Cow genome map
| Conread name: | rpigcf0_003933.y1 |
| Conread position: | 6-539 |
| Cow position: | chr1:64326658-64327185 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 474, 16 |
| Conread position: | 345-537 |
| Cow position: | chr1:39249535-39249340 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 127, 17 |
| Conread position: | 335-538 |
| Cow position: | chr10:2188165-2187963 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 148, 7 |
| Conread position: | 353-537 |
| Cow position: | chr10:35443634-35443819 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 127, 7 |
| Conread position: | 365-537 |
| Cow position: | chr10:1339892-1340066 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 43 |
| Conread position: | 344-539 |
| Cow position: | chr11:9897728-9897923 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 139, 14 |
| Conread position: | 353-536 |
| Cow position: | chr11:79132255-79132440 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 130, 18 |
| Conread position: | 375-538 |
| Cow position: | chr11:15437412-15437579 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 345-538 |
| Cow position: | chr12:4378019-4377823 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 351-538 |
| Cow position: | chr12:14523048-14523239 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 360-539 |
| Cow position: | chr12:27512364-27512533 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 304-539 |
| Cow position: | chr13:48763997-48763755 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 345-537 |
| Cow position: | chr13:49062749-49062936 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 352-529 |
| Cow position: | chr13:62312640-62312824 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 354-539 |
| Cow position: | chr13:17378100-17378290 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 353-526 |
| Cow position: | chr14:20468612-20468788 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 127, 54 |
| Conread position: | 353-537 |
| Cow position: | chr14:40246524-40246336 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 344-539 |
| Cow position: | chr15:42102152-42102356 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 67 |
| Conread position: | 351-539 |
| Cow position: | chr15:5913283-5913092 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 11 |
| Conread position: | 355-539 |
| Cow position: | chr15:46054999-46055178 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 282-538 |
| Cow position: | chr16:47918584-47918842 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 79 |
| Conread position: | 352-528 |
| Cow position: | chr16:1652286-1652464 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 337-538 |
| Cow position: | chr17:28034629-28034832 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 154, 36 |
| Conread position: | 375-532 |
| Cow position: | chr17:26510344-26510183 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 156 |
| Conread position: | 337-538 |
| Cow position: | chr18:37874042-37873833 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 345-539 |
| Cow position: | chr18:7045758-7045948 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 130, 33 |
| Conread position: | 351-528 |
| Cow position: | chr18:10100852-10101031 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 9 |
| Conread position: | 352-538 |
| Cow position: | chr18:14287057-14286867 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 353-539 |
| Cow position: | chr18:14823545-14823733 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 351-538 |
| Cow position: | chr19:5175748-5175564 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 352-532 |
| Cow position: | chr19:12574041-12573857 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 352-538 |
| Cow position: | chr19:4839720-4839535 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 351-537 |
| Cow position: | chr2:9407753-9407943 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 132, 11 |
| Conread position: | 368-539 |
| Cow position: | chr20:34486387-34486563 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 39 |
| Conread position: | 334-537 |
| Cow position: | chr21:29912556-29912348 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 338-539 |
| Cow position: | chr22:17183256-17183461 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 375-537 |
| Cow position: | chr22:44611919-44612081 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 117, 24 |
| Conread position: | 352-537 |
| Cow position: | chr23:6698486-6698671 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 140, 21 |
| Conread position: | 353-539 |
| Cow position: | chr23:36431042-36430853 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 128, 8 |
| Conread position: | 382-539 |
| Cow position: | chr23:15866236-15866077 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 349-539 |
| Cow position: | chr24:19782517-19782708 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 351-538 |
| Cow position: | chr24:6415900-6416089 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 132, 11 |
| Conread position: | 352-539 |
| Cow position: | chr25:24077341-24077160 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 123, 8 |
| Conread position: | 376-486 |
| Cow position: | chr25:18824631-18824741 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 353-537 |
| Cow position: | chr28:23021391-23021202 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 311-537 |
| Cow position: | chr7:30715812-30715581 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 353-539 |
| Cow position: | chr8:42327486-42327676 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 354-539 |
| Cow position: | chr8:52619871-52619683 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 384-539 |
| Cow position: | chr9:29237404-29237245 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 23 |
| Conread position: | 349-537 |
| Cow position: | chrX:20766569-20766762 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 125, 44 |
| Conread position: | 349-538 |
| Cow position: | chrX:1342812-1342621 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 9 |