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Cow genome map

           
Conread name:
           
rnmm31c_l2.y1
        

               
Conread position:
               
40-435
               

               
Cow position:
               
chr1:22311144-22311539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
86, 74
               

               
Conread position:
               
47-462
               

               
Cow position:
               
chr1:22333834-22334249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
257, 264
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr1:22300307-22300689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
295, 315
               

               
Conread position:
               
52-461
               

               
Cow position:
               
chr1:22267333-22267742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
272, 254
               

               
Conread position:
               
52-468
               

               
Cow position:
               
chr1:22223369-22223786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
294, 310
               

               
Conread position:
               
63-435
               

               
Cow position:
               
chr1:51475875-51475503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
230, 248
               

               
Conread position:
               
63-468
               

               
Cow position:
               
chr1:22236243-22236653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
201, 195
               

               
Conread position:
               
63-588
               

               
Cow position:
               
chr1:51496964-51497489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
229, 248
               

               
Conread position:
               
107-434
               

               
Cow position:
               
chr1:22246168-22246489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
157, 90
               

               
Conread position:
               
13-144
               

               
Cow position:
               
chr10:69955172-69955304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
35-586
               

               
Cow position:
               
chr10:22285118-22284567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
175, 170
               

               
Conread position:
               
39-577
               

               
Cow position:
               
chr10:22122003-22122541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
39-577
               

               
Cow position:
               
chr10:22142469-22143007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr10:14296915-14296390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
289, 304
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr10:14310847-14310339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 221
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr10:22046858-22046333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
62-577
               

               
Cow position:
               
chr10:16591665-16592180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
64-475
               

               
Cow position:
               
chr10:16622903-16622493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
217, 213
               

               
Conread position:
               
64-585
               

               
Cow position:
               
chr10:16615297-16614779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
66-587
               

               
Cow position:
               
chr10:15742650-15742129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
132, 123
               

               
Conread position:
               
67-420
               

               
Cow position:
               
chr10:16638640-16638287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 74
               

               
Conread position:
               
67-462
               

               
Cow position:
               
chr10:16653263-16652868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
136-491
               

               
Cow position:
               
chr10:69955438-69955804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 83
               

               
Conread position:
               
478-591
               

               
Cow position:
               
chr10:69956025-69956138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-577
               

               
Cow position:
               
chr11:74294181-74294739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
34-577
               

               
Cow position:
               
chr11:74337390-74337937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
52-420
               

               
Cow position:
               
chr11:75235045-75235413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
52-447
               

               
Cow position:
               
chr11:74359690-74360088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
9, 262
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr11:74303169-74302644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr11:74315034-74315559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr11:74323012-74322487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
309, 319
               

               
Conread position:
               
52-591
               

               
Cow position:
               
chr11:75246917-75247456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
396, 408
               

               
Conread position:
               
67-590
               

               
Cow position:
               
chr11:75197536-75198059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
26, 30
               

               
Conread position:
               
67-590
               

               
Cow position:
               
chr11:75212619-75213142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
105, 100
               

               
Conread position:
               
68-420
               

               
Cow position:
               
chr11:75219500-75219852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
68-590
               

               
Cow position:
               
chr11:75271135-75271657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
73-591
               

               
Cow position:
               
chr11:75279707-75280225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
46-419
               

               
Cow position:
               
chr15:50134277-50134648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
245, 17
               

               
Conread position:
               
47-553
               

               
Cow position:
               
chr15:52721472-52721978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
302, 319
               

               
Conread position:
               
48-584
               

               
Cow position:
               
chr15:52730418-52730954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
49-499
               

               
Cow position:
               
chr15:50176195-50175747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
52-584
               

               
Cow position:
               
chr15:52755746-52756278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
52-584
               

               
Cow position:
               
chr15:52771789-52772321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
52-584
               

               
Cow position:
               
chr15:52811581-52812113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
8, 12
               

               
Conread position:
               
57-430
               

               
Cow position:
               
chr15:50131511-50131138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
235, 249
               

               
Conread position:
               
62-577
               

               
Cow position:
               
chr15:52710160-52710675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 303
               

               
Conread position:
               
64-577
               

               
Cow position:
               
chr15:50051195-50051708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
64-577
               

               
Cow position:
               
chr15:50066808-50067321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
40, 34
               

               
Conread position:
               
64-577
               

               
Cow position:
               
chr15:50074859-50075372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
64-583
               

               
Cow position:
               
chr15:50087875-50088394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
64-584
               

               
Cow position:
               
chr15:52784789-52785309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 46
               

               
Conread position:
               
64-584
               

               
Cow position:
               
chr15:52798068-52798588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
65-590
               

               
Cow position:
               
chr15:50160591-50160072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
163, 71
               

               
Conread position:
               
52-465
               

               
Cow position:
               
chr17:2482559-2482971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
144, 150
               

               
Conread position:
               
71-465
               

               
Cow position:
               
chr17:2463062-2463452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
319, 279
               

               
Conread position:
               
70-434
               

               
Cow position:
               
chr18:30657664-30658028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
47-591
               

               
Cow position:
               
chr19:18671450-18671995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 156
               

               
Conread position:
               
47-591
               

               
Cow position:
               
chr19:18685970-18686515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 156
               

               
Conread position:
               
50-420
               

               
Cow position:
               
chr19:18679143-18678774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
318, 0
               

               
Conread position:
               
51-420
               

               
Cow position:
               
chr19:18456402-18456033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
229, 219
               

               
Conread position:
               
51-420
               

               
Cow position:
               
chr19:18694213-18693844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
51-577
               

               
Cow position:
               
chr19:18446089-18445563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
242, 259
               

               
Conread position:
               
52-545
               

               
Cow position:
               
chr19:18716090-18715597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
52-586
               

               
Cow position:
               
chr19:3037527-3038061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
254, 260
               

               
Conread position:
               
70-430
               

               
Cow position:
               
chr19:20837772-20837412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
70-575
               

               
Cow position:
               
chr19:18481662-18481157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
73-577
               

               
Cow position:
               
chr19:18495522-18495018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
103-586
               

               
Cow position:
               
chr19:3017467-3017948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
202, 208
               

               
Conread position:
               
47-395
               

               
Cow position:
               
chr2:86441721-86442066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
160, 5
               

               
Conread position:
               
52-430
               

               
Cow position:
               
chr2:86480399-86480021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
228, 219
               

               
Conread position:
               
58-585
               

               
Cow position:
               
chr2:86493786-86493257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
71-465
               

               
Cow position:
               
chr2:592984-593377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
313, 287
               

               
Conread position:
               
28-588
               

               
Cow position:
               
chr23:24584400-24583841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 6
               

               
Conread position:
               
34-577
               

               
Cow position:
               
chr23:24609313-24609856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
47-588
               

               
Cow position:
               
chr23:25149664-25150204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 5
               

               
Conread position:
               
57-591
               

               
Cow position:
               
chr23:25122931-25123465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 41
               

               
Conread position:
               
65-577
               

               
Cow position:
               
chr23:25402811-25403323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
73-480
               

               
Cow position:
               
chr23:25365235-25365642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
73-480
               

               
Cow position:
               
chr23:25409978-25410385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
73-590
               

               
Cow position:
               
chr23:25539585-25539068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
114-455
               

               
Cow position:
               
chr23:25298625-25298964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
114-524
               

               
Cow position:
               
chr23:25316861-25317268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
116-436
               

               
Cow position:
               
chr23:24140193-24139873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
181, 195
               

               
Conread position:
               
46-466
               

               
Cow position:
               
chr24:1823341-1823758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
47-466
               

               
Cow position:
               
chr24:33193091-33193511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
71, 62
               

               
Conread position:
               
47-591
               

               
Cow position:
               
chr24:1832424-1832968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr24:1856526-1856907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
154, 82
               

               
Conread position:
               
52-587
               

               
Cow position:
               
chr24:1944671-1944136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
312, 319
               

               
Conread position:
               
72-461
               

               
Cow position:
               
chr24:1815219-1815608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
224, 235
               

               
Conread position:
               
79-461
               

               
Cow position:
               
chr24:1844486-1844868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
213, 228
               

               
Conread position:
               
24-548
               

               
Cow position:
               
chr25:401780-402303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
40-577
               

               
Cow position:
               
chr25:23352987-23353524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
207, 190
               

               
Conread position:
               
58-577
               

               
Cow position:
               
chr25:23329916-23329397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
222, 212
               

               
Conread position:
               
71-430
               

               
Cow position:
               
chr25:34487175-34486818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
208, 199
               

               
Conread position:
               
51-590
               

               
Cow position:
               
chr26:35085923-35086465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
42-462
               

               
Cow position:
               
chr29:21177239-21176820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 10
               

               
Conread position:
               
44-462
               

               
Cow position:
               
chr29:21208032-21207615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
47-462
               

               
Cow position:
               
chr29:21188461-21188047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
48-591
               

               
Cow position:
               
chr29:20069257-20068714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
200, 190
               

               
Conread position:
               
52-419
               

               
Cow position:
               
chr29:20229082-20229449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
201, 205
               

               
Conread position:
               
52-430
               

               
Cow position:
               
chr29:18704705-18704327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 36
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr29:19993206-19992824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr29:20003975-20003593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr29:20031497-20031115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
52-435
               

               
Cow position:
               
chr29:19979783-19979402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
52-449
               

               
Cow position:
               
chr29:20020406-20020009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
52-475
               

               
Cow position:
               
chr29:21249383-21248955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr29:18686732-18686210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
224, 203
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr29:18715339-18714817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
218, 213
               

               
Conread position:
               
56-475
               

               
Cow position:
               
chr29:21201956-21202377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
63-591
               

               
Cow position:
               
chr29:20217423-20216892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
143, 128
               

               
Conread position:
               
64-461
               

               
Cow position:
               
chr29:18741783-18741386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
134, 128
               

               
Conread position:
               
64-461
               

               
Cow position:
               
chr29:21229430-21229827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
64-464
               

               
Cow position:
               
chr29:20191962-20192359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
64-474
               

               
Cow position:
               
chr29:21441345-21440936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
132, 123
               

               
Conread position:
               
64-577
               

               
Cow position:
               
chr29:19938272-19938785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
389, 418
               

               
Conread position:
               
64-577
               

               
Cow position:
               
chr29:21464080-21464593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
240, 248
               

               
Conread position:
               
64-577
               

               
Cow position:
               
chr29:21487498-21488011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
241, 248
               

               
Conread position:
               
64-588
               

               
Cow position:
               
chr29:19961598-19962122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
134, 124
               

               
Conread position:
               
64-590
               

               
Cow position:
               
chr29:18776424-18776950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
241, 250
               

               
Conread position:
               
64-590
               

               
Cow position:
               
chr29:19913801-19914327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
64-591
               

               
Cow position:
               
chr29:18771001-18771525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
64-591
               

               
Cow position:
               
chr29:21482045-21482569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
65-591
               

               
Cow position:
               
chr29:21345457-21345980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
413, 236
               

               
Conread position:
               
66-590
               

               
Cow position:
               
chr29:21327836-21328360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
67-463
               

               
Cow position:
               
chr29:19901142-19901540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
136, 125
               

               
Conread position:
               
109-430
               

               
Cow position:
               
chr29:18726425-18726104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
196, 201
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr3:62252335-62252732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
75, 6
               

               
Conread position:
               
28-588
               

               
Cow position:
               
chr3:62265400-62265959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 6
               

               
Conread position:
               
32-570
               

               
Cow position:
               
chr3:62227445-62227983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
45-425
               

               
Cow position:
               
chr3:19767071-19766691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
162, 146
               

               
Conread position:
               
45-577
               

               
Cow position:
               
chr3:62238460-62237927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 115
               

               
Conread position:
               
73-430
               

               
Cow position:
               
chr3:62404430-62404073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
83-435
               

               
Cow position:
               
chr3:62302551-62302199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
217, 229
               

               
Conread position:
               
130-435
               

               
Cow position:
               
chr3:72143468-72143773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
163, 181
               

               
Conread position:
               
202-435
               

               
Cow position:
               
chr3:72170961-72171194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 109
               

               
Conread position:
               
38-429
               

               
Cow position:
               
chr4:58582650-58583041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
81, 76
               

               
Conread position:
               
47-577
               

               
Cow position:
               
chr4:58712608-58713137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
47-577
               

               
Cow position:
               
chr4:61596708-61597238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
245, 264
               

               
Conread position:
               
51-576
               

               
Cow position:
               
chr4:58742055-58742580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
51-577
               

               
Cow position:
               
chr4:58772578-58773104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
51-577
               

               
Cow position:
               
chr4:58784372-58784898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
52-293
               

               
Cow position:
               
chr4:58617639-58617880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 68
               

               
Conread position:
               
52-429
               

               
Cow position:
               
chr4:58517772-58518149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
52-429
               

               
Cow position:
               
chr4:58602288-58602665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr4:58725377-58725902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
64-435
               

               
Cow position:
               
chr4:60690669-60691040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
228, 247
               

               
Conread position:
               
128-575
               

               
Cow position:
               
chr4:58682230-58682677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 67
               

               
Conread position:
               
34-577
               

               
Cow position:
               
chr5:3298707-3299250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
40-437
               

               
Cow position:
               
chr5:26049976-26049579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
68, 55
               

               
Conread position:
               
52-447
               

               
Cow position:
               
chr5:26092182-26091787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
64-436
               

               
Cow position:
               
chr5:26165229-26164857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
64-436
               

               
Cow position:
               
chr5:26181705-26181333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
64-577
               

               
Cow position:
               
chr5:3261177-3261683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
134, 124
               

               
Conread position:
               
64-577
               

               
Cow position:
               
chr5:3293686-3294199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 123
               

               
Conread position:
               
65-569
               

               
Cow position:
               
chr5:3247394-3246890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
132, 104
               

               
Conread position:
               
65-577
               

               
Cow position:
               
chr5:35274055-35274567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
130, 121
               

               
Conread position:
               
67-434
               

               
Cow position:
               
chr5:25909577-25909212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
106, 101
               

               
Conread position:
               
69-437
               

               
Cow position:
               
chr5:26034870-26034502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
75-554
               

               
Cow position:
               
chr5:26144049-26143570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
280, 292
               

               
Conread position:
               
58-589
               

               
Cow position:
               
chr6:31076129-31075582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 38
               

               
Conread position:
               
8-577
               

               
Cow position:
               
chr7:54131282-54131852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
49, 307
               

               
Conread position:
               
18-577
               

               
Cow position:
               
chr7:32774180-32773622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
48-590
               

               
Cow position:
               
chr7:11617695-11617156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
70, 64
               

               
Conread position:
               
49-426
               

               
Cow position:
               
chr7:8766415-8766792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
50-589
               

               
Cow position:
               
chr7:32802176-32802717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
52-430
               

               
Cow position:
               
chr7:8793953-8794331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr7:8730893-8731275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr7:32718207-32718587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 48
               

               
Conread position:
               
52-486
               

               
Cow position:
               
chr7:8781670-8782100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr7:32688003-32688528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr7:32730513-32731038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
431, 414
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr7:32741590-32742115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
52-590
               

               
Cow position:
               
chr7:7080173-7080714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 427
               

               
Conread position:
               
52-590
               

               
Cow position:
               
chr7:58411839-58411301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 46
               

               
Conread position:
               
57-421
               

               
Cow position:
               
chr7:11659261-11659625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
291, 309
               

               
Conread position:
               
57-580
               

               
Cow position:
               
chr7:54143565-54144088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
153, 140
               

               
Conread position:
               
64-430
               

               
Cow position:
               
chr7:11610759-11610393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
132, 139
               

               
Conread position:
               
64-586
               

               
Cow position:
               
chr7:54056267-54056789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
67-577
               

               
Cow position:
               
chr7:27947317-27946807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
67-586
               

               
Cow position:
               
chr7:11628583-11628064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
136, 124
               

               
Conread position:
               
68-426
               

               
Cow position:
               
chr7:7197124-7196766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
68-590
               

               
Cow position:
               
chr7:32785753-32786277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
70-430
               

               
Cow position:
               
chr7:54081031-54080671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
70-434
               

               
Cow position:
               
chr7:32757037-32757401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
70-435
               

               
Cow position:
               
chr7:54046540-54046175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
119, 110
               

               
Conread position:
               
70-447
               

               
Cow position:
               
chr7:7225132-7224755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
70-577
               

               
Cow position:
               
chr7:32747749-32748256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
73-429
               

               
Cow position:
               
chr7:7215883-7215528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
73-435
               

               
Cow position:
               
chr7:7292348-7292710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
160-584
               

               
Cow position:
               
chr7:26833365-26832941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 99
               

               
Conread position:
               
160-584
               

               
Cow position:
               
chr7:26857412-26857836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 99
               

               
Conread position:
               
200-577
               

               
Cow position:
               
chr7:26873210-26872833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
331, 323
               

               
Conread position:
               
45-577
               

               
Cow position:
               
chr8:51834275-51834807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
50-587
               

               
Cow position:
               
chr8:51849007-51849544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
51-420
               

               
Cow position:
               
chr8:29348815-29349184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
250, 260
               

               
Conread position:
               
51-587
               

               
Cow position:
               
chr8:51873062-51873598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 60
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr8:28620724-28620199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr8:28633470-28632946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
52-577
               

               
Cow position:
               
chr8:29340621-29341145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
69-435
               

               
Cow position:
               
chr8:51525405-51525039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
70-465
               

               
Cow position:
               
chr8:51636566-51636961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
70-577
               

               
Cow position:
               
chr8:51584292-51583785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
70-284
               

               
Cow position:
               
chrX:16705555-16705341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
70-284
               

               
Cow position:
               
chrX:16705933-16705719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
70-574
               

               
Cow position:
               
chrX:16725978-16725475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
70-577
               

               
Cow position:
               
chrX:16705040-16704533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
310, 284
               

               
Conread position:
               
70-577
               

               
Cow position:
               
chrX:16740562-16740055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
412, 393
               

               
Conread position:
               
73-425
               

               
Cow position:
               
chrX:16713324-16712972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
307, 281