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Cow genome map

           
Conread name:
           
rpigcb_9829.y1
        

               
Conread position:
               
136-478
               

               
Cow position:
               
chr1:69415586-69415935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 107
               

               
Conread position:
               
217-509
               

               
Cow position:
               
chr1:51257074-51256788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
66, 54
               

               
Conread position:
               
221-489
               

               
Cow position:
               
chr1:52052664-52052932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
221-507
               

               
Cow position:
               
chr1:97622165-97622444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
221-509
               

               
Cow position:
               
chr1:25184166-25183877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
50, 101
               

               
Conread position:
               
230-527
               

               
Cow position:
               
chr1:11021061-11020770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
6, 103
               

               
Conread position:
               
231-522
               

               
Cow position:
               
chr1:81913111-81913412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
236-528
               

               
Cow position:
               
chr1:57247471-57247170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
237-516
               

               
Cow position:
               
chr1:55163954-55163668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
97, 82
               

               
Conread position:
               
335-526
               

               
Cow position:
               
chr1:99691082-99690891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
150, 177
               

               
Conread position:
               
356-511
               

               
Cow position:
               
chr1:46839502-46839344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 7
               

               
Conread position:
               
220-478
               

               
Cow position:
               
chr10:6038311-6038583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 92
               

               
Conread position:
               
221-376
               

               
Cow position:
               
chr10:21424653-21424802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
136, 78
               

               
Conread position:
               
221-525
               

               
Cow position:
               
chr10:65072090-65072404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
22, 169
               

               
Conread position:
               
224-536
               

               
Cow position:
               
chr10:3115504-3115183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
226-504
               

               
Cow position:
               
chr10:47493191-47493479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 155
               

               
Conread position:
               
237-506
               

               
Cow position:
               
chr10:15391497-15391240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
180, 79
               

               
Conread position:
               
237-528
               

               
Cow position:
               
chr10:39081404-39081097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 291
               

               
Conread position:
               
237-552
               

               
Cow position:
               
chr10:30450057-30450378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
64, 75
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr10:60358731-60358453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
87, 138
               

               
Conread position:
               
323-504
               

               
Cow position:
               
chr10:28734785-28734964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
344-511
               

               
Cow position:
               
chr10:19895285-19895119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
344-522
               

               
Cow position:
               
chr10:50390667-50390492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
219-511
               

               
Cow position:
               
chr11:67745355-67745052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
106, 209
               

               
Conread position:
               
221-548
               

               
Cow position:
               
chr11:8828600-8828940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 89
               

               
Conread position:
               
224-483
               

               
Cow position:
               
chr11:67236427-67236160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
80, 63
               

               
Conread position:
               
232-492
               

               
Cow position:
               
chr11:19269065-19269327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 123
               

               
Conread position:
               
270-444
               

               
Cow position:
               
chr11:53691221-53691048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
323-509
               

               
Cow position:
               
chr11:68750733-68750923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
323-511
               

               
Cow position:
               
chr11:21396278-21396094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
221-466
               

               
Cow position:
               
chr12:30064947-30064694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
221-483
               

               
Cow position:
               
chr12:28559306-28559028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
221-536
               

               
Cow position:
               
chr12:5797549-5797865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
115, 161
               

               
Conread position:
               
225-489
               

               
Cow position:
               
chr12:5146822-5146558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 80
               

               
Conread position:
               
250-511
               

               
Cow position:
               
chr12:15258739-15259003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
331-509
               

               
Cow position:
               
chr12:1883611-1883800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
344-511
               

               
Cow position:
               
chr12:42966872-42966706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
213-520
               

               
Cow position:
               
chr13:17886441-17886753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
221-511
               

               
Cow position:
               
chr13:54969864-54969581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
221-518
               

               
Cow position:
               
chr13:32717929-32717623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 124
               

               
Conread position:
               
221-532
               

               
Cow position:
               
chr13:18350771-18351102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
103, 89
               

               
Conread position:
               
225-500
               

               
Cow position:
               
chr13:14220433-14220701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
237-552
               

               
Cow position:
               
chr13:6621636-6621314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
68, 77
               

               
Conread position:
               
240-524
               

               
Cow position:
               
chr13:34995368-34995072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
344-520
               

               
Cow position:
               
chr13:10754990-10755166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 54
               

               
Conread position:
               
215-540
               

               
Cow position:
               
chr14:24837951-24837635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
224-511
               

               
Cow position:
               
chr14:39877596-39877312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 68
               

               
Conread position:
               
225-368
               

               
Cow position:
               
chr14:7582453-7582317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 85
               

               
Conread position:
               
225-514
               

               
Cow position:
               
chr14:47138791-47138496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
237-466
               

               
Cow position:
               
chr14:26960407-26960184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
237-552
               

               
Cow position:
               
chr14:12559469-12559144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
238-516
               

               
Cow position:
               
chr14:7648005-7647734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
247, 60
               

               
Conread position:
               
250-528
               

               
Cow position:
               
chr14:6789408-6789685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
112, 63
               

               
Conread position:
               
256-532
               

               
Cow position:
               
chr14:29577000-29576730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
228, 20
               

               
Conread position:
               
259-511
               

               
Cow position:
               
chr14:5835941-5836204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
323-518
               

               
Cow position:
               
chr14:5521711-5521527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
169-511
               

               
Cow position:
               
chr15:25111178-25110819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
221-506
               

               
Cow position:
               
chr15:40498254-40497973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
221-544
               

               
Cow position:
               
chr15:19725678-19725362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
224-511
               

               
Cow position:
               
chr15:27732454-27732744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
224-518
               

               
Cow position:
               
chr15:24977132-24976839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
109, 48
               

               
Conread position:
               
225-528
               

               
Cow position:
               
chr15:34255682-34255386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
68, 87
               

               
Conread position:
               
238-552
               

               
Cow position:
               
chr15:8230506-8230193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
106, 159
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr15:47105104-47105365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
119, 70
               

               
Conread position:
               
325-530
               

               
Cow position:
               
chr15:26734765-26734974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
40, 191
               

               
Conread position:
               
219-488
               

               
Cow position:
               
chr16:19003039-19003305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
130, 106
               

               
Conread position:
               
221-490
               

               
Cow position:
               
chr16:12738366-12738095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 90
               

               
Conread position:
               
221-512
               

               
Cow position:
               
chr16:28266977-28267268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
221-542
               

               
Cow position:
               
chr16:4979852-4979529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
26, 187
               

               
Conread position:
               
224-450
               

               
Cow position:
               
chr16:44722984-44723215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
224-511
               

               
Cow position:
               
chr16:42257495-42257198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
104, 196
               

               
Conread position:
               
224-530
               

               
Cow position:
               
chr16:44898705-44899006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
225-511
               

               
Cow position:
               
chr16:15320436-15320726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
78, 63
               

               
Conread position:
               
225-522
               

               
Cow position:
               
chr16:37924131-37924430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 142
               

               
Conread position:
               
232-526
               

               
Cow position:
               
chr16:46222931-46223234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 40
               

               
Conread position:
               
233-520
               

               
Cow position:
               
chr16:27005237-27004935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
237-501
               

               
Cow position:
               
chr16:52577488-52577212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
70, 57
               

               
Conread position:
               
237-511
               

               
Cow position:
               
chr16:27013926-27013643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 57
               

               
Conread position:
               
221-450
               

               
Cow position:
               
chr17:41811899-41811662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 51
               

               
Conread position:
               
221-493
               

               
Cow position:
               
chr17:4330697-4330434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
225-522
               

               
Cow position:
               
chr17:25145242-25145536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
144, 69
               

               
Conread position:
               
228-501
               

               
Cow position:
               
chr17:42435563-42435836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chr17:9911833-9911566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chr17:13989102-13989418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
238-516
               

               
Cow position:
               
chr17:23246277-23245991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 56
               

               
Conread position:
               
252-501
               

               
Cow position:
               
chr17:27429634-27429372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
290-526
               

               
Cow position:
               
chr17:22232255-22232496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
323-481
               

               
Cow position:
               
chr17:12538856-12539022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
221-550
               

               
Cow position:
               
chr18:25970618-25970959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
225-522
               

               
Cow position:
               
chr18:55697011-55697314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
231-504
               

               
Cow position:
               
chr18:21203267-21203541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
94, 56
               

               
Conread position:
               
236-524
               

               
Cow position:
               
chr18:33275294-33275006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 109
               

               
Conread position:
               
221-542
               

               
Cow position:
               
chr19:5648625-5648949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
26, 131
               

               
Conread position:
               
239-504
               

               
Cow position:
               
chr19:904997-904722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 75
               

               
Conread position:
               
249-500
               

               
Cow position:
               
chr19:10286902-10286650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
68, 126
               

               
Conread position:
               
321-537
               

               
Cow position:
               
chr19:5551962-5552180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
144-504
               

               
Cow position:
               
chr2:1918175-1918537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
107, 133
               

               
Conread position:
               
214-518
               

               
Cow position:
               
chr2:10655800-10656101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
218-543
               

               
Cow position:
               
chr2:53496859-53497168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 94
               

               
Conread position:
               
221-435
               

               
Cow position:
               
chr2:20868228-20868439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
141, 24
               

               
Conread position:
               
221-466
               

               
Cow position:
               
chr2:59380436-59380681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 72
               

               
Conread position:
               
221-493
               

               
Cow position:
               
chr2:57509452-57509175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 60
               

               
Conread position:
               
221-511
               

               
Cow position:
               
chr2:32453478-32453764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 115
               

               
Conread position:
               
224-517
               

               
Cow position:
               
chr2:85250383-85250094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
225-520
               

               
Cow position:
               
chr2:74209288-74209587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
227-545
               

               
Cow position:
               
chr2:469688-469368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
237-526
               

               
Cow position:
               
chr2:7966130-7965852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 54
               

               
Conread position:
               
237-552
               

               
Cow position:
               
chr2:14749624-14749299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
88, 246
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr2:6055997-6055711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
87, 138
               

               
Conread position:
               
239-520
               

               
Cow position:
               
chr2:4796783-4796501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 85
               

               
Conread position:
               
250-511
               

               
Cow position:
               
chr2:39663394-39663138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
165, 72
               

               
Conread position:
               
323-493
               

               
Cow position:
               
chr2:14155776-14155605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
108, 80
               

               
Conread position:
               
224-446
               

               
Cow position:
               
chr20:24234244-24234011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 90
               

               
Conread position:
               
224-510
               

               
Cow position:
               
chr20:32668060-32667777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
224-511
               

               
Cow position:
               
chr20:35843037-35843326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
224-551
               

               
Cow position:
               
chr20:20471874-20471534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
226-545
               

               
Cow position:
               
chr20:10759385-10759712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
238-518
               

               
Cow position:
               
chr20:9706848-9707117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
164, 66
               

               
Conread position:
               
206-546
               

               
Cow position:
               
chr21:4276476-4276821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 6
               

               
Conread position:
               
218-498
               

               
Cow position:
               
chr21:37845649-37845928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
149, 43
               

               
Conread position:
               
220-511
               

               
Cow position:
               
chr21:34565099-34565406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
224-511
               

               
Cow position:
               
chr21:8420736-8420461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
224-522
               

               
Cow position:
               
chr21:35062193-35061885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
101, 292
               

               
Conread position:
               
230-510
               

               
Cow position:
               
chr21:48290952-48291224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 62
               

               
Conread position:
               
224-500
               

               
Cow position:
               
chr22:26941833-26941549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
81, 90
               

               
Conread position:
               
224-510
               

               
Cow position:
               
chr22:44514713-44514997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
225-511
               

               
Cow position:
               
chr22:11257705-11257996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
75, 63
               

               
Conread position:
               
240-522
               

               
Cow position:
               
chr22:3842643-3842356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
241-524
               

               
Cow position:
               
chr22:2388976-2389250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
323-518
               

               
Cow position:
               
chr22:44608635-44608438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
323-552
               

               
Cow position:
               
chr22:9286471-9286694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
190, 31
               

               
Conread position:
               
141-422
               

               
Cow position:
               
chr23:24515759-24516034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
221-447
               

               
Cow position:
               
chr23:16793634-16793406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
115, 88
               

               
Conread position:
               
221-528
               

               
Cow position:
               
chr23:29272167-29271846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chr23:17000739-17000556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
237-440
               

               
Cow position:
               
chr23:40651441-40651646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr23:40525952-40526223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
323-534
               

               
Cow position:
               
chr23:6683674-6683456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
77-529
               

               
Cow position:
               
chr24:40207230-40206778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
221-546
               

               
Cow position:
               
chr24:6507745-6508078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 91
               

               
Conread position:
               
224-505
               

               
Cow position:
               
chr24:35529930-35529648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
224-528
               

               
Cow position:
               
chr24:36801399-36801106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
225-510
               

               
Cow position:
               
chr24:1271866-1272149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
133, 19
               

               
Conread position:
               
237-510
               

               
Cow position:
               
chr24:28279630-28279364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
237-511
               

               
Cow position:
               
chr24:25229058-25229338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 257
               

               
Conread position:
               
237-511
               

               
Cow position:
               
chr24:39955045-39955327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
221-510
               

               
Cow position:
               
chr25:20624888-20625187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
84, 91
               

               
Conread position:
               
221-511
               

               
Cow position:
               
chr25:34970508-34970220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 60
               

               
Conread position:
               
223-465
               

               
Cow position:
               
chr25:33245964-33245720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
82, 75
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr25:18131090-18130819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
266-496
               

               
Cow position:
               
chr25:36506294-36506513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
323-520
               

               
Cow position:
               
chr25:14118043-14117840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
221-500
               

               
Cow position:
               
chr26:17204078-17204367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
221-520
               

               
Cow position:
               
chr26:3756289-3755992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
105, 71
               

               
Conread position:
               
224-530
               

               
Cow position:
               
chr26:14080770-14080459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
221-525
               

               
Cow position:
               
chr27:26935989-26935692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
26, 87
               

               
Conread position:
               
224-449
               

               
Cow position:
               
chr27:16493494-16493725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
100, 75
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr27:29039013-29038727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
323-528
               

               
Cow position:
               
chr27:25292166-25292377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
49, 194
               

               
Conread position:
               
224-516
               

               
Cow position:
               
chr28:10641982-10642274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 8
               

               
Conread position:
               
224-525
               

               
Cow position:
               
chr28:34199056-34199362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
230-511
               

               
Cow position:
               
chr28:19133823-19133532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
231-521
               

               
Cow position:
               
chr28:18138973-18139238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
237-546
               

               
Cow position:
               
chr28:21873794-21873487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
238-530
               

               
Cow position:
               
chr28:4098863-4098575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
239-512
               

               
Cow position:
               
chr28:16687059-16686781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
240-510
               

               
Cow position:
               
chr28:15591007-15590739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 111
               

               
Conread position:
               
253-511
               

               
Cow position:
               
chr28:13936416-13936165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
109, 55
               

               
Conread position:
               
323-471
               

               
Cow position:
               
chr28:10674635-10674476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
323-511
               

               
Cow position:
               
chr28:23702940-23702753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
323-528
               

               
Cow position:
               
chr28:30961863-30961654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
215-551
               

               
Cow position:
               
chr29:18695303-18694960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
218-536
               

               
Cow position:
               
chr29:32655383-32655706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
87, 94
               

               
Conread position:
               
225-536
               

               
Cow position:
               
chr29:9938036-9938351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
26, 105
               

               
Conread position:
               
237-492
               

               
Cow position:
               
chr29:39023312-39023577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 173
               

               
Conread position:
               
237-496
               

               
Cow position:
               
chr29:478135-477860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
237-501
               

               
Cow position:
               
chr29:29302631-29302902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
237-518
               

               
Cow position:
               
chr29:18963762-18963474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
47, 76
               

               
Conread position:
               
238-522
               

               
Cow position:
               
chr29:17081-17373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
199-528
               

               
Cow position:
               
chr3:44254393-44254725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
221-476
               

               
Cow position:
               
chr3:9074320-9074567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
221-530
               

               
Cow position:
               
chr3:58865447-58865757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 71
               

               
Conread position:
               
224-501
               

               
Cow position:
               
chr3:1300238-1299963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 121
               

               
Conread position:
               
224-511
               

               
Cow position:
               
chr3:16077899-16077618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
224-517
               

               
Cow position:
               
chr3:29507604-29507311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 123
               

               
Conread position:
               
233-516
               

               
Cow position:
               
chr3:37186835-37186552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
236-552
               

               
Cow position:
               
chr3:48629583-48629908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
237-510
               

               
Cow position:
               
chr3:70754365-70754086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 130
               

               
Conread position:
               
237-539
               

               
Cow position:
               
chr3:63203440-63203138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 37
               

               
Conread position:
               
221-450
               

               
Cow position:
               
chr4:45952341-45952577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
221-511
               

               
Cow position:
               
chr4:5798008-5797703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 162
               

               
Conread position:
               
221-522
               

               
Cow position:
               
chr4:65406327-65406634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
104, 266
               

               
Conread position:
               
221-536
               

               
Cow position:
               
chr4:48499859-48499560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
142, 9
               

               
Conread position:
               
222-368
               

               
Cow position:
               
chr4:54146425-54146563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
71, 78
               

               
Conread position:
               
224-533
               

               
Cow position:
               
chr4:45234834-45235145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 118
               

               
Conread position:
               
323-511
               

               
Cow position:
               
chr4:20562543-20562352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
140-504
               

               
Cow position:
               
chr5:68081833-68082191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
215-503
               

               
Cow position:
               
chr5:48758018-48757721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
224-511
               

               
Cow position:
               
chr5:40234193-40233902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
83, 74
               

               
Conread position:
               
224-552
               

               
Cow position:
               
chr5:17869761-17869444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
70, 76
               

               
Conread position:
               
225-527
               

               
Cow position:
               
chr5:25919561-25919860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
237-518
               

               
Cow position:
               
chr5:17630824-17631112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
237-528
               

               
Cow position:
               
chr5:41598656-41598945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
221-368
               

               
Cow position:
               
chr6:9026609-9026465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
223-528
               

               
Cow position:
               
chr6:28477253-28476949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 119
               

               
Conread position:
               
224-522
               

               
Cow position:
               
chr6:51387835-51387538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr6:38899703-38899966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
237-509
               

               
Cow position:
               
chr6:38018331-38018059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
238-504
               

               
Cow position:
               
chr6:17248786-17248526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
253, 84
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr6:16626011-16625733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
249-511
               

               
Cow position:
               
chr6:23986688-23986951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
221-512
               

               
Cow position:
               
chr7:11872513-11872814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 93
               

               
Conread position:
               
224-506
               

               
Cow position:
               
chr7:47874898-47875179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 91
               

               
Conread position:
               
227-439
               

               
Cow position:
               
chr7:24667466-24667249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 73
               

               
Conread position:
               
237-448
               

               
Cow position:
               
chr7:12413238-12413449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 62
               

               
Conread position:
               
250-511
               

               
Cow position:
               
chr7:7096003-7096260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
260-499
               

               
Cow position:
               
chr7:29655856-29656097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
300-498
               

               
Cow position:
               
chr7:20043677-20043479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
360-527
               

               
Cow position:
               
chr7:27349291-27349454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
215-524
               

               
Cow position:
               
chr8:9236471-9236794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 101
               

               
Conread position:
               
218-490
               

               
Cow position:
               
chr8:25573102-25572827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 115
               

               
Conread position:
               
218-531
               

               
Cow position:
               
chr8:47678572-47678257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
107, 82
               

               
Conread position:
               
221-511
               

               
Cow position:
               
chr8:26229016-26228712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
224-530
               

               
Cow position:
               
chr8:18220679-18220992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
67, 91
               

               
Conread position:
               
237-448
               

               
Cow position:
               
chr8:6469126-6469329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
179, 40
               

               
Conread position:
               
237-521
               

               
Cow position:
               
chr8:55829306-55829593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
251-507
               

               
Cow position:
               
chr8:29262810-29262540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
323-504
               

               
Cow position:
               
chr8:24834677-24834488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
221-378
               

               
Cow position:
               
chr9:21462886-21462734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 93
               

               
Conread position:
               
221-497
               

               
Cow position:
               
chr9:20839608-20839886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 129
               

               
Conread position:
               
221-504
               

               
Cow position:
               
chr9:58204653-58204942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
224-445
               

               
Cow position:
               
chr9:34204112-34204331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
225-510
               

               
Cow position:
               
chr9:20039147-20038876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
51, 46
               

               
Conread position:
               
226-509
               

               
Cow position:
               
chr9:43911912-43912213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
236-491
               

               
Cow position:
               
chr9:38193008-38193266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 81
               

               
Conread position:
               
236-511
               

               
Cow position:
               
chr9:43037481-43037769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
237-490
               

               
Cow position:
               
chr9:2114007-2113740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 46
               

               
Conread position:
               
237-526
               

               
Cow position:
               
chr9:41958786-41958493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
212-552
               

               
Cow position:
               
chrX:22624558-22624209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
221-516
               

               
Cow position:
               
chrX:3160957-3161250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
221-544
               

               
Cow position:
               
chrX:27287660-27287981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
88, 71
               

               
Conread position:
               
224-519
               

               
Cow position:
               
chrX:36840936-36840636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 269
               

               
Conread position:
               
228-368
               

               
Cow position:
               
chrX:40643056-40642921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 84
               

               
Conread position:
               
237-502
               

               
Cow position:
               
chrX:30729355-30729626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
97, 86
               

               
Conread position:
               
237-511
               

               
Cow position:
               
chrX:27176256-27176550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
237-532
               

               
Cow position:
               
chrX:8558405-8558713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
237-535
               

               
Cow position:
               
chrX:23414312-23414621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 257
               

               
Conread position:
               
238-531
               

               
Cow position:
               
chrX:32623626-32623334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 85
               

               
Conread position:
               
238-540
               

               
Cow position:
               
chrX:40692696-40692996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
239-479
               

               
Cow position:
               
chrX:23785701-23785455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
240-507
               

               
Cow position:
               
chrX:11082569-11082839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 70
               

               
Conread position:
               
323-530
               

               
Cow position:
               
chrX:31745083-31745295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
324-546
               

               
Cow position:
               
chrX:4554363-4554134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 123
               

               
Conread position:
               
361-538
               

               
Cow position:
               
chrX:2029313-2029134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
55, 130