35230607 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 108, 61 |
| Conread position: | 1-250 |
| Cow position: | chr16:18057247-18057488 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 245, 50 |
| Conread position: | 2-143 |
| Cow position: | chr16:21705131-21705269 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 2-224 |
| Cow position: | chr16:50953525-50953307 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 9-331 |
| Cow position: | chr16:27836017-27835717 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 207, 42 |
| Conread position: | 65-305 |
| Cow position: | chr16:13534123-13534353 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 126-331 |
| Cow position: | chr16:13167126-13166916 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 1-330 |
| Cow position: | chr17:4264873-4264549 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 181, 47 |
| Conread position: | 3-150 |
| Cow position: | chr17:11688373-11688231 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 88, 45 |
| Conread position: | 89-328 |
| Cow position: | chr17:27233734-27233974 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 90, 57 |
| Conread position: | 1-329 |
| Cow position: | chr18:27649155-27649483 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 2-330 |
| Cow position: | chr19:30270544-30270228 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 208, 49 |
| Conread position: | 10-329 |
| Cow position: | chr19:54906464-54906786 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 1-150 |
| Cow position: | chr2:20249853-20249998 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-330 |
| Cow position: | chr2:35012620-35012287 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 172, 47 |
| Conread position: | 71-330 |
| Cow position: | chr2:27803076-27803334 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 1-330 |
| Cow position: | chr20:19407288-19406958 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 260, 47 |
| Conread position: | 32-301 |
| Cow position: | chr21:2256537-2256806 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 2-150 |
| Cow position: | chr22:11777154-11777297 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-330 |
| Cow position: | chr24:5161867-5161546 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 156, 50 |
| Conread position: | 3-233 |
| Cow position: | chr24:15563829-15564052 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 171, 45 |
| Conread position: | 2-330 |
| Cow position: | chr25:12165843-12166168 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 156, 19 |
| Conread position: | 2-150 |
| Cow position: | chr26:23921394-23921249 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 2-150 |
| Cow position: | chr26:27220781-27220636 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 144, 49 |
| Conread position: | 26-323 |
| Cow position: | chr26:18714868-18715156 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 52-328 |
| Cow position: | chr27:29512250-29511980 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 1-217 |
| Cow position: | chr29:28691803-28691591 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 173, 53 |
| Conread position: | 1-260 |
| Cow position: | chr29:28268717-28268462 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 236, 47 |
| Conread position: | 10-223 |
| Cow position: | chr3:44368898-44368689 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 176, 38 |
| Conread position: | 34-224 |
| Cow position: | chr3:17583887-17584084 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 52-260 |
| Cow position: | chr3:58168659-58168866 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 106, 76 |
| Conread position: | 1-217 |
| Cow position: | chr4:21506076-21505867 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-143 |
| Cow position: | chr4:33539476-33539338 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 16-242 |
| Cow position: | chr4:28682325-28682103 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 210, 31 |
| Conread position: | 77-329 |
| Cow position: | chr4:50197583-50197823 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1-228 |
| Cow position: | chr5:60223270-60223487 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-259 |
| Cow position: | chr5:9922405-9922153 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 217, 44 |
| Conread position: | 2-150 |
| Cow position: | chr5:44504353-44504209 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 29-330 |
| Cow position: | chr5:3009958-3009664 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 177, 21 |
| Conread position: | 27-324 |
| Cow position: | chr6:57704743-57704461 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 146, 20 |
| Conread position: | 67-259 |
| Cow position: | chr6:3131431-3131235 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 2-142 |
| Cow position: | chr7:11371057-11370921 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-215 |
| Cow position: | chr7:30122406-30122198 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 69-327 |
| Cow position: | chr7:1705522-1705769 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 28-333 |
| Cow position: | chr8:52157570-52157271 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 147, 48 |
| Conread position: | 1-224 |
| Cow position: | chr9:49119879-49120098 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 144, 39 |
| Conread position: | 26-330 |
| Cow position: | chr9:6184096-6184394 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 224, 18 |
| Conread position: | 27-251 |
| Cow position: | chr9:50787618-50787392 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 118, 24 |
| Conread position: | 1-325 |
| Cow position: | chrX:34521069-34521382 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 239, 44 |
| Conread position: | 50-260 |
| Cow position: | chrX:22431780-22431988 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 120, 0 |